Details for gene set NUCLEAR

Table: GSEA Results Summary

Dataset	set04_transDMpreB_versus_WTpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	NUCLEAR_PART
Enrichment Score (ES)	0.56971234
Normalized Enrichment Score (NES)	2.233032
Nominal p-value	0.0
FDR q-value	0.0
FWER p-Value	0.0

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDKN2A	0	53.800	0.0308	Yes
2	PCGF6	20	21.394	0.0420	Yes
3	IKBKAP	30	18.923	0.0523	Yes
4	NOL1	31	18.917	0.0632	Yes
5	CIRH1A	45	17.130	0.0723	Yes
6	GNL3	53	16.799	0.0815	Yes
7	RANBP5	58	16.324	0.0906	Yes
8	EXOSC1	90	14.634	0.0973	Yes
9	NOL6	97	14.194	0.1051	Yes
10	MYBBP1A	98	14.156	0.1132	Yes
11	NOLA2	103	13.964	0.1209	Yes
12	RPP38	105	13.842	0.1288	Yes
13	HSPD1	127	13.272	0.1353	Yes
14	RRP9	128	13.247	0.1428	Yes
15	SDAD1	131	13.197	0.1503	Yes
16	SNRPF	151	12.568	0.1564	Yes
17	U2AF1	184	11.817	0.1614	Yes
18	NUP133	200	11.445	0.1672	Yes
19	LYAR	201	11.440	0.1737	Yes
20	SNRPD1	235	10.899	0.1781	Yes
21	SNRPD3	236	10.897	0.1844	Yes
22	DDX21	240	10.796	0.1904	Yes
23	CPSF1	260	10.576	0.1954	Yes
24	RCC1	276	10.408	0.2005	Yes
25	MKI67IP	293	10.191	0.2055	Yes
26	EFTUD2	306	10.035	0.2106	Yes
27	NOLA3	310	9.971	0.2161	Yes
28	GTF2H4	314	9.906	0.2216	Yes
29	POLR3H	329	9.824	0.2265	Yes
30	WDHD1	332	9.784	0.2320	Yes
31	CHAF1B	339	9.719	0.2372	Yes
32	RAE1	342	9.648	0.2426	Yes
33	PHF5A	351	9.518	0.2476	Yes
34	GEMIN5	352	9.516	0.2531	Yes
35	ELP3	360	9.459	0.2581	Yes
36	PPARGC1B	362	9.444	0.2634	Yes
37	MPG	363	9.439	0.2688	Yes
38	NUP107	365	9.417	0.2742	Yes
39	NOLC1	378	9.329	0.2789	Yes
40	NCL	390	9.246	0.2835	Yes
41	XRN2	395	9.212	0.2886	Yes
42	TXNL4A	401	9.146	0.2936	Yes
43	RUVBL1	414	9.053	0.2981	Yes
44	SNRPA1	424	8.961	0.3027	Yes
45	MRPL19	430	8.911	0.3075	Yes
46	RUVBL2	469	8.535	0.3103	Yes
47	EIF5A	471	8.526	0.3152	Yes
48	CDK8	483	8.450	0.3194	Yes
49	TUBG1	495	8.384	0.3236	Yes
50	ERCC8	506	8.311	0.3278	Yes
51	POLR1E	522	8.137	0.3316	Yes
52	KPNB1	528	8.101	0.3360	Yes
53	MORF4L2	564	7.838	0.3386	Yes
54	POLR2J	575	7.790	0.3425	Yes
55	CHAF1A	578	7.784	0.3468	Yes
56	GEMIN6	598	7.605	0.3501	Yes
57	RPA1	599	7.604	0.3545	Yes
58	NSUN2	603	7.571	0.3586	Yes
59	ASH2L	651	7.277	0.3602	Yes
60	GTF2H1	671	7.198	0.3633	Yes
61	SF3A3	689	7.079	0.3664	Yes
62	MCM7	698	7.027	0.3700	Yes
63	GEMIN4	708	6.976	0.3735	Yes
64	HDAC6	720	6.919	0.3769	Yes
