Details for gene set V$GFI1

Table: GSEA Results Summary

Dataset	set03_absentNotch_versus_normalThy
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	V$GFI1_01
Enrichment Score (ES)	-0.46755293
Normalized Enrichment Score (NES)	-1.7198952
Nominal p-value	0.0011520737
FDR q-value	0.08873499
FWER p-Value	0.768

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP5G2	470	3.913	-0.0143	No
2	SREBF2	483	3.872	-0.0039	No
3	TMPRSS2	626	3.544	-0.0015	No
4	ABCF2	627	3.544	0.0086	No
5	CNKSR1	813	3.209	0.0077	No
6	CSAD	1217	2.639	-0.0067	No
7	MYO1C	1230	2.624	0.0002	No
8	DCX	1860	2.087	-0.0280	No
9	PDC	1904	2.064	-0.0244	No
10	USP5	1914	2.058	-0.0191	No
11	HMGA1	2154	1.926	-0.0265	No
12	MYH10	2317	1.841	-0.0301	No
13	ICAM5	2526	1.743	-0.0364	No
14	CDH13	2547	1.734	-0.0325	No
15	STMN1	2649	1.690	-0.0332	No
16	SLC25A18	2675	1.680	-0.0297	No
17	TOP1	2747	1.646	-0.0289	No
18	BAI3	3027	1.533	-0.0397	No
19	YWHAE	3091	1.513	-0.0388	No
20	TPBG	3149	1.492	-0.0376	No
21	SFRS2	3178	1.480	-0.0349	No
22	CNTN6	3180	1.480	-0.0307	No
23	TCF12	3355	1.417	-0.0361	No
24	HOXA3	3392	1.402	-0.0341	No
25	EXOC7	3393	1.402	-0.0301	No
26	TRIM23	3526	1.357	-0.0334	No
27	MCTS1	3536	1.355	-0.0300	No
28	GAS2	3689	1.302	-0.0345	No
29	AVP	3789	1.270	-0.0363	No
30	BRUNOL4	4114	1.177	-0.0505	No
31	RPS6KB1	4288	1.133	-0.0567	No
32	FOXP2	4445	1.089	-0.0620	No
33	ZIC3	4454	1.087	-0.0593	No
34	MAP2K7	4635	1.048	-0.0661	No
35	NFIA	4728	1.021	-0.0682	No
36	JPH4	4808	1.003	-0.0696	No
37	DNAJB4	4835	0.997	-0.0682	No
38	PBX1	4846	0.994	-0.0659	No
39	XPO5	4870	0.989	-0.0643	No
40	NRXN3	4871	0.989	-0.0615	No
41	PPARGC1A	4930	0.974	-0.0619	No
42	OTP	5019	0.954	-0.0639	No
43	DPF3	5037	0.950	-0.0621	No
44	NCAM1	5087	0.939	-0.0621	No
45	ZFPM2	5090	0.938	-0.0596	No
46	ZIC1	5244	0.898	-0.0653	No
47	CACNB2	5311	0.882	-0.0664	No
48	GPR20	5364	0.869	-0.0667	No
49	HOXA9	5376	0.866	-0.0648	No
50	ICAM4	5391	0.864	-0.0631	No
51	DDR2	5444	0.852	-0.0635	No
52	PRIMA1	5461	0.849	-0.0620	No
53	ANGPT1	5675	0.805	-0.0712	No
54	MBNL1	5726	0.794	-0.0717	No
55	PI15	5763	0.786	-0.0714	No
56	TLK1	5802	0.779	-0.0712	No
57	SOX9	6052	0.727	-0.0827	No
58	CLMN	6290	0.679	-0.0936	No
59	PPARGC1B	6312	0.674	-0.0928	No
60	CDH6	6337	0.668	-0.0922	No
