DatasetSet_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls
#transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls
#transDMproB_versus_transDMpreB_repos
Phenotypephenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in classtransDMpreB
GeneSetNUCLEAR_PART
Enrichment Score (ES)-0.5746354
Normalized Enrichment Score (NES)-1.6516801
Nominal p-value0.0
FDR q-value0.029834606
FWER p-Value0.356
Table: GSEA Results Summary



Fig 1: Enrichment plot: NUCLEAR_PART   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PPP1R9B20698548.3580.0102No
2ARNTL181191946.4370.0128No
3BNIP3L217753575.2010.0121No
4H2AFY214473705.0760.0195No
5HDAC7A221474094.8730.0251No
6SMARCD2135154104.8680.0328No
7REPIN1122204154.8510.0402No
8ISG20182105654.1190.0386No
9PSEN2137365953.9550.0432No
10RGS1216872 35346793.6460.0444No
11XRCC62286 89916853.6200.0499No
12RALY2718 96907193.4860.0536No
13LBR137327493.3870.0573No
14TAF122537 16058 23387703.3030.0615No
15PPARGC1A165338353.1590.0629No
16HCLS1227708503.1230.0671No
17ATXN1214779182.9670.0681No
18SMAD450589522.8560.0708No
19LIG4114549562.8520.0752No
20ASF1A2002510032.7320.0770No
21FZR112107 1967510062.7200.0811No
22SMARCA41953810532.6100.0827No
23MEN13716 938211232.4640.0828No
24JUN1583212032.3020.0821No
25PMF11245212662.1800.0822No
26MYO61936813002.1400.0838No
27HRB14208 406614111.9500.0808No
28NFYB517314251.9330.0831No
29DHCR71799915171.7940.0810No
30PARP18559 1402715181.7930.0838No
31HDAC111735615841.7060.0829No
32HDAC1908115961.6940.0850No
33ZNF3463163 6517 319316001.6920.0875No
34SMG611916151.6640.0894No
35WRN5882 1031516381.6340.0908No
36ARID1A8214 2501 1355416441.6320.0931No
37MRPL197086 708716451.6310.0956No
38HNRPH112222 1486 1220 7202 720116541.6270.0978No
39TOP2A2025716621.6160.0999No
40HDAC51480 2020518781.3180.0902No
41NDUFA13740019861.1830.0862No
42EDF12890 1222420031.1660.0872No
43EPC12039 8907 203320571.1070.0860No
44DULLARD2081620671.1020.0872No
45TMPO577821421.0240.0848No
46TRIM273264 972021701.0110.0849No
47HNRPM1511 1337022031.0000.0847No
48ACTL6A12136 13068 16662 3457 355422300.9940.0849No
49SNRPA11373 1821622340.9910.0863No
50GTF3C110607 1764622400.9880.0876No
51RANGAP12180 2219522460.9840.0888No
52EXOSC102482 1194322640.9710.0895No
53NOL62385 2405 15913 246622700.9680.0907No
54RSF11818122790.9570.0918No
55RELA2378322800.9560.0933No
56NPM21160222860.9450.0945No
57RPL111245022940.9390.0956No
58ANAPC41684622950.9350.0971No
59PURB533523410.8900.0960No
60RBM143673 1208723840.8600.0951No
61SMAD22351124170.8440.0947No
62LRPPRC13031 2288324270.8370.0955No
63ZNF148594924430.8190.0959No
64NUP5411231 11232 651624560.8100.0966No
65RBM399316 503225170.7670.0945No
66SAP301887125250.7610.0953No
67HIPK21718025300.7560.0963No
68NAP1L41754325640.7290.0956No
69CHMP1A1063425890.7060.0954No
70SFRS2IP7794 1300925900.7060.0965No
71HNRPK9106 9105 3265 486126230.6820.0959No
72NAP1L32426626250.6810.0969No
73MED122427726350.6750.0974No
74HNRPDL11947 3551 695426750.6430.0963No
75BUB1B1490826850.6350.0968No
76GIT211174 646227070.6200.0967No
77RPS7976027170.6140.0971No
78HTATIP21823227620.5810.0956No
79DDX112316927980.5560.0946No
80PDCD71940228300.5380.0937No