65	SF3B3	721	6.919	0.3808	Yes
66	LSM4	730	6.868	0.3843	Yes
67	MCM3	731	6.865	0.3882	Yes
68	NBN	733	6.858	0.3921	Yes
69	PARP1	742	6.797	0.3956	Yes
70	ASCC3L1	767	6.723	0.3981	Yes
71	RAD51	776	6.691	0.4015	Yes
72	COIL	780	6.678	0.4051	Yes
73	ERCC1	799	6.622	0.4079	Yes
74	NOL5A	817	6.547	0.4107	Yes
75	NARG1	821	6.535	0.4143	Yes
76	RPA2	849	6.392	0.4165	Yes
77	TIMM50	861	6.352	0.4195	Yes
78	COPS2	894	6.188	0.4213	Yes
79	POLI	937	6.030	0.4225	Yes
80	HNRPDL	941	6.014	0.4257	Yes
81	LRPPRC	964	5.939	0.4279	Yes
82	SNRPG	986	5.868	0.4301	Yes
83	HDAC10	998	5.821	0.4329	Yes
84	GTF3C3	1005	5.800	0.4358	Yes
85	MRE11A	1007	5.796	0.4391	Yes
86	SMC3	1015	5.758	0.4420	Yes
87	TRIM27	1016	5.745	0.4453	Yes
88	PRPF8	1032	5.686	0.4477	Yes
89	PTGES3	1040	5.650	0.4506	Yes
90	TIPIN	1046	5.625	0.4535	Yes
91	GTF2F1	1058	5.591	0.4561	Yes
92	SNRPD2	1061	5.582	0.4592	Yes
93	NUP54	1098	5.452	0.4604	Yes
94	NAP1L1	1102	5.432	0.4633	Yes
95	BARD1	1120	5.391	0.4654	Yes
96	PTBP1	1135	5.338	0.4677	Yes
97	NUTF2	1142	5.309	0.4704	Yes
98	POLR2E	1154	5.265	0.4729	Yes
99	SF3A1	1167	5.221	0.4752	Yes
100	WDR4	1182	5.172	0.4774	Yes
101	MSH2	1227	5.033	0.4778	Yes
102	IVNS1ABP	1236	5.009	0.4803	Yes
103	BUB1B	1274	4.906	0.4810	Yes
104	CLOCK	1275	4.902	0.4838	Yes
105	SURF6	1277	4.897	0.4866	Yes
106	RANBP2	1289	4.869	0.4888	Yes
107	AAAS	1308	4.821	0.4905	Yes
108	HTATIP2	1313	4.811	0.4931	Yes
109	KRR1	1328	4.756	0.4950	Yes
110	RPP30	1367	4.626	0.4956	Yes
111	NUP62	1384	4.574	0.4973	Yes
112	SMARCC1	1403	4.506	0.4989	Yes
113	SNAPC4	1408	4.499	0.5013	Yes
114	SRP68	1430	4.450	0.5027	Yes
115	SUV39H1	1448	4.389	0.5042	Yes
116	RAD50	1454	4.376	0.5065	Yes
117	SNRP70	1455	4.376	0.5090	Yes
118	SNRPA	1459	4.368	0.5113	Yes
119	POP1	1474	4.345	0.5130	Yes
120	ZRSR2	1477	4.339	0.5154	Yes
121	ILF2	1483	4.306	0.5176	Yes
122	SIP1	1529	4.216	0.5175	Yes
123	HDAC1	1535	4.202	0.5197	Yes
124	MPHOSPH1	1536	4.202	0.5221	Yes
125	XPO7	1551	4.153	0.5237	Yes
126	NAP1L4	1557	4.142	0.5258	Yes
127	HNRPH1	1586	4.088	0.5266	Yes
128	TCOF1	1588	4.083	0.5289	Yes
129	BCL2	1621	4.010	0.5294	Yes
130	CHEK2	1647	3.955	0.5303	Yes
131	SLC29A2	1656	3.941	0.5321	Yes
132	HDAC2	1672	3.914	0.5335	Yes
133	SMC1A	1682	3.894	0.5352	Yes
134	SF3B2	1697	3.869	0.5367	Yes
135	SNRPB	1703	3.855	0.5386	Yes
136	SMARCE1	1728	3.808	0.5395	Yes
137	API5	1729	3.806	0.5417	Yes
138	NUP50	1748	3.769	0.5428	Yes
