Details for gene set ORGANELLE

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMpreB
GeneSet	ORGANELLE_LUMEN
Enrichment Score (ES)	-0.59680283
Normalized Enrichment Score (NES)	-1.6900349
Nominal p-value	0.0
FDR q-value	0.020667763
FWER p-Value	0.164

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PPP1R9B	20698	54	8.358	0.0137	No
2	TAP2	23282	167	6.853	0.0212	No
3	ARNTL	18119	194	6.437	0.0325	No
4	HDAC7A	22147	409	4.873	0.0305	No
5	SMARCD2	13515	410	4.868	0.0402	No
6	ISG20	18210	565	4.119	0.0399	No
7	XRCC6	2286 8991	685	3.620	0.0406	No
8	TAF12	2537 16058 2338	770	3.303	0.0426	No
9	PPARGC1A	16533	835	3.159	0.0454	No
10	HCLS1	22770	850	3.123	0.0508	No
11	ETFB	18279	858	3.110	0.0566	No
12	ATXN1	21477	918	2.967	0.0593	No
13	SMAD4	5058	952	2.856	0.0632	No
14	ASF1A	20025	1003	2.732	0.0659	No
15	SMARCA4	19538	1053	2.610	0.0684	No
16	MEN1	3716 9382	1123	2.464	0.0695	No
17	PMF1	12452	1266	2.180	0.0661	No
18	MYO6	19368	1300	2.140	0.0685	No
19	NFYB	5173	1425	1.933	0.0656	No
20	PARP1	8559 14027	1518	1.793	0.0641	No
21	HDAC11	17356	1584	1.706	0.0639	No
22	HDAC1	9081	1596	1.694	0.0667	No
23	ZNF346	3163 6517 3193	1600	1.692	0.0699	No
24	WRN	5882 10315	1638	1.634	0.0711	No
25	ARID1A	8214 2501 13554	1644	1.632	0.0741	No
26	TOP2A	20257	1662	1.616	0.0764	No
27	HDAC5	1480 20205	1878	1.318	0.0672	No
28	NDUFA13	7400	1986	1.183	0.0637	No
29	EDF1	2890 12224	2003	1.166	0.0652	No
30	EPC1	2039 8907 2033	2057	1.107	0.0645	No
31	TRIM27	3264 9720	2170	1.011	0.0604	No
32	ACTL6A	12136 13068 16662 3457 3554	2230	0.994	0.0591	No
33	GTF3C1	10607 17646	2240	0.988	0.0606	No
34	EXOSC10	2482 11943	2264	0.971	0.0613	No
35	NOL6	2385 2405 15913 2466	2270	0.968	0.0629	No
36	RSF1	18181	2279	0.957	0.0644	No
37	RELA	23783	2280	0.956	0.0663	No
38	RPL11	12450	2294	0.939	0.0674	No
39	RBM14	3673 12087	2384	0.860	0.0643	No
40	SMAD2	23511	2417	0.844	0.0642	No
41	ZNF148	5949	2443	0.819	0.0645	No
42	NUP54	11231 11232 6516	2456	0.810	0.0654	No
43	RBM39	9316 5032	2517	0.767	0.0637	No
44	SAP30	18871	2525	0.761	0.0648	No
45	HIPK2	17180	2530	0.756	0.0661	No
46	NAP1L4	17543	2564	0.729	0.0657	No
47	CHMP1A	10634	2589	0.706	0.0658	No
48	SFRS2IP	7794 13009	2590	0.706	0.0672	No
49	HNRPK	9106 9105 3265 4861	2623	0.682	0.0668	No
50	NAP1L3	24266	2625	0.681	0.0681	No
51	MED12	24277	2635	0.675	0.0690	No
52	GIT2	11174 6462	2707	0.620	0.0663	No