81CHEK119181 308528380.5350.0942No
82PHF1211192 648328770.5140.0929No
83DDX4717261 12577 113328810.5130.0936No
84API58613 4400 861228850.5110.0942No
85SRP682014329250.4910.0928No
86APTX2455 729129610.4690.0917No
87RB12175430540.4300.0873No
88SMC38811 23815 8812 457130780.4210.0867No
89HDAC3484431860.3670.0814No
90SHFM11722032070.3590.0809No
91TERT2160433010.3210.0762No
92ING21887733230.3130.0756No
93TOP15790 5789 1021034260.2790.0704No
94TAF13828835040.2590.0666No
95ABL12693 4301 279438470.1810.0481No
96NAP1L119882 3427 330 9485 519338480.1810.0484No
97ARID4A2080 621539320.1640.0441No
98CCNT122140 1160739660.1590.0425No
99FOXE31580142800.1130.0255No
100PML3015 3074 3020 527043330.1070.0228No
101GTF3C2774943840.1020.0202No
102TEP12184943850.1020.0204No
103PTF1A1511044480.0960.0171No
104NKX2-52306045220.0900.0132No
105NCOA62876 1438245700.0870.0108No
106HOXC102234246010.0850.0093No
107ATXN321001 205146370.0820.0075No
108CDC23698546820.0800.0052No
109HNRPUL16118 17923 1608 10577 134547160.0780.0035No
110WTAP721549220.066-0.0077No
111PTGER315384 180349450.065-0.0088No
112ELP4809452410.055-0.0249No
113NUP1532147454120.049-0.0342No
114PAM522254410.048-0.0356No
115NOL42028 1143256820.042-0.0487No
116SMARCD12241 22360 225058110.038-0.0557No
117NOL318496 915 92158710.037-0.0589No
118FGF184721 135158990.036-0.0603No
119MDM219620 332759910.034-0.0653No
120SENP2799060070.034-0.0660No
121NAP1L22408760210.034-0.0667No
122RPL351236060610.033-0.0688No
123ZBTB161064761510.031-0.0736No
124U2AF25813 5812 581464480.026-0.0899No
125CLOCK8749 16507 453064520.026-0.0900No
126EZH21092 1716364730.025-0.0911No
127SPTBN413471 110467760.020-0.1076No
128NLRP510743 1835868220.019-0.1101No
129POLA12411268320.019-0.1105No
130HMGB21359469610.017-0.1175No
131GRINL1A1906469750.017-0.1182No
132TAF76287 196870280.016-0.1211No
133PITX215424 187871440.014-0.1274No
134GEMIN612492 741572350.013-0.1323No
135CBX522108 448572680.013-0.1340No
136DEDD1405673010.012-0.1358No
137XRCC44238 843275440.009-0.1490No
138RBPJ9709 3594 537076260.008-0.1535No
139MATR32043 508176440.008-0.1544No
140GNAZ7176980.007-0.1573No
141TDG10107 570378790.004-0.1672No
142SREBF1988579860.003-0.1730No
143HIF1A485080510.002-0.1765No
144NPC1518781440.000-0.1816No
145ANAPC11205658250-0.001-0.1874No
146TAF93213 84338410-0.003-0.1961No
147SMARCA582158411-0.003-0.1961No
148UBE2I5819 58208424-0.003-0.1967No
149ZRSR22554 2639 240138500-0.004-0.2009No
150NCR1184098522-0.004-0.2020No
151ELF4241628590-0.005-0.2057No
152EPAS1231448593-0.005-0.2058No
153PURA96708758-0.007-0.2148No
154GLIS28179 135008908-0.009-0.2230No
155RAD501198 204608948-0.010-0.2251No
156EXOSC9156108974-0.010-0.2264No
157NFYA51729211-0.013-0.2394No
158GUCY2F240459240-0.013-0.2409No
159CBX18704 190449429-0.016-0.2512No
160POLR2B168179561-0.017-0.2584No
161HDAC6241979620-0.018-0.2616No
162PHB95589670-0.019-0.2642No
163HNRPF136079743-0.020-0.2681No
164FIGLA173839778-0.020-0.2700No
165ELL253299920-0.022-0.2777No
166POLR3K12447 737210060-0.024-0.2853No
167NOD2638410120-0.025-0.2885No
168TPR927 425510181-0.026-0.2918No
169HDAC921084 213110398-0.029-0.3036No
170FMR12432110441-0.030-0.3058No
171NFYC946010527-0.031-0.3105No