139	GTF3C1	1751	3.763	0.5449	Yes
140	HNRPM	1780	3.705	0.5455	Yes
141	PRPF31	1783	3.699	0.5475	Yes
142	POLQ	1796	3.669	0.5489	Yes
143	POLR2A	1817	3.619	0.5499	Yes
144	HMGA1	1826	3.607	0.5515	Yes
145	SFRS2	1866	3.517	0.5514	Yes
146	FOXF2	1867	3.516	0.5534	Yes
147	CHEK1	1871	3.510	0.5552	Yes
148	BRCC3	1876	3.504	0.5570	Yes
149	PPIH	1905	3.449	0.5575	Yes
150	RPA3	1932	3.406	0.5580	Yes
151	RPS19	1945	3.390	0.5593	Yes
152	NUP160	1950	3.381	0.5610	Yes
153	PRICKLE1	1968	3.356	0.5620	Yes
154	UBTF	1999	3.301	0.5622	Yes
155	DDX11	2055	3.212	0.5610	Yes
156	TPR	2057	3.210	0.5628	Yes
157	EED	2064	3.200	0.5643	Yes
158	TIMELESS	2068	3.193	0.5660	Yes
159	ZNF638	2111	3.127	0.5654	Yes
160	SMARCD3	2149	3.075	0.5652	Yes
161	TAF6	2153	3.072	0.5668	Yes
162	MSH6	2162	3.058	0.5681	Yes
163	FUSIP1	2172	3.035	0.5693	Yes
164	TBP	2197	3.003	0.5697	Yes
165	MSH3	2257	2.909	0.5681	No
166	TOP2A	2322	2.831	0.5662	No
167	EXOSC10	2383	2.742	0.5645	No
168	POLR3C	2391	2.732	0.5657	No
169	MATR3	2407	2.715	0.5664	No
170	BCAS2	2413	2.704	0.5677	No
171	KPNA2	2441	2.674	0.5677	No
172	SMC2	2459	2.660	0.5683	No
173	BRCA1	2502	2.617	0.5675	No
174	BRE	2672	2.461	0.5596	No
175	NR6A1	2881	2.279	0.5495	No
176	MED4	2885	2.275	0.5506	No
177	SUMO1	2970	2.200	0.5473	No
178	GTF3C4	2979	2.196	0.5481	No
179	DHX15	2987	2.190	0.5490	No
180	BNIP3	3011	2.164	0.5489	No
181	SNUPN	3035	2.145	0.5489	No
182	ARID1A	3070	2.125	0.5483	No
183	FMR1	3089	2.112	0.5485	No
184	CENPF	3104	2.102	0.5489	No
185	CPSF3	3114	2.093	0.5496	No
186	ACTL6A	3124	2.086	0.5503	No
187	GTF3C5	3139	2.074	0.5507	No
188	TAF5	3186	2.040	0.5494	No
189	HDAC3	3242	1.996	0.5475	No
190	NUP88	3248	1.992	0.5484	No
191	EMG1	3269	1.974	0.5484	No
192	GLIS2	3282	1.966	0.5489	No
193	PHF12	3318	1.933	0.5480	No
194	NPM1	3360	1.903	0.5469	No
195	MED6	3366	1.899	0.5477	No
196	TAF4	3376	1.891	0.5483	No
197	LRCH4	3549	1.788	0.5398	No
198	CCNH	3774	1.669	0.5285	No
199	NF2	3819	1.643	0.5270	No
200	IFI16	3912	1.596	0.5229	No
201	EDF1	3913	1.596	0.5238	No
202	RPL3	3963	1.574	0.5220	No
203	SNRPN	3979	1.567	0.5221	No
204	RSF1	4043	1.537	0.5195	No
205	DHX8	4113	1.513	0.5165	No
206	ANAPC5	4129	1.507	0.5166	No
207	U2AF2	4166	1.488	0.5155	No
208	ARID4A	4176	1.483	0.5158	No
209	ATRX	4191	1.476	0.5159	No
210	HNRPK	4194	1.474	0.5166	No
211	DDX47	4212	1.467	0.5165	No