53	RPS7	9760	2717	0.614	0.0670	No
54	DDX11	23169	2798	0.556	0.0638	No
55	PHF12	11192 6483	2877	0.514	0.0605	No
56	DDX47	17261 12577 1133	2881	0.513	0.0614	No
57	SRP68	20143	2925	0.491	0.0600	No
58	APTX	2455 7291	2961	0.469	0.0590	No
59	RB1	21754	3054	0.430	0.0548	No
60	SMC3	8811 23815 8812 4571	3078	0.421	0.0544	No
61	HDAC3	4844	3186	0.367	0.0493	No
62	SHFM1	17220	3207	0.359	0.0489	No
63	MRPS11	12621 3150	3214	0.357	0.0493	No
64	ING2	18877	3323	0.313	0.0440	No
65	TOP1	5790 5789 10210	3426	0.279	0.0390	No
66	TAF13	8288	3504	0.259	0.0353	No
67	OPA1	13169 22800 7894	3647	0.223	0.0280	No
68	NR3C1	9043	3766	0.197	0.0219	No
69	ABL1	2693 4301 2794	3847	0.181	0.0179	No
70	NAP1L1	19882 3427 330 9485 5193	3848	0.181	0.0183	No
71	ARID4A	2080 6215	3932	0.164	0.0140	No
72	CCNT1	22140 11607	3966	0.159	0.0125	No
73	MRPS35	17237 1068	3991	0.154	0.0115	No
74	HS3ST1	16542	4203	0.122	0.0002	No
75	FOXE3	15801	4280	0.113	-0.0037	No
76	CASQ1	13752 8695	4301	0.111	-0.0046	No
77	PML	3015 3074 3020 5270	4333	0.107	-0.0060	No
78	GTF3C2	7749	4384	0.102	-0.0086	No
79	TEP1	21849	4385	0.102	-0.0084	No
80	PTF1A	15110	4448	0.096	-0.0116	No
81	NKX2-5	23060	4522	0.090	-0.0154	No
82	NCOA6	2876 14382	4570	0.087	-0.0178	No
83	ATXN3	21001 2051	4637	0.082	-0.0212	No
84	PITRM1	21710	5178	0.057	-0.0506	No
85	ELP4	8094	5241	0.055	-0.0539	No
86	NOL4	2028 11432	5682	0.042	-0.0779	No
87	SMARCD1	2241 22360 2250	5811	0.038	-0.0848	No
88	NOL3	18496 915 921	5871	0.037	-0.0880	No
89	ETFA	4292 8495 3155	5876	0.037	-0.0881	No
90	FGF18	4721 1351	5899	0.036	-0.0893	No
91	MDM2	19620 3327	5991	0.034	-0.0942	No
92	NAP1L2	24087	6021	0.034	-0.0957	No
93	RPL35	12360	6061	0.033	-0.0978	No
94	TFB2M	4024 9092 4083	6107	0.032	-0.1001	No
95	ZBTB16	10647	6151	0.031	-0.1024	No
96	CLOCK	8749 16507 4530	6452	0.026	-0.1188	No
97	EZH2	1092 17163	6473	0.025	-0.1198	No
98	SPTBN4	13471 1104	6776	0.020	-0.1363	No
99	NLRP5	10743 18358	6822	0.019	-0.1387	No
100	POLA1	24112	6832	0.019	-0.1392	No
101	TAF7	6287 1968	7028	0.016	-0.1498	No
102	PITX2	15424 1878	7144	0.014	-0.1561	No
103	GEMIN6	12492 7415	7235	0.013	-0.1610	No
104	DEDD	14056	7301	0.012	-0.1645	No
105	CALR	18814	7306	0.012	-0.1647	No
106	MRPS36	7257	7611	0.008	-0.1813	No
107	RBPJ	9709 3594 5370	7626	0.008	-0.1821	No
108	TDG	10107 5703	7879	0.004	-0.1958	No
109	HIF1A	4850	8051	0.002	-0.2052	No
110	TAF9	3213 8433	8410	-0.003	-0.2248	No
