Details for gene set NUCLEAR

Table: GSEA Results Summary

Dataset	set04_transDMpreB_versus_WTpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	NUCLEAR_LUMEN
Enrichment Score (ES)	0.54968876
Normalized Enrichment Score (NES)	2.114121
Nominal p-value	0.0
FDR q-value	6.2689374E-5
FWER p-Value	0.0010

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDKN2A	0	53.800	0.0477	Yes
2	IKBKAP	30	18.923	0.0629	Yes
3	NOL1	31	18.917	0.0797	Yes
4	CIRH1A	45	17.130	0.0942	Yes
5	GNL3	53	16.799	0.1087	Yes
6	EXOSC1	90	14.634	0.1197	Yes
7	NOL6	97	14.194	0.1320	Yes
8	MYBBP1A	98	14.156	0.1445	Yes
9	NOLA2	103	13.964	0.1567	Yes
10	RPP38	105	13.842	0.1689	Yes
11	RRP9	128	13.247	0.1795	Yes
12	SDAD1	131	13.197	0.1911	Yes
13	U2AF1	184	11.817	0.1987	Yes
14	LYAR	201	11.440	0.2080	Yes
15	DDX21	240	10.796	0.2155	Yes
16	CPSF1	260	10.576	0.2238	Yes
17	MKI67IP	293	10.191	0.2311	Yes
18	NOLA3	310	9.971	0.2391	Yes
19	GTF2H4	314	9.906	0.2477	Yes
20	POLR3H	329	9.824	0.2557	Yes
21	WDHD1	332	9.784	0.2642	Yes
22	CHAF1B	339	9.719	0.2725	Yes
23	GEMIN5	352	9.516	0.2803	Yes
24	ELP3	360	9.459	0.2883	Yes
25	PPARGC1B	362	9.444	0.2966	Yes
26	MPG	363	9.439	0.3050	Yes
27	NOLC1	378	9.329	0.3125	Yes
28	NCL	390	9.246	0.3201	Yes
29	XRN2	395	9.212	0.3281	Yes
30	RUVBL1	414	9.053	0.3351	Yes
31	RUVBL2	469	8.535	0.3397	Yes
32	CDK8	483	8.450	0.3465	Yes
33	ERCC8	506	8.311	0.3527	Yes
34	POLR1E	522	8.137	0.3591	Yes
35	MORF4L2	564	7.838	0.3638	Yes
36	POLR2J	575	7.790	0.3702	Yes
37	CHAF1A	578	7.784	0.3770	Yes
38	GEMIN6	598	7.605	0.3827	Yes
39	RPA1	599	7.604	0.3894	Yes
40	NSUN2	603	7.571	0.3960	Yes
41	ASH2L	651	7.277	0.3999	Yes
42	GTF2H1	671	7.198	0.4052	Yes
43	MCM7	698	7.027	0.4100	Yes
44	GEMIN4	708	6.976	0.4157	Yes
45	HDAC6	720	6.919	0.4213	Yes
46	PARP1	742	6.797	0.4261	Yes
47	COIL	780	6.678	0.4301	Yes
48	NOL5A	817	6.547	0.4339	Yes
49	NARG1	821	6.535	0.4395	Yes
50	TIMM50	861	6.352	0.4430	Yes
51	POLI	937	6.030	0.4443	Yes
52	HDAC10	998	5.821	0.4462	Yes
53	GTF3C3	1005	5.800	0.4510	Yes
54	MRE11A	1007	5.796	0.4561	Yes
55	SMC3	1015	5.758	0.4608	Yes
56	TRIM27	1016	5.745	0.4659	Yes
57	GTF2F1	1058	5.591	0.4686	Yes
58	NUP54	1098	5.452	0.4713	Yes
59	NAP1L1	1102	5.432	0.4760	Yes
60	PTBP1	1135	5.338	0.4790	Yes
61	POLR2E	1154	5.265	0.4827	Yes
62	WDR4	1182	5.172	0.4858	Yes