61	ASB4	6442	0.644	-0.0960	No
62	SLC4A7	6545	0.625	-0.0998	No
63	NGEF	6596	0.616	-0.1007	No
64	PRKAG1	6793	0.571	-0.1097	No
65	HOXB8	6884	0.554	-0.1130	No
66	ITGA10	6911	0.548	-0.1129	No
67	HOXD10	6913	0.548	-0.1114	No
68	CAMK2D	6927	0.544	-0.1105	No
69	CGN	6929	0.544	-0.1090	No
70	BNC2	7154	0.501	-0.1197	No
71	HOXC8	7277	0.478	-0.1250	No
72	C1QTNF7	7330	0.465	-0.1265	No
73	TCF4	7482	0.437	-0.1334	No
74	PROCR	7544	0.426	-0.1355	No
75	SERTAD4	7554	0.424	-0.1348	No
76	PCDH8	7642	0.406	-0.1384	No
77	CRYZL1	7683	0.400	-0.1394	No
78	CACNG3	7710	0.392	-0.1397	No
79	HOXD11	7903	0.353	-0.1491	No
80	KLF15	7969	0.341	-0.1517	No
81	MTMR4	8046	0.328	-0.1549	No
82	EBF2	8223	0.296	-0.1636	No
83	DEPDC2	8259	0.290	-0.1646	No
84	DSCR1L1	8283	0.286	-0.1651	No
85	HIST1H1E	8305	0.282	-0.1654	No
86	TBR1	8315	0.281	-0.1651	No
87	MEF2C	8378	0.266	-0.1677	No
88	ITSN1	8453	0.255	-0.1710	No
89	SH3BGRL2	8525	0.238	-0.1742	No
90	SP8	8618	0.217	-0.1785	No
91	GPR17	8780	0.191	-0.1867	No
92	HOXC4	9075	0.139	-0.2023	No
93	TFEC	9104	0.133	-0.2034	No
94	PLCD4	9521	0.052	-0.2259	No
95	CALN1	9580	0.039	-0.2289	No
96	HOXB3	9844	-0.021	-0.2431	No
97	HIST1H1T	9877	-0.028	-0.2448	No
98	PURA	9884	-0.030	-0.2450	No
99	PEA15	9951	-0.047	-0.2485	No
100	GPRC5D	9974	-0.053	-0.2495	No
101	HOXB6	10122	-0.084	-0.2572	No
102	DSPP	10184	-0.098	-0.2603	No
103	PTHLH	10250	-0.112	-0.2635	No
104	SOX15	10266	-0.117	-0.2640	No
105	PHF8	10437	-0.155	-0.2727	No
106	GRK6	10681	-0.202	-0.2854	No
107	SPAG7	10703	-0.206	-0.2859	No
108	GRPR	10767	-0.220	-0.2887	No
109	TFB1M	10881	-0.245	-0.2941	No
110	GFRA3	10892	-0.247	-0.2940	No
111	BMP4	11108	-0.292	-0.3048	No
112	RKHD3	11185	-0.308	-0.3080	No
113	SGK2	11190	-0.309	-0.3074	No
114	SLC26A3	11217	-0.314	-0.3079	No
115	BCL9	11279	-0.327	-0.3103	No
116	CDON	11321	-0.335	-0.3115	No
117	HOXA6	11494	-0.371	-0.3198	No
118	POU3F1	11725	-0.424	-0.3311	No
119	SOSTDC1	11837	-0.448	-0.3358	No
120	ELAVL4	11988	-0.482	-0.3426	No
121	CDX2	12059	-0.496	-0.3450	No
122	MRGPRF	12093	-0.504	-0.3453	No
123	CHRM1	12158	-0.520	-0.3473	No
124	PHYHIP	12436	-0.589	-0.3607	No
125	PHACTR3	12640	-0.637	-0.3699	No
126	MSR1	12644	-0.637	-0.3682	No
127	RARB	12667	-0.644	-0.3676	No
128	EDN1	12729	-0.661	-0.3690	No