111	SMARCA5	8215	8411	-0.003	-0.2247	No
112	UBE2I	5819 5820	8424	-0.003	-0.2254	No
113	GATM	14451	8459	-0.004	-0.2272	No
114	NCR1	18409	8522	-0.004	-0.2306	No
115	ELF4	24162	8590	-0.005	-0.2343	No
116	EPAS1	23144	8593	-0.005	-0.2344	No
117	GLIS2	8179 13500	8908	-0.009	-0.2515	No
118	EXOSC9	15610	8974	-0.010	-0.2551	No
119	NFYA	5172	9211	-0.013	-0.2679	No
120	CBX1	8704 19044	9429	-0.016	-0.2798	No
121	POLR2B	16817	9561	-0.017	-0.2869	No
122	HDAC6	24197	9620	-0.018	-0.2900	No
123	PHB	9558	9670	-0.019	-0.2927	No
124	FIGLA	17383	9778	-0.020	-0.2985	No
125	MRPS22	19031	9911	-0.022	-0.3057	No
126	ELL2	5329	9920	-0.022	-0.3061	No
127	RCN1	9710	9946	-0.022	-0.3074	No
128	POLR3K	12447 7372	10060	-0.024	-0.3135	No
129	NDUFS1	13940	10315	-0.028	-0.3274	No
130	HDAC9	21084 2131	10398	-0.029	-0.3318	No
131	FMR1	24321	10441	-0.030	-0.3340	No
132	NFYC	9460	10527	-0.031	-0.3386	No
133	XPO1	4172	10543	-0.031	-0.3394	No
134	RTCD1	15183	10600	-0.032	-0.3424	No
135	WDR4	1629 1521 12190 7175	10697	-0.034	-0.3476	No
136	TAF4	14319	10887	-0.037	-0.3578	No
137	NPM1	1196	11078	-0.040	-0.3681	No
138	CPSF3	7038	11079	-0.040	-0.3680	No
139	MPHOSPH10	17805	11155	-0.042	-0.3721	No
140	TOPBP1	10659	11174	-0.042	-0.3730	No
141	DNMT3A	2167 21330	11537	-0.050	-0.3927	No
142	BNIP3	17581	11567	-0.050	-0.3941	No
143	IFI16	13745	11651	-0.052	-0.3986	No
144	PAX8	2791 14671	11761	-0.055	-0.4044	No
145	NUFIP1	21955	11775	-0.055	-0.4050	No
146	ERCC2	1549 18363 3812	12015	-0.061	-0.4180	No
147	DDX56	6984	12051	-0.062	-0.4198	No
148	NEK11	3099 19016	12174	-0.066	-0.4263	No
149	GTF2H1	4069 18236	12248	-0.068	-0.4302	No
150	DNAJB9	6565	12262	-0.069	-0.4307	No
151	NF2	1222 5166	12334	-0.070	-0.4345	No
152	GCM1	19372	12443	-0.074	-0.4402	No
153	DBT	1770 4599	12814	-0.087	-0.4603	No
154	SAP18	5406	12965	-0.094	-0.4683	No
155	OGG1	17331	12972	-0.094	-0.4685	No
156	XRN2	2936 6302 2905	13107	-0.100	-0.4756	No
157	MBTPS1	18730 3809 3770	13377	-0.114	-0.4901	No
158	GEMIN7	17944	13533	-0.124	-0.4983	No
159	THRAP3	6062	13795	-0.145	-0.5123	No
160	CENPF	13723	13878	-0.153	-0.5165	No
161	BCKDHA	17925	13915	-0.155	-0.5181	No
162	NPAS2	5186	14006	-0.166	-0.5227	No
163	TIMM23	7004 5768	14210	-0.186	-0.5335	No
164	GRPEL1	16863	14248	-0.191	-0.5351	No
165	LRCH4	10544 6090	14274	-0.194	-0.5361	No
166	SP100	5482	14287	-0.196	-0.5363	No
167	PRM2	9621	14365	-0.206	-0.5402	No