63	IVNS1ABP	1236	5.009	0.4873	Yes
64	CLOCK	1275	4.902	0.4896	Yes
65	SURF6	1277	4.897	0.4939	Yes
66	KRR1	1328	4.756	0.4954	Yes
67	RPP30	1367	4.626	0.4974	Yes
68	SMARCC1	1403	4.506	0.4995	Yes
69	SNAPC4	1408	4.499	0.5033	Yes
70	SRP68	1430	4.450	0.5061	Yes
71	POP1	1474	4.345	0.5076	Yes
72	ILF2	1483	4.306	0.5110	Yes
73	HDAC1	1535	4.202	0.5119	Yes
74	MPHOSPH1	1536	4.202	0.5157	Yes
75	NAP1L4	1557	4.142	0.5182	Yes
76	TCOF1	1588	4.083	0.5202	Yes
77	CHEK2	1647	3.955	0.5206	Yes
78	SLC29A2	1656	3.941	0.5236	Yes
79	HDAC2	1672	3.914	0.5263	Yes
80	SMARCE1	1728	3.808	0.5267	Yes
81	GTF3C1	1751	3.763	0.5288	Yes
82	PRPF31	1783	3.699	0.5304	Yes
83	POLQ	1796	3.669	0.5330	Yes
84	POLR2A	1817	3.619	0.5351	Yes
85	HMGA1	1826	3.607	0.5379	Yes
86	SFRS2	1866	3.517	0.5389	Yes
87	FOXF2	1867	3.516	0.5420	Yes
88	RPS19	1945	3.390	0.5408	Yes
89	UBTF	1999	3.301	0.5408	Yes
90	DDX11	2055	3.212	0.5407	Yes
91	EED	2064	3.200	0.5431	Yes
92	ZNF638	2111	3.127	0.5434	Yes
93	SMARCD3	2149	3.075	0.5441	Yes
94	TAF6	2153	3.072	0.5466	Yes
95	FUSIP1	2172	3.035	0.5483	Yes
96	TBP	2197	3.003	0.5497	Yes
97	TOP2A	2322	2.831	0.5454	No
98	EXOSC10	2383	2.742	0.5446	No
99	POLR3C	2391	2.732	0.5466	No
100	KPNA2	2441	2.674	0.5463	No
101	NR6A1	2881	2.279	0.5244	No
102	MED4	2885	2.275	0.5263	No
103	GTF3C4	2979	2.196	0.5232	No
104	BNIP3	3011	2.164	0.5234	No
105	ARID1A	3070	2.125	0.5221	No
106	FMR1	3089	2.112	0.5230	No
107	CENPF	3104	2.102	0.5241	No
108	CPSF3	3114	2.093	0.5255	No
109	ACTL6A	3124	2.086	0.5268	No
110	GTF3C5	3139	2.074	0.5279	No
111	TAF5	3186	2.040	0.5272	No
112	HDAC3	3242	1.996	0.5260	No
113	EMG1	3269	1.974	0.5263	No
114	GLIS2	3282	1.966	0.5274	No
115	PHF12	3318	1.933	0.5272	No
116	NPM1	3360	1.903	0.5267	No
117	MED6	3366	1.899	0.5281	No
118	TAF4	3376	1.891	0.5293	No
119	LRCH4	3549	1.788	0.5215	No
120	NF2	3819	1.643	0.5083	No
121	IFI16	3912	1.596	0.5047	No
122	EDF1	3913	1.596	0.5061	No
123	RPL3	3963	1.574	0.5048	No
124	RSF1	4043	1.537	0.5019	No
125	ARID4A	4176	1.483	0.4960	No
126	HNRPK	4194	1.474	0.4964	No
127	DDX47	4212	1.467	0.4967	No
128	NUDT21	4245	1.454	0.4963	No
129	HIF1A	4444	1.376	0.4867	No
130	TDG	4455	1.373	0.4874	No
131	ASNA1	4514	1.346	0.4854	No
132	PRM2	4581	1.322	0.4830	No
133	TAF9	4814	1.226	0.4714	No
134	DNMT3A	5090	1.145	0.4575	No