172XPO1417210543-0.031-0.3112No
173FOXC12167610548-0.031-0.3114No
174RTCD11518310600-0.032-0.3142No
175SNRPB2547010695-0.034-0.3193No
176WDR41629 1521 12190 717510697-0.034-0.3193No
177TAF41431910887-0.037-0.3296No
178DMC12220710893-0.037-0.3298No
179NPM1119611078-0.040-0.3399No
180CPSF3703811079-0.040-0.3398No
181SNRPN1715 9844 547111092-0.041-0.3404No
182MPHOSPH101780511155-0.042-0.3437No
183TOPBP11065911174-0.042-0.3447No
184ATRX10350 5922 262811222-0.043-0.3472No
185RAD512897 1490311436-0.047-0.3588No
186DNMT3A2167 2133011537-0.050-0.3642No
187BNIP31758111567-0.050-0.3657No
188HNRPH212085 708211631-0.052-0.3691No
189IFI161374511651-0.052-0.3701No
190NUP5022403 9478 22402 216811701-0.053-0.3727No
191PAX82791 1467111761-0.055-0.3759No
192NUFIP12195511775-0.055-0.3765No
193ERCC21549 18363 381212015-0.061-0.3895No
194DDX56698412051-0.062-0.3913No
195NEK113099 1901612174-0.066-0.3979No
196NBN2485 16268 240812184-0.066-0.3983No
197PSEN15297 2125 963012236-0.068-0.4010No
198GTF2H14069 1823612248-0.068-0.4015No
199DNAJB9656512262-0.069-0.4021No
200SCRN17649 1284012273-0.069-0.4026No
201NF21222 516612334-0.070-0.4058No
202TTN14552 2743 1455312382-0.072-0.4082No
203GCM11937212443-0.074-0.4114No
204TIMELESS1017712481-0.075-0.4133No
205SAP18540612965-0.094-0.4397No
206OGG11733112972-0.094-0.4399No
207XRN22936 6302 290513107-0.100-0.4471No
208EMD2557 2430013143-0.102-0.4489No
209IPO7613013229-0.106-0.4534No
210GEMIN71794413533-0.124-0.4698No
211NUP1333849 1871413675-0.136-0.4774No
212SMC1A2572 24225 6279 1078013683-0.136-0.4775No
213RTN47569 1328 1343 144213685-0.136-0.4774No
214THRAP3606213795-0.145-0.4831No
215CENPF1372313878-0.153-0.4874No
216NPAS2518614006-0.166-0.4941No
217BRE3640 4226 1687914025-0.168-0.4949No
218EXOSC31589014213-0.187-0.5048No
219LRCH410544 609014274-0.194-0.5078No
220SP100548214287-0.196-0.5082No
221PRM2962114365-0.206-0.5121No
222TERF2IP12184 18463 716714369-0.206-0.5119No
223ZNF638947614406-0.211-0.5136No
224SMARCD31244614444-0.216-0.5153No
225PHF21A1494314453-0.218-0.5154No
226SMARCB11972814516-0.227-0.5184No
227DYRK1A464914547-0.232-0.5197No
228BCL28651 3928 13864 4435 981 4062 13863 402714565-0.235-0.5202No
229TFIP111674614582-0.238-0.5208No
230HTATIP369014601-0.241-0.5214No
231PTGES37101 1210214647-0.248-0.5234No
232RBBP55620 561914653-0.249-0.5233No
233LMNB123549 194314686-0.254-0.5247No
234CDK86455 6456 3585 354214763-0.266-0.5284No
235POLQ13407 2276814850-0.283-0.5327No
236HSPD14078 912914989-0.314-0.5398No
237HDAC82409015017-0.322-0.5408No
238DEDD2742915123-0.354-0.5460No
239OIP52919 1446815153-0.364-0.5470No
240COPS2455115155-0.364-0.5465No
241TAF523833 5934 375915310-0.414-0.5543No
242TAF6L592315321-0.418-0.5542No
243SMC2472415357-0.427-0.5554No
244GTF3C514638 268515393-0.437-0.5567No
245STAG31665215492-0.478-0.5613No
246SNRPB9842 5469 273615571-0.515-0.5648No
247SNW1728215575-0.516-0.5641No
248MORF4L21211815611-0.530-0.5652No
249BRCA12021315637-0.546-0.5657No
250ILF21258215668-0.558-0.5665No
251RPL31133015672-0.561-0.5658No
252POLR3C1523515694-0.573-0.5660No
253HDAC22005515743-0.602-0.5677No
254HMGA12332315756-0.608-0.5674No
255NUP981772615764-0.613-0.5668No