168	ZNF638	9476	14406	-0.211	-0.5419	No
169	SMARCD3	12446	14444	-0.216	-0.5435	No
170	PHF21A	14943	14453	-0.218	-0.5435	No
171	SMARCB1	19728	14516	-0.227	-0.5465	No
172	DYRK1A	4649	14547	-0.232	-0.5476	No
173	TFIP11	16746	14582	-0.238	-0.5490	No
174	HTATIP	3690	14601	-0.241	-0.5495	No
175	RBBP5	5620 5619	14653	-0.249	-0.5518	No
176	CDK8	6455 6456 3585 3542	14763	-0.266	-0.5573	No
177	POLQ	13407 22768	14850	-0.283	-0.5614	No
178	MRPS16	12311	14866	-0.287	-0.5616	No
179	HSD3B2	4873 4874 15229 4875 9126	14889	-0.293	-0.5623	No
180	HDAC8	24090	15017	-0.322	-0.5686	No
181	DNAJA3	1732 13518	15085	-0.345	-0.5716	No
182	HSD3B1	15227	15098	-0.348	-0.5715	No
183	DEDD2	7429	15123	-0.354	-0.5721	No
184	OIP5	2919 14468	15153	-0.364	-0.5730	No
185	TAF5	23833 5934 3759	15310	-0.414	-0.5807	No
186	TAF6L	5923	15321	-0.418	-0.5804	No
187	GTF3C5	14638 2685	15393	-0.437	-0.5834	No
188	NFS1	2903 14377	15562	-0.512	-0.5916	No
189	MORF4L2	12118	15611	-0.530	-0.5932	No
190	ILF2	12582	15668	-0.558	-0.5951	No
191	RPL3	11330	15672	-0.561	-0.5942	No
192	POLR3C	15235	15694	-0.573	-0.5942	No
193	HDAC2	20055	15743	-0.602	-0.5956	Yes
194	HMGA1	23323	15756	-0.608	-0.5951	Yes
195	NUP98	17726	15764	-0.613	-0.5942	Yes
196	ACTB	8534 337 337 338	15789	-0.622	-0.5943	Yes
197	KIN	15120	15797	-0.626	-0.5934	Yes
198	TXNDC4	15886	15827	-0.643	-0.5937	Yes
199	RPA1	20349	15833	-0.646	-0.5927	Yes
200	TOP2B	5791	15861	-0.663	-0.5929	Yes
201	POLH	22966	15875	-0.676	-0.5923	Yes
202	RPP40	21491	15878	-0.678	-0.5910	Yes
203	BCKDK	18061 1391	15904	-0.691	-0.5910	Yes
204	MRPS21	12323	15917	-0.704	-0.5903	Yes
205	GNL3	21894 3356	15933	-0.716	-0.5897	Yes
206	SEP15	13527 1895 15398	15953	-0.728	-0.5893	Yes
207	MRPS18C	12728	15975	-0.744	-0.5889	Yes
208	POLR2A	5394	16021	-0.780	-0.5898	Yes
209	PRPF31	7594	16026	-0.782	-0.5885	Yes
210	HSP90B1	19657	16032	-0.789	-0.5872	Yes
211	SFRS2	9807 20136	16049	-0.798	-0.5865	Yes
212	TP53	20822	16099	-0.845	-0.5875	Yes
213	MRPL51	12361 7301	16140	-0.877	-0.5879	Yes
214	KLHL7	16907	16154	-0.886	-0.5869	Yes
215	CS	19839	16237	-0.958	-0.5895	Yes
216	SMUG1	22109	16270	-0.979	-0.5893	Yes
217	MRPS10	7229 12261 23212	16306	-0.998	-0.5892	Yes
218	INTS6	5184 126	16328	-1.004	-0.5884	Yes
219	NR6A1	14596	16446	-1.089	-0.5926	Yes
220	ERCC5	14255 4097	16472	-1.117	-0.5917	Yes
221	MPHOSPH1	23878	16518	-1.162	-0.5919	Yes