212	NUDT21	4245	1.454	0.5156	No
213	RANGAP1	4252	1.449	0.5161	No
214	BNIP1	4288	1.434	0.5150	No
215	HIF1A	4444	1.376	0.5073	No
216	TDG	4455	1.373	0.5075	No
217	ASNA1	4514	1.346	0.5051	No
218	KPNA3	4550	1.334	0.5039	No
219	PRM2	4581	1.322	0.5030	No
220	PTGER3	4667	1.285	0.4991	No
221	TAF9	4814	1.226	0.4918	No
222	DNMT3A	5090	1.145	0.4773	No
223	RPP40	5105	1.139	0.4772	No
224	GCM1	5197	1.108	0.4728	No
225	SAP18	5230	1.100	0.4717	No
226	HNRPH2	5232	1.100	0.4723	No
227	ANAPC4	5359	1.064	0.4660	No
228	PAX8	5386	1.051	0.4651	No
229	NCR1	5395	1.044	0.4653	No
230	OIP5	5415	1.038	0.4648	No
231	DDX56	5449	1.028	0.4636	No
232	PAM	5575	0.991	0.4573	No
233	FIGLA	5632	0.976	0.4548	No
234	SMARCA5	5702	0.953	0.4515	No
235	GUCY2F	5796	0.927	0.4470	No
236	NKX2-5	5827	0.918	0.4458	No
237	NPAS2	5966	0.878	0.4388	No
238	IPO7	6015	0.863	0.4366	No
239	KLHDC3	6020	0.862	0.4369	No
240	PITX2	6070	0.848	0.4347	No
241	SCRN1	6091	0.841	0.4341	No
242	FOXC1	6120	0.834	0.4330	No
243	LMNB1	6146	0.827	0.4321	No
244	SF3A2	6186	0.816	0.4304	No
245	INTS6	6219	0.809	0.4291	No
246	ACTB	6384	0.769	0.4205	No
247	GRINL1A	6420	0.757	0.4191	No
248	RBBP5	6454	0.749	0.4177	No
249	TAF12	6565	0.719	0.4120	No
250	POP7	6593	0.711	0.4110	No
251	ERCC3	6652	0.699	0.4082	No
252	OGG1	6817	0.655	0.3995	No
253	DDX19B	6838	0.650	0.3988	No
254	TOP1	6905	0.631	0.3955	No
255	RALY	7079	0.591	0.3864	No
256	HNRPF	7168	0.567	0.3819	No
257	EXOSC3	7174	0.566	0.3819	No
258	SHFM1	7190	0.562	0.3814	No
259	TAF11	7313	0.533	0.3750	No
260	GTF3C2	7483	0.488	0.3660	No
261	HMGB2	7503	0.482	0.3652	No
262	TERT	7582	0.465	0.3612	No
263	TOP2B	7594	0.461	0.3609	No
264	RTCD1	7672	0.439	0.3569	No
265	UBE2I	7676	0.438	0.3570	No
266	NCOA6	7835	0.394	0.3485	No
267	CDC23	7972	0.365	0.3412	No
268	HIPK2	8023	0.353	0.3387	No
269	RPL36	8077	0.339	0.3360	No
270	MED12	8198	0.304	0.3296	No
271	NFYC	8214	0.299	0.3289	No
272	DDX24	8224	0.296	0.3286	No
273	SAP30	8258	0.288	0.3269	No
274	SMARCB1	8603	0.208	0.3081	No
275	H2AFY	8627	0.202	0.3070	No
276	XPO1	8722	0.178	0.3019	No
277	KIN	8791	0.163	0.2983	No
278	NUP98	8813	0.159	0.2972	No
279	SP100	8820	0.157	0.2970	No
280	SF3B4	8944	0.128	0.2903	No
281	DMC1	9027	0.105	0.2858	No
282	HOXC10	9098	0.086	0.2821	No
283	EPAS1	9487	-0.019	0.2607	No
284	POLA1	9723	-0.077	0.2479	No
285	TEP1	9743	-0.082	0.2469	No