129	CREB5	12801	-0.678	-0.3709	No
130	BDNF	12902	-0.703	-0.3744	No
131	NEXN	12976	-0.723	-0.3763	No
132	GREM1	13152	-0.775	-0.3835	No
133	NKX2-8	13175	-0.780	-0.3825	No
134	HOXA10	13212	-0.788	-0.3822	No
135	PDLIM1	13266	-0.801	-0.3828	No
136	DSG3	13361	-0.829	-0.3855	No
137	TLR1	13532	-0.880	-0.3923	No
138	SOX5	13777	-0.957	-0.4028	No
139	NR2F2	14000	-1.030	-0.4119	No
140	RKHD1	14237	-1.113	-0.4215	No
141	TCF1	14307	-1.137	-0.4220	No
142	LUZP1	14405	-1.170	-0.4239	No
143	MEIS1	14412	-1.172	-0.4209	No
144	SOX4	15077	-1.432	-0.4529	No
145	IRX3	15078	-1.433	-0.4488	No
146	TRDN	15123	-1.452	-0.4470	No
147	CPEB3	15222	-1.495	-0.4481	No
148	ARHGEF2	15378	-1.586	-0.4520	No
149	CTLA4	15398	-1.593	-0.4484	No
150	WDR23	15429	-1.609	-0.4455	No
151	MAP2K5	15558	-1.674	-0.4476	No
152	TSGA10	15584	-1.690	-0.4442	No
153	RORA	15836	-1.839	-0.4526	No
154	PTEN	15842	-1.843	-0.4476	No
155	LAMA3	16048	-1.969	-0.4531	No
156	BCL9L	16103	-2.004	-0.4503	No
157	HNRPA0	16132	-2.037	-0.4460	No
158	PREP	16203	-2.098	-0.4438	No
159	ETS1	16445	-2.310	-0.4503	No
160	KLF12	16764	-2.638	-0.4600	Yes
161	HIVEP3	16812	-2.695	-0.4549	Yes
162	TCTA	16967	-2.886	-0.4550	Yes
163	JMJD1C	16969	-2.887	-0.4468	Yes
164	MAP4K3	16972	-2.892	-0.4387	Yes
165	ATF2	16984	-2.909	-0.4310	Yes
166	ELMO3	17053	-2.996	-0.4261	Yes
167	ADD3	17108	-3.081	-0.4203	Yes
168	IRF2BP1	17203	-3.241	-0.4161	Yes
169	RAB6B	17230	-3.281	-0.4082	Yes
170	PPP2R2A	17365	-3.532	-0.4053	Yes
171	GABARAP	17603	-4.008	-0.4068	Yes
172	POLH	17664	-4.165	-0.3981	Yes
173	AGPAT4	17669	-4.180	-0.3864	Yes
174	CREM	17917	-4.880	-0.3859	Yes
175	BPGM	17961	-4.996	-0.3740	Yes
176	MAP3K3	18023	-5.201	-0.3625	Yes
177	BRD2	18095	-5.480	-0.3507	Yes
178	ZIC4	18117	-5.585	-0.3359	Yes
179	PANK1	18186	-5.948	-0.3226	Yes
180	RHOA	18189	-5.967	-0.3057	Yes
181	HSD11B1	18294	-6.651	-0.2923	Yes
182	HBP1	18344	-7.095	-0.2747	Yes
183	PDE4D	18349	-7.162	-0.2545	Yes
184	TRAF4	18453	-8.305	-0.2364	Yes
185	MAP4K2	18455	-8.325	-0.2127	Yes
186	GADD45A	18496	-9.058	-0.1890	Yes
187	BCL6	18511	-9.435	-0.1629	Yes
188	CCR7	18521	-9.794	-0.1354	Yes
189	BTG1	18531	-10.306	-0.1065	Yes
190	EVA1	18540	-10.654	-0.0765	Yes
191	IL16	18549	-11.052	-0.0454	Yes
192	HOXA7	18589	-17.167	0.0015	Yes