222	CHAF1A	23188	16523	-1.168	-0.5898	Yes
223	EMG1	1016 17005	16554	-1.203	-0.5890	Yes
224	CDK9	14619	16575	-1.224	-0.5877	Yes
225	TOPORS	15920	16586	-1.232	-0.5858	Yes
226	NUDT21	12665	16589	-1.233	-0.5835	Yes
227	IVNS1ABP	4384 4050	16604	-1.245	-0.5818	Yes
228	SMARCE1	1218 20253	16637	-1.287	-0.5809	Yes
229	PTBP1	5303	16652	-1.298	-0.5791	Yes
230	NDUFAB1	7667	16683	-1.340	-0.5781	Yes
231	SLC29A2	23775	16781	-1.468	-0.5805	Yes
232	TAF6	16322 891	16824	-1.518	-0.5798	Yes
233	ERCC3	23605	16832	-1.531	-0.5771	Yes
234	ATP5F1	15212	16834	-1.531	-0.5741	Yes
235	TAF11	12733	16854	-1.553	-0.5721	Yes
236	ASH2L	6212	16898	-1.602	-0.5712	Yes
237	MED4	21962	16909	-1.613	-0.5686	Yes
238	NARG1	7934 917	16919	-1.628	-0.5658	Yes
239	MCRS1	6961 6960 6962	16941	-1.640	-0.5637	Yes
240	UBTF	1313 10052	16954	-1.660	-0.5611	Yes
241	SURF6	9945	16970	-1.677	-0.5586	Yes
242	TCOF1	5660	16995	-1.697	-0.5565	Yes
243	TBP	671 1554	17049	-1.751	-0.5559	Yes
244	ELP3	21782	17066	-1.770	-0.5533	Yes
245	GTF3C4	14635 6521	17079	-1.786	-0.5504	Yes
246	POLR2E	3325 19699	17108	-1.814	-0.5483	Yes
247	KPNA2	9245	17119	-1.840	-0.5452	Yes
248	MCM7	9372 3568	17165	-1.899	-0.5439	Yes
249	TAF10	10785	17191	-1.953	-0.5414	Yes
250	NCL	5153 13899	17193	-1.954	-0.5376	Yes
251	RPL36	12024	17194	-1.957	-0.5337	Yes
252	YEATS4	19621	17246	-2.036	-0.5324	Yes
253	MED6	21028	17262	-2.057	-0.5291	Yes
254	GTF3C3	418	17298	-2.102	-0.5269	Yes
255	SNAPC4	10424	17301	-2.106	-0.5228	Yes
256	CHAF1B	22694	17323	-2.136	-0.5197	Yes
257	MRE11A	3014 19560	17360	-2.192	-0.5173	Yes
258	DDX54	7778	17369	-2.212	-0.5134	Yes
259	MRPL52	22019	17382	-2.244	-0.5096	Yes
260	ACN9	12920	17389	-2.256	-0.5054	Yes
261	ACADM	15133 1800	17408	-2.289	-0.5018	Yes
262	HES6	13882 4058	17421	-2.302	-0.4979	Yes
263	PIN4	12817	17424	-2.304	-0.4935	Yes
264	COIL	20708	17429	-2.319	-0.4891	Yes
265	TRPC4AP	14379 12125	17438	-2.336	-0.4849	Yes
266	GEMIN4	6592 6591	17440	-2.337	-0.4803	Yes
267	FOXF2	21677	17449	-2.352	-0.4760	Yes
268	CHEK2	16751 3587	17471	-2.381	-0.4724	Yes
269	RPS19	5398	17473	-2.393	-0.4677	Yes
270	POLR3H	13460 8135	17517	-2.467	-0.4652	Yes
271	POP7	16329	17535	-2.487	-0.4612	Yes
272	MPG	20929	17545	-2.506	-0.4567	Yes
273	ASNA1	18810	17565	-2.554	-0.4527	Yes
274	MRPL23	9738	17587	-2.604	-0.4486	Yes
275	GTF2F1	13599	17601	-2.652	-0.4441	Yes
276	EED	17759	17611	-2.674	-0.4392	Yes