135	RPP40	5105	1.139	0.4577	No
136	GCM1	5197	1.108	0.4537	No
137	SAP18	5230	1.100	0.4530	No
138	PAX8	5386	1.051	0.4455	No
139	NCR1	5395	1.044	0.4459	No
140	OIP5	5415	1.038	0.4458	No
141	DDX56	5449	1.028	0.4449	No
142	FIGLA	5632	0.976	0.4359	No
143	SMARCA5	5702	0.953	0.4330	No
144	NKX2-5	5827	0.918	0.4270	No
145	NPAS2	5966	0.878	0.4203	No
146	PITX2	6070	0.848	0.4154	No
147	INTS6	6219	0.809	0.4081	No
148	ACTB	6384	0.769	0.3998	No
149	RBBP5	6454	0.749	0.3967	No
150	TAF12	6565	0.719	0.3914	No
151	POP7	6593	0.711	0.3905	No
152	ERCC3	6652	0.699	0.3880	No
153	OGG1	6817	0.655	0.3796	No
154	TOP1	6905	0.631	0.3754	No
155	SHFM1	7190	0.562	0.3605	No
156	TAF11	7313	0.533	0.3543	No
157	GTF3C2	7483	0.488	0.3455	No
158	TOP2B	7594	0.461	0.3399	No
159	RTCD1	7672	0.439	0.3361	No
160	UBE2I	7676	0.438	0.3363	No
161	NCOA6	7835	0.394	0.3281	No
162	HIPK2	8023	0.353	0.3182	No
163	RPL36	8077	0.339	0.3156	No
164	MED12	8198	0.304	0.3093	No
165	NFYC	8214	0.299	0.3088	No
166	DDX24	8224	0.296	0.3085	No
167	SAP30	8258	0.288	0.3070	No
168	SMARCB1	8603	0.208	0.2884	No
169	XPO1	8722	0.178	0.2822	No
170	KIN	8791	0.163	0.2786	No
171	NUP98	8813	0.159	0.2776	No
172	SP100	8820	0.157	0.2774	No
173	EPAS1	9487	-0.019	0.2411	No
174	POLA1	9723	-0.077	0.2284	No
175	TEP1	9743	-0.082	0.2274	No
176	PMF1	9819	-0.107	0.2234	No
177	POLH	9902	-0.129	0.2191	No
178	FOXE3	9958	-0.143	0.2162	No
179	TOPBP1	9989	-0.149	0.2147	No
180	NAP1L3	10329	-0.226	0.1964	No
181	ATXN1	10372	-0.234	0.1943	No
182	TFIP11	10382	-0.236	0.1941	No
183	THRAP3	10854	-0.346	0.1687	No
184	HTATIP	10913	-0.364	0.1658	No
185	ATXN3	11069	-0.401	0.1578	No
186	PTF1A	11131	-0.416	0.1548	No
187	NEK11	11382	-0.481	0.1416	No
188	SMAD2	11415	-0.487	0.1403	No
189	RPS7	11469	-0.500	0.1378	No
190	DNAJB9	11556	-0.522	0.1336	No
191	WRN	11741	-0.574	0.1241	No
192	PHF21A	11886	-0.615	0.1168	No
193	CHMP1A	11932	-0.628	0.1149	No
194	EXOSC9	12244	-0.714	0.0986	No
195	DYRK1A	12335	-0.746	0.0943	No
196	SFRS2IP	12521	-0.806	0.0850	No
197	XRCC6	12541	-0.812	0.0846	No
198	SMARCA4	12552	-0.815	0.0848	No
199	FGF18	12676	-0.851	0.0789	No
200	SMARCD1	12724	-0.866	0.0771	No
201	TAF6L	13014	-0.948	0.0622	No
202	NAP1L2	13294	-1.050	0.0479	No
203	NDUFA13	13334	-1.064	0.0467	No
204	PHB	13379	-1.079	0.0453	No
205	NOL4	13384	-1.081	0.0460	No
