Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	set04_transDMproB_versus_DMpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	V$FREAC2_01
Enrichment Score (ES)	0.5091663
Normalized Enrichment Score (NES)	1.8640695
Nominal p-value	0.0
FDR q-value	0.040424097
FWER p-Value	0.073

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	0	63.431	0.0991	Yes
2	PRKCH	92	18.399	0.1229	Yes
3	CDKN1A	113	17.385	0.1489	Yes
4	MARCKS	184	14.244	0.1674	Yes
5	NDRG1	274	12.584	0.1822	Yes
6	SMAD1	309	12.223	0.1994	Yes
7	SQSTM1	358	11.554	0.2149	Yes
8	BCL11A	362	11.533	0.2327	Yes
9	SEPP1	380	11.188	0.2493	Yes
10	HBP1	422	10.739	0.2638	Yes
11	ERG	426	10.702	0.2804	Yes
12	KLF3	428	10.680	0.2970	Yes
13	TIAM1	431	10.657	0.3135	Yes
14	MBNL2	470	10.212	0.3274	Yes
15	NFIX	523	9.724	0.3398	Yes
16	PPAP2B	545	9.450	0.3534	Yes
17	MMP13	619	8.851	0.3633	Yes
18	ABTB1	622	8.824	0.3769	Yes
19	THRA	657	8.562	0.3884	Yes
20	RAB6IP1	677	8.457	0.4006	Yes
21	SMAD5	733	8.146	0.4104	Yes
22	HOXB4	768	7.921	0.4209	Yes
23	LRP5	863	7.384	0.4273	Yes
24	ETV5	941	7.015	0.4341	Yes
25	MBNL1	963	6.901	0.4437	Yes
26	UHRF2	982	6.819	0.4534	Yes
27	AXL	1143	6.168	0.4544	Yes
28	CHD2	1148	6.153	0.4638	Yes
29	SH3GL3	1207	5.894	0.4698	Yes
30	IGF1	1238	5.779	0.4772	Yes
31	DUSP1	1361	5.322	0.4789	Yes
32	TBCC	1372	5.304	0.4866	Yes
33	ELMO1	1445	5.102	0.4907	Yes
34	PAK1	1819	4.193	0.4770	Yes
35	PITPNC1	1880	4.070	0.4801	Yes
36	EGLN1	1990	3.839	0.4802	Yes
37	NAP1L3	2005	3.809	0.4854	Yes
38	TCF15	2065	3.695	0.4880	Yes
39	PELI2	2139	3.557	0.4896	Yes
40	BRIP1	2165	3.530	0.4937	Yes
41	FBXW7	2351	3.213	0.4887	Yes
42	EYA1	2422	3.111	0.4898	Yes
43	HIBADH	2455	3.072	0.4928	Yes
44	ARID4A	2478	3.041	0.4964	Yes
45	UTX	2480	3.038	0.5011	Yes
46	PPM1D	2574	2.889	0.5005	Yes
47	CALD1	2646	2.800	0.5011	Yes
48	PLAG1	2740	2.688	0.5002	Yes
49	DUSP4	2783	2.646	0.5021	Yes
50	DHRS3	2850	2.563	0.5025	Yes
51	KBTBD2	2858	2.547	0.5061	Yes
52	RPS18	2931	2.469	0.5060	Yes
53	IL6ST	2945	2.449	0.5092	Yes
54	HIPK1	3149	2.247	0.5017	No
55	STOML3	3210	2.180	0.5018	No
56	ZADH2	3227	2.164	0.5043	No
57	PLCB2	3305	2.098	0.5034	No
58	VPS52	3370	2.040	0.5031	No
59	PCF11	3408	2.006	0.5043	No
60	CDKN1C	3423	1.989	0.5066	No
61	BCL9	3470	1.955	0.5072	No
62	HEBP2	3501	1.934	0.5086	No
63	PITX2	3728	1.764	0.4991	No
64	MAP4K5	3731	1.762	0.5017	No
65	IRS4	3765	1.736	0.5026	No
66	TCF1	3777	1.726	0.5047	No
67	UBE2H	3862	1.664	0.5028	No
68	PHF15	4070	1.543	0.4939	No
69	RBM16	4149	1.503	0.4921	No
70	CPNE1	4234	1.445	0.4898	No
71	PIK3C2A	4295	1.411	0.4887	No
72	DNAJB12	4399	1.349	0.4852	No
73	NGEF	4464	1.306	0.4838	No
74	RORA	4557	1.246	0.4808	No
75	MITF	4754	1.153	0.4719	No
76	NRAP	4775	1.143	0.4726	No
77	BCAS3	4900	1.085	0.4676	No
78	RASD1	4974	1.048	0.4653	No
79	TRPC4	4988	1.043	0.4662	No
80	NFRKB	5035	1.019	0.4653	No
81	VIT	5114	0.986	0.4626	No
82	EZH1	5185	0.954	0.4603	No
83	GNPNAT1	5273	0.910	0.4570	No
84	HAND2	5497	0.819	0.4462	No
85	FGF12	5688	0.738	0.4370	No
86	ACCN1	5961	0.642	0.4233	No
87	AP1G2	5994	0.628	0.4225	No