286	NUP153	9802	-0.101	0.2437	No
287	SNW1	9803	-0.101	0.2438	No
288	PMF1	9819	-0.107	0.2430	No
289	POLH	9902	-0.129	0.2386	No
290	FOXE3	9958	-0.143	0.2357	No
291	TOPBP1	9989	-0.149	0.2341	No
292	NPC1	10201	-0.199	0.2226	No
293	NAP1L3	10329	-0.226	0.2158	No
294	ATXN1	10372	-0.234	0.2136	No
295	TFIP11	10382	-0.236	0.2132	No
296	SREBF1	10461	-0.251	0.2091	No
297	PURA	10543	-0.271	0.2048	No
298	CDC26	10622	-0.289	0.2007	No
299	THRAP3	10854	-0.346	0.1882	No
300	HTATIP	10913	-0.364	0.1852	No
301	ATXN3	11069	-0.401	0.1769	No
302	PTF1A	11131	-0.416	0.1738	No
303	TERF2IP	11186	-0.431	0.1711	No
304	NEK11	11382	-0.481	0.1606	No
305	SMAD2	11415	-0.487	0.1591	No
306	RPS7	11469	-0.500	0.1565	No
307	DNAJB9	11556	-0.522	0.1521	No
308	SNRPB2	11642	-0.546	0.1477	No
309	WRN	11741	-0.574	0.1427	No
310	PHF21A	11886	-0.615	0.1351	No
311	CHMP1A	11932	-0.628	0.1330	No
312	SENP2	12074	-0.670	0.1256	No
313	EXOSC9	12244	-0.714	0.1167	No
314	DYRK1A	12335	-0.746	0.1122	No
315	SFRS2IP	12521	-0.806	0.1025	No
316	GNAZ	12525	-0.808	0.1028	No
317	XRCC6	12541	-0.812	0.1025	No
318	SMARCA4	12552	-0.815	0.1024	No
319	FGF18	12676	-0.851	0.0961	No
320	SMARCD1	12724	-0.866	0.0940	No
321	HNRPUL1	12960	-0.932	0.0816	No
322	KPNA1	12962	-0.933	0.0821	No
323	DHCR7	13002	-0.944	0.0805	No
324	TAF6L	13014	-0.948	0.0804	No
325	NAP1L2	13294	-1.050	0.0657	No
326	NDUFA13	13334	-1.064	0.0642	No
327	PHB	13379	-1.079	0.0624	No
328	NOL4	13384	-1.081	0.0628	No
329	NLRP5	13497	-1.126	0.0573	No
330	NPM2	13529	-1.139	0.0562	No
331	ING2	13597	-1.170	0.0532	No
332	ELP4	13642	-1.188	0.0515	No
333	ANAPC11	13854	-1.270	0.0406	No
334	RPL11	14015	-1.328	0.0326	No
335	NXT1	14052	-1.341	0.0313	No
336	NFYA	14396	-1.477	0.0133	No
337	ISG20	14584	-1.557	0.0039	No
338	CBX1	14637	-1.593	0.0020	No
339	NUFIP1	14648	-1.599	0.0024	No
340	TOPORS	14649	-1.599	0.0033	No
341	POLR2B	14675	-1.616	0.0028	No
342	SMG6	14694	-1.624	0.0028	No
343	NOL3	14789	-1.674	-0.0014	No
344	STAG3	14828	-1.701	-0.0026	No
345	RBM14	15023	-1.811	-0.0122	No
346	TMPO	15053	-1.827	-0.0127	No
347	ABL1	15100	-1.861	-0.0142	No
348	ZNF148	15121	-1.881	-0.0142	No
349	CIB1	15143	-1.893	-0.0143	No
350	ELF4	15152	-1.898	-0.0136	No
351	RPL35	15198	-1.936	-0.0150	No
352	MYO6	15199	-1.937	-0.0139	No
353	NOD2	15202	-1.939	-0.0129	No
354	PPARGC1A	15223	-1.951	-0.0129	No
355	SPTBN4	15238	-1.959	-0.0125	No