277	MRPL10	20681	17616	-2.689	-0.4341	Yes
278	FUSIP1	4715 16036	17627	-2.708	-0.4293	Yes
279	KRR1	6989 3313	17656	-2.756	-0.4253	Yes
280	RPP30	23877	17670	-2.802	-0.4205	Yes
281	POLI	23410	17682	-2.820	-0.4155	Yes
282	MRPL55	20864	17704	-2.876	-0.4109	Yes
283	POLR2J	16672	17714	-2.890	-0.4057	Yes
284	ALDH4A1	16011	17729	-2.920	-0.4006	Yes
285	TIMM50	17911	17731	-2.923	-0.3949	Yes
286	CPSF1	22241	17788	-3.055	-0.3919	Yes
287	GEMIN5	20439	17808	-3.106	-0.3867	Yes
288	MRPL40	22641	17822	-3.132	-0.3812	Yes
289	POP1	2214 7482	17854	-3.197	-0.3766	Yes
290	MRPS28	15377	17868	-3.242	-0.3708	Yes
291	DDX24	2084 20995	17870	-3.254	-0.3644	Yes
292	TIMM44	3858 18941	17877	-3.270	-0.3582	Yes
293	HTRA2	1122 17103	17888	-3.309	-0.3522	Yes
294	CIB1	17780	17924	-3.424	-0.3473	Yes
295	NOLC1	7704	17970	-3.562	-0.3427	Yes
296	PPARGC1B	9318	17982	-3.595	-0.3362	Yes
297	BCKDHB	19365	18002	-3.653	-0.3299	Yes
298	MRPS15	2442 12345	18006	-3.673	-0.3228	Yes
299	POLG2	20180	18020	-3.703	-0.3161	Yes
300	SMARCC1	9834 5459	18058	-3.805	-0.3106	Yes
301	U2AF1	8431	18097	-3.895	-0.3049	Yes
302	RUVBL1	7131 7130	18114	-3.963	-0.2979	Yes
303	MRPS18A	23222	18138	-4.099	-0.2911	Yes
304	MRPS24	12262	18147	-4.124	-0.2833	Yes
305	ERCC8	12982 3255 3187	18168	-4.177	-0.2761	Yes
306	MRPS12	17907 6273	18170	-4.188	-0.2678	Yes
307	WDHD1	21859	18185	-4.244	-0.2601	Yes
308	GTF2H4	22999	18232	-4.438	-0.2538	Yes
309	NSUN2	21610	18235	-4.448	-0.2451	Yes
310	HDAC10	22165	18251	-4.503	-0.2370	Yes
311	CDKN2A	2491 15841	18258	-4.529	-0.2283	Yes
312	RPP38	14698	18269	-4.594	-0.2197	Yes
313	LMO4	15151	18276	-4.622	-0.2109	Yes
314	CYCS	8821	18295	-4.703	-0.2025	Yes
315	LYAR	16856	18298	-4.718	-0.1932	Yes
316	DDX21	19751	18319	-4.864	-0.1847	Yes
317	NOLA3	14914	18332	-4.963	-0.1755	Yes
318	IKBKAP	2540 6045	18355	-5.096	-0.1665	Yes
319	RUVBL2	9766	18377	-5.196	-0.1574	Yes
320	SUPV3L1	11677	18382	-5.212	-0.1472	Yes
321	MRPL12	12090	18479	-6.051	-0.1404	Yes
322	NOL5A	12474	18495	-6.196	-0.1289	Yes
323	SDAD1	16479	18522	-6.466	-0.1175	Yes
324	MKI67IP	7509	18528	-6.554	-0.1048	Yes
325	EXOSC1	12379	18542	-6.761	-0.0920	Yes
326	CIRH1A	18478	18552	-6.956	-0.0787	Yes
327	MYBBP1A	5217 1232 5216	18575	-7.601	-0.0648	Yes
328	POLR1E	7226	18581	-7.664	-0.0498	Yes
329	RRP9	19328	18590	-8.020	-0.0343	Yes
330	NOLA2	11972	18591	-8.102	-0.0182	Yes
331	NOL1	8472 17280	18608	-9.838	0.0004	Yes