88	EXT1	5998	0.627	0.4233	No
89	HOXA11	6086	0.585	0.4195	No
90	KCTD15	6197	0.545	0.4144	No
91	STK3	6237	0.529	0.4131	No
92	PCDH18	6259	0.521	0.4128	No
93	BRUNOL6	6468	0.445	0.4022	No
94	SLC2A4	6969	0.278	0.3755	No
95	ATBF1	7019	0.260	0.3733	No
96	MRGPRF	7217	0.195	0.3629	No
97	BMP2	7510	0.111	0.3472	No
98	MLLT6	7613	0.078	0.3418	No
99	DHX8	7653	0.063	0.3398	No
100	SYT1	7677	0.056	0.3387	No
101	HHIP	7886	-0.005	0.3274	No
102	ENPP2	7917	-0.013	0.3258	No
103	GPR4	8094	-0.073	0.3163	No
104	SCRN3	8158	-0.090	0.3131	No
105	PLUNC	8326	-0.141	0.3042	No
106	ROR1	8577	-0.214	0.2910	No
107	CLDN8	8625	-0.232	0.2888	No
108	PURA	8934	-0.326	0.2726	No
109	SIN3A	9176	-0.392	0.2602	No
110	CD2AP	9269	-0.421	0.2558	No
111	DSTN	9436	-0.468	0.2476	No
112	HOXD9	9456	-0.474	0.2473	No
113	TGFB3	9645	-0.526	0.2379	No
114	RARA	9678	-0.536	0.2370	No
115	CITED2	9749	-0.557	0.2341	No
116	PAPPA	9881	-0.596	0.2279	No
117	GREM1	9928	-0.609	0.2264	No
118	RAD21	9989	-0.624	0.2241	No
119	SLC34A3	10051	-0.644	0.2218	No
120	CGA	10285	-0.703	0.2102	No
121	SLITRK5	10589	-0.791	0.1950	No
122	SYT6	10917	-0.882	0.1787	No
123	FOXP2	10976	-0.896	0.1769	No
124	EN1	11004	-0.905	0.1769	No
125	SLC38A3	11072	-0.922	0.1747	No
126	WEE1	11125	-0.938	0.1733	No
127	EVI1	11169	-0.951	0.1725	No
128	RASGEF1B	11178	-0.952	0.1735	No
129	FGF9	11632	-1.082	0.1507	No
130	HABP4	11673	-1.098	0.1502	No
131	MID1	11932	-1.176	0.1380	No
132	PCSK1	12166	-1.250	0.1274	No
133	MCC	12218	-1.264	0.1266	No
134	BMP5	12366	-1.309	0.1206	No
135	EPHB3	12426	-1.327	0.1195	No
136	KLF12	12519	-1.353	0.1166	No
137	BCL11B	12551	-1.361	0.1171	No
138	CD109	12587	-1.370	0.1173	No
139	POU3F3	12677	-1.403	0.1147	No
140	NRG1	12758	-1.429	0.1126	No
141	NFIB	12804	-1.445	0.1124	No
142	BDNF	12898	-1.477	0.1097	No
143	FGF20	12944	-1.491	0.1095	No
144	EN2	13623	-1.738	0.0755	No
145	ADAM12	13700	-1.770	0.0741	No
146	AP4M1	13761	-1.795	0.0737	No
147	HOXC12	13890	-1.848	0.0696	No
148	FOXB1	13933	-1.869	0.0703	No
149	CHCHD7	13938	-1.871	0.0730	No
150	OFCC1	14269	-2.020	0.0582	No
151	CXXC5	14409	-2.096	0.0540	No
152	HR	14469	-2.130	0.0541	No
153	RBM4	14603	-2.193	0.0503	No
154	MAFF	14629	-2.209	0.0524	No
155	E2F3	14675	-2.239	0.0534	No
156	TBX4	14874	-2.350	0.0464	No
157	DSG4	15422	-2.735	0.0210	No
158	CLPX	15589	-2.866	0.0165	No
159	TPP2	15625	-2.897	0.0191	No
160	DTNA	15663	-2.927	0.0216	No
161	PRDM1	15689	-2.948	0.0249	No
162	TOB1	15802	-3.090	0.0236	No
163	GPRC5C	15830	-3.125	0.0271	No
164	PROX1	15833	-3.126	0.0318	No
165	CDX2	15835	-3.128	0.0367	No
166	NNT	15954	-3.247	0.0353	No
167	FOSL2	16044	-3.351	0.0357	No
168	AKT2	16062	-3.372	0.0401	No
169	HOXC8	16107	-3.422	0.0430	No
170	STOML2	16245	-3.603	0.0412	No
171	POU3F4	16353	-3.758	0.0413	No
172	MCM7	16403	-3.842	0.0446	No
173	MRVI1	16434	-3.889	0.0491	No
174	PDE7A	16842	-4.656	0.0343	No
175	MPP6	17249	-5.598	0.0210	No
176	HOXC4	17327	-5.782	0.0259	No
177	LMO4	17529	-6.463	0.0251	No
178	DOCK3	17998	-8.531	0.0130	No
179	CPN1	18457	-13.108	0.0086	No