356	PDCD7	15240	-1.962	-0.0115	No
357	CBX5	15290	-2.008	-0.0130	No
358	TAF7	15476	-2.150	-0.0219	No
359	ZBTB16	15483	-2.155	-0.0210	No
360	EMD	15521	-2.178	-0.0218	No
361	TTN	15564	-2.218	-0.0229	No
362	KLHL7	15588	-2.238	-0.0228	No
363	POLR3K	15639	-2.284	-0.0243	No
364	ZNF346	15754	-2.386	-0.0292	No
365	XRCC4	15793	-2.429	-0.0299	No
366	RBPJ	15794	-2.430	-0.0285	No
367	FZR1	15823	-2.455	-0.0286	No
368	MPHOSPH10	15861	-2.494	-0.0292	No
369	CCNT1	15870	-2.503	-0.0282	No
370	ELL2	16008	-2.674	-0.0342	No
371	MCRS1	16051	-2.723	-0.0350	No
372	HDAC11	16233	-2.946	-0.0432	No
373	DEDD	16293	-3.024	-0.0448	No
374	HDAC8	16401	-3.219	-0.0488	No
375	TAF10	16402	-3.220	-0.0470	No
376	MEN1	16423	-3.244	-0.0462	No
377	DULLARD	16479	-3.334	-0.0473	No
378	APTX	16505	-3.388	-0.0467	No
379	RB1	16529	-3.437	-0.0460	No
380	PSEN1	16794	-3.909	-0.0583	No
381	SMARCD2	16797	-3.912	-0.0562	No
382	PURB	16872	-4.070	-0.0579	No
383	WTAP	16884	-4.100	-0.0562	No
384	ERCC4	16893	-4.124	-0.0543	No
385	BNIP2	16899	-4.130	-0.0522	No
386	TAF13	16957	-4.266	-0.0529	No
387	REPIN1	17000	-4.388	-0.0527	No
388	RELA	17065	-4.586	-0.0536	No
389	LBR	17068	-4.598	-0.0510	No
390	HDAC7A	17077	-4.617	-0.0488	No
391	ERCC5	17123	-4.746	-0.0486	No
392	JUN	17135	-4.762	-0.0465	No
393	HDAC9	17284	-5.180	-0.0516	No
394	EZH2	17294	-5.203	-0.0491	No
395	DDX54	17300	-5.230	-0.0464	No
396	HES6	17412	-5.550	-0.0494	No
397	RBM39	17426	-5.574	-0.0469	No
398	CDK9	17439	-5.654	-0.0443	No
399	SMUG1	17441	-5.666	-0.0411	No
400	RGS12	17456	-5.738	-0.0386	No
401	MDM2	17547	-6.062	-0.0401	No
402	NFYB	17634	-6.332	-0.0412	No
403	PPP1R9B	17682	-6.443	-0.0401	No
404	PML	17701	-6.528	-0.0373	No
405	YEATS4	17724	-6.644	-0.0347	No
406	GEMIN7	17734	-6.686	-0.0314	No
407	PSEN2	17754	-6.742	-0.0286	No
408	HDAC5	17766	-6.776	-0.0253	No
409	ASF1A	17797	-6.919	-0.0230	No
410	HRB	17818	-7.022	-0.0201	No
411	GIT2	17890	-7.395	-0.0198	No
412	HCLS1	17891	-7.404	-0.0155	No
413	EPC1	17947	-7.671	-0.0141	No
414	DEDD2	17983	-7.810	-0.0116	No
415	ERCC2	17992	-7.856	-0.0075	No
416	ARNTL	18007	-7.954	-0.0038	No
417	NRM	18049	-8.219	-0.0013	No
418	SMAD4	18108	-8.699	0.0005	No
419	BNIP3L	18146	-9.020	0.0036	No
420	LMO4	18154	-9.070	0.0084	No
421	LIG4	18180	-9.284	0.0124	No
422	TP53	18216	-9.624	0.0159	No
423	RTN4	18294	-10.460	0.0177	No