206	NLRP5	13497	-1.126	0.0409	No
207	ING2	13597	-1.170	0.0365	No
208	ELP4	13642	-1.188	0.0352	No
209	RPL11	14015	-1.328	0.0161	No
210	NFYA	14396	-1.477	-0.0033	No
211	ISG20	14584	-1.557	-0.0121	No
212	CBX1	14637	-1.593	-0.0135	No
213	NUFIP1	14648	-1.599	-0.0127	No
214	TOPORS	14649	-1.599	-0.0112	No
215	POLR2B	14675	-1.616	-0.0112	No
216	NOL3	14789	-1.674	-0.0158	No
217	RBM14	15023	-1.811	-0.0269	No
218	ABL1	15100	-1.861	-0.0294	No
219	ZNF148	15121	-1.881	-0.0289	No
220	CIB1	15143	-1.893	-0.0283	No
221	ELF4	15152	-1.898	-0.0271	No
222	RPL35	15198	-1.936	-0.0278	No
223	MYO6	15199	-1.937	-0.0261	No
224	PPARGC1A	15223	-1.951	-0.0256	No
225	SPTBN4	15238	-1.959	-0.0246	No
226	TAF7	15476	-2.150	-0.0357	No
227	ZBTB16	15483	-2.155	-0.0341	No
228	KLHL7	15588	-2.238	-0.0378	No
229	POLR3K	15639	-2.284	-0.0385	No
230	ZNF346	15754	-2.386	-0.0425	No
231	RBPJ	15794	-2.430	-0.0425	No
232	MPHOSPH10	15861	-2.494	-0.0439	No
233	CCNT1	15870	-2.503	-0.0421	No
234	ELL2	16008	-2.674	-0.0472	No
235	MCRS1	16051	-2.723	-0.0471	No
236	HDAC11	16233	-2.946	-0.0543	No
237	DEDD	16293	-3.024	-0.0549	No
238	HDAC8	16401	-3.219	-0.0579	No
239	TAF10	16402	-3.220	-0.0550	No
240	MEN1	16423	-3.244	-0.0532	No
241	APTX	16505	-3.388	-0.0546	No
242	RB1	16529	-3.437	-0.0528	No
243	SMARCD2	16797	-3.912	-0.0639	No
244	TAF13	16957	-4.266	-0.0688	No
245	RELA	17065	-4.586	-0.0706	No
246	HDAC7A	17077	-4.617	-0.0671	No
247	ERCC5	17123	-4.746	-0.0653	No
248	HDAC9	17284	-5.180	-0.0694	No
249	EZH2	17294	-5.203	-0.0653	No
250	DDX54	17300	-5.230	-0.0609	No
251	HES6	17412	-5.550	-0.0621	No
252	RBM39	17426	-5.574	-0.0578	No
253	CDK9	17439	-5.654	-0.0535	No
254	SMUG1	17441	-5.666	-0.0485	No
255	MDM2	17547	-6.062	-0.0489	No
256	NFYB	17634	-6.332	-0.0479	No
257	PPP1R9B	17682	-6.443	-0.0448	No
258	PML	17701	-6.528	-0.0400	No
259	YEATS4	17724	-6.644	-0.0353	No
260	GEMIN7	17734	-6.686	-0.0298	No
261	HDAC5	17766	-6.776	-0.0255	No
262	ASF1A	17797	-6.919	-0.0210	No
263	GIT2	17890	-7.395	-0.0195	No
264	HCLS1	17891	-7.404	-0.0129	No
265	EPC1	17947	-7.671	-0.0091	No
266	DEDD2	17983	-7.810	-0.0041	No
267	ERCC2	17992	-7.856	0.0024	No
268	ARNTL	18007	-7.954	0.0087	No
269	SMAD4	18108	-8.699	0.0110	No
270	LMO4	18154	-9.070	0.0166	No
271	TP53	18216	-9.624	0.0218	No