256ACTB8534 337 337 33815789-0.622-0.5671No
257KIN1512015797-0.626-0.5665No
258RPA12034915833-0.646-0.5674No
259TOP2B579115861-0.663-0.5679No
260POLH2296615875-0.676-0.5675No
261RPP402149115878-0.678-0.5666No
262SF3B22397415888-0.682-0.5660No
263GNL321894 335615933-0.716-0.5673No
264POLR2A539416021-0.780-0.5708No
265PRPF31759416026-0.782-0.5698No
266SFRS29807 2013616049-0.798-0.5697No
267DHX82064916062-0.808-0.5691No
268TP532082216099-0.845-0.5698No
269KLHL71690716154-0.886-0.5713No
270ERCC46927 1192116171-0.901-0.5708No
271KPNA32179716242-0.961-0.5731Yes
272PRPF820780 137116257-0.972-0.5723Yes
273SMUG12210916270-0.979-0.5715Yes
274KPNA12277616276-0.985-0.5702Yes
275NXT11481416288-0.993-0.5692Yes
276INTS65184 12616328-1.004-0.5698Yes
277MSH3511916330-1.005-0.5682Yes
278BRCC39979 557816393-1.037-0.5700Yes
279NR6A11459616446-1.089-0.5711Yes
280ERCC514255 409716472-1.117-0.5707Yes
281SF3B42226916492-1.131-0.5700Yes
282MPHOSPH12387816518-1.162-0.5695Yes
283CDC26729416520-1.163-0.5678Yes
284CHAF1A2318816523-1.168-0.5660Yes
285EMG11016 1700516554-1.203-0.5658Yes
286ERCC11235 1045 164616562-1.213-0.5642Yes
287SNRPA7007 11992 700816563-1.214-0.5623Yes
288CDK91461916575-1.224-0.5610Yes
289TXNL4A6567 1132916582-1.228-0.5594Yes
290TOPORS1592016586-1.232-0.5576Yes
291DHX15884216588-1.232-0.5557Yes
292NUDT211266516589-1.233-0.5537Yes
293IVNS1ABP4384 405016604-1.245-0.5525Yes
294MSH623137 512016625-1.271-0.5516Yes
295SMARCE11218 2025316637-1.287-0.5502Yes
296MSH22313816638-1.288-0.5482Yes
297PTBP1530316652-1.298-0.5468Yes
298SNRPG1262216664-1.317-0.5453Yes
299NUTF212632 752916744-1.423-0.5474Yes
300SLC29A22377516781-1.468-0.5471Yes
301TAF616322 89116824-1.518-0.5470Yes
302ERCC32360516832-1.531-0.5450Yes
303ASCC3L11486716848-1.547-0.5433Yes
304TAF111273316854-1.553-0.5412Yes
305NRM2325016864-1.564-0.5392Yes
306PRICKLE1837916882-1.584-0.5376Yes
307ASH2L621216898-1.602-0.5359Yes
308MED42196216909-1.613-0.5339Yes
309NARG17934 91716919-1.628-0.5318Yes
310BNIP2179 1938816925-1.632-0.5295Yes
311MCRS16961 6960 696216941-1.640-0.5278Yes
312CCNH732216942-1.644-0.5252Yes
313NUP62949716948-1.656-0.5228Yes
314UBTF1313 1005216954-1.660-0.5205Yes
315BARD11393216957-1.665-0.5179Yes
316SURF6994516970-1.677-0.5159Yes
317TCOF1566016995-1.697-0.5146Yes
318SF3A31609117000-1.699-0.5121Yes
319TBP671 155417049-1.751-0.5120Yes
320KLHDC32295617058-1.761-0.5096Yes
321ELP32178217066-1.770-0.5072Yes
322GTF3C414635 652117079-1.786-0.5051Yes
323POLR2E3325 1969917108-1.814-0.5037Yes
324KPNA2924517119-1.840-0.5014Yes
325XPO712272 723917162-1.895-0.5007Yes
326MCM79372 356817165-1.899-0.4978Yes
327TAF101078517191-1.953-0.4961Yes
328NCL5153 1389917193-1.954-0.4930Yes
329RPL361202417194-1.957-0.4899Yes
330RANBP22001917218-1.991-0.4881Yes
331YEATS41962117246-2.036-0.4863Yes
332MED62102817262-2.057-0.4839Yes
333GTF3C341817298-2.102-0.4825Yes
334SNAPC41042417301-2.106-0.4793Yes
335CHAF1B2269417323-2.136-0.4771Yes
336SF3A21993817326-2.138-0.4738Yes
337MRE11A3014 1956017360-2.192-0.4721Yes
338DDX54777817369-2.212-0.4691Yes
339SF3A1745017384-2.247-0.4663Yes
340SNRPF764517393-2.259-0.4632Yes
341HES613882 405817421-2.302-0.4610Yes
342TIPIN3013 725817426-2.311-0.4576Yes
343COIL2070817429-2.319-0.4540Yes
344GEMIN46592 659117440-2.337-0.4509Yes
345FOXF22167717449-2.352-0.4476Yes
346PPIH1228717459-2.368-0.4443Yes
347CHEK216751 358717471-2.381-0.4412Yes
348RPS19539817473-2.393-0.4374Yes
349POLR3H13460 813517517-2.467-0.4359Yes
350POP71632917535-2.487-0.4329Yes
351MPG2092917545-2.506-0.4294Yes
352ASNA11881017565-2.554-0.4264Yes
353RPA22330 1605717569-2.561-0.4226Yes
354GTF2F11359917601-2.652-0.4201Yes
355EED1775917611-2.674-0.4163Yes
356NUP8820365 131617618-2.695-0.4124Yes
357SIP12126317619-2.696-0.4081Yes
358FUSIP14715 1603617627-2.708-0.4042Yes
359SUV39H12419417637-2.723-0.4004Yes
360SNUPN1228217654-2.754-0.3970Yes
361KRR16989 331317656-2.756-0.3927Yes
362SUMO15826 3943 1024717665-2.792-0.3887Yes
363RPP302387717670-2.802-0.3845Yes
364POLI2341017682-2.820-0.3806Yes
365MCM31399117710-2.887-0.3775Yes
366ANAPC512221 359717711-2.888-0.3730Yes
367POLR2J1667217714-2.890-0.3685Yes
368DDX19B888817717-2.897-0.3640Yes
369SNRPD31251417723-2.911-0.3597Yes
370TIMM501791117731-2.923-0.3555Yes
371PHF5A2219417755-2.970-0.3520Yes
372CPSF12224117788-3.055-0.3490Yes
373RPA31266717797-3.079-0.3445Yes
374GEMIN52043917808-3.106-0.3402Yes
375POP12214 748217854-3.197-0.3376Yes
376DDX242084 2099517870-3.254-0.3333Yes
377SNRPD2841217892-3.333-0.3292Yes
378SNRPD12362217897-3.342-0.3241Yes
379CIB11778017924-3.424-0.3201Yes
380TUBG12066217925-3.427-0.3147Yes
381SF3B31874617955-3.510-0.3107Yes
382NOLC1770417970-3.562-0.3059Yes
383BCAS21266217977-3.573-0.3005Yes
384PPARGC1B931817982-3.595-0.2951Yes
385NUP1601495718027-3.726-0.2916Yes
386SMARCC19834 545918058-3.805-0.2872Yes
387SNRP70118618077-3.843-0.2822Yes
388U2AF1843118097-3.895-0.2770Yes
389RUVBL17131 713018114-3.963-0.2717Yes
390AAAS22111 227418134-4.076-0.2663Yes
391RAE11239518159-4.157-0.2610Yes
392RCC11573518165-4.168-0.2547Yes
393ERCC812982 3255 318718168-4.177-0.2482Yes
394WDHD12185918185-4.244-0.2424Yes
395EFTUD21219 2020318188-4.255-0.2357Yes
396NUP107833718212-4.349-0.2301Yes
397GTF2H42299918232-4.438-0.2241Yes
398NSUN22161018235-4.448-0.2172Yes
399RANBP52193018236-4.454-0.2102Yes
400HDAC102216518251-4.503-0.2038Yes
401CDKN2A2491 1584118258-4.529-0.1970Yes
402BNIP12332518266-4.585-0.1901Yes
403RPP381469818269-4.594-0.1830Yes
404LMO41515118276-4.622-0.1760Yes
405LSM41858318282-4.650-0.1689Yes
406LYAR1685618298-4.718-0.1623Yes
407DDX211975118319-4.864-0.1557Yes
408NOLA31491418332-4.963-0.1485Yes
409IKBKAP2540 604518355-5.096-0.1417Yes
410RUVBL2976618377-5.196-0.1346Yes
411KPNB12027418392-5.297-0.1270Yes
412EIF5A11345 20379 659018471-5.997-0.1218Yes
413NOL5A1247418495-6.196-0.1133Yes
414SDAD11647918522-6.466-0.1045Yes
415MKI67IP750918528-6.554-0.0944Yes
416EXOSC11237918542-6.761-0.0844Yes
417CIRH1A1847818552-6.956-0.0739Yes
418PCGF62365018571-7.523-0.0630Yes
419MYBBP1A5217 1232 521618575-7.601-0.0511Yes
420POLR1E722618581-7.664-0.0393Yes
421RRP91932818590-8.020-0.0270Yes
422NOLA21197218591-8.102-0.0142Yes
423NOL18472 1728018608-9.8380.0004Yes
Table: GSEA details [plain text format]



Fig 2: NUCLEAR_PART   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NUCLEAR_PART: Random ES distribution   
Gene set null distribution of ES for NUCLEAR_PART