Details for gene set V$GFI1

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$GFI1_01
Enrichment Score (ES)	0.60308903
Normalized Enrichment Score (NES)	1.5820819
Nominal p-value	0.0018315018
FDR q-value	0.048623588
FWER p-Value	0.369

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HOXA7	4862	33	9.031	0.0440	Yes
2	PREP	20035	101	7.625	0.0789	Yes
3	IL16	9171	129	7.290	0.1144	Yes
4	MEIS1	20524	179	6.639	0.1454	Yes
5	GADD45A	17129	196	6.435	0.1771	Yes
6	SLC4A7	10181	214	6.243	0.2078	Yes
7	SOX4	5479	232	6.101	0.2378	Yes
8	MAP3K3	20626	266	5.885	0.2658	Yes
9	BCL9L	19475	267	5.879	0.2956	Yes
10	RAB6B	11289	321	5.467	0.3204	Yes
11	TCTA	4167	417	4.827	0.3397	Yes
12	GABARAP	20815	431	4.781	0.3632	Yes
13	BCL6	22624	523	4.312	0.3801	Yes
14	SERTAD4	13715	529	4.268	0.4015	Yes
15	TCF4	5642	562	4.128	0.4207	Yes
16	HSD11B1	9125 4019	631	3.850	0.4365	Yes
17	PTEN	5305	661	3.694	0.4536	Yes
18	ABCF2	11338 6580 6579	743	3.425	0.4666	Yes
19	MAP4K3	22887	754	3.376	0.4831	Yes
20	SREBF2	5509	761	3.330	0.4997	Yes
21	CAMK2D	4232	775	3.295	0.5157	Yes
22	PPARGC1A	16533	835	3.159	0.5285	Yes
23	TRAF4	10217 5796 1400	889	3.037	0.5410	Yes
24	EXOC7	7003	912	2.980	0.5549	Yes
25	PEA15	13753	982	2.790	0.5653	Yes
26	IRF2BP1	18368	983	2.788	0.5794	Yes
27	BMP4	21863	1004	2.727	0.5921	Yes
28	MAP4K2	6457	1131	2.455	0.5977	Yes
29	TCF12	10044 3125	1547	1.753	0.5841	Yes
30	BCL9	15232	1579	1.709	0.5911	Yes
31	BRD2	4735 8984 7628	1610	1.675	0.5979	Yes
32	MEF2C	3204 9378	1666	1.612	0.6031	Yes
33	MAP2K5	19088	2016	1.152	0.5900	No
34	CACNB2	4466 8678	2250	0.982	0.5823	No
35	HNRPA0	13382	2262	0.973	0.5866	No
36	CRYZL1	1644 12385	2473	0.794	0.5793	No
37	WDR23	22009	2485	0.788	0.5827	No
38	MYO1C	20777	2655	0.661	0.5768	No
39	HIVEP3	4973	2968	0.468	0.5623	No
40	CSAD	10899	2974	0.466	0.5644	No
41	NFIA	16172 5170	3020	0.446	0.5642	No
42	HOXA9	17147 9109 1024	3024	0.446	0.5663	No
43	TOP1	5790 5789 10210	3426	0.279	0.5459	No
44	MBNL1	1921 15582	3427	0.279	0.5473	No
45	LAMA3	23620 2009	3483	0.265	0.5457	No
46	SOX5	9850 1044 5480 16937	3645	0.223	0.5381	No
47	CTLA4	14238	3650	0.222	0.5390	No
48	MYH10	8077	3781	0.195	0.5329	No
49	PBX1	5224	3783	0.195	0.5339	No
50	HOXB6	20688	3910	0.168	0.5279	No
51	ANGPT1	8588 2260 22303	4099	0.137	0.5184	No
52	ARHGEF2	4987	4115	0.134	0.5182	No
53	ELAVL4	15805 4889 9137	4250	0.116	0.5115	No
54	ZIC4	5992	4269	0.113	0.5111	No
55	DSCR1L1	23231	4293	0.111	0.5105	No
56	HIST1H1E	21520	4319	0.109	0.5097	No
57	SOX15	9848	4327	0.108	0.5098	No
58	ZIC3	10430	4357	0.105	0.5088	No
59	RORA	3019 5388	4366	0.104	0.5089	No
60	HIST1H1T	13653	4461	0.095	0.5043	No
61	TCF1	16416	4495	0.093	0.5029	No
62	NGEF	13891	4871	0.069	0.4829	No
63	JMJD1C	11531 19996	4975	0.064	0.4777	No
64	DDR2	13767	5118	0.059	0.4703	No
65	DCX	24040 8841 4604	5211	0.056	0.4655	No
66	DSPP	8867	5331	0.052	0.4594	No
67	ASB4	990 17529	5490	0.047	0.4510	No
68	ICAM5	19543	5538	0.046	0.4487	No
69	CREB5	10551	5982	0.035	0.4248	No
70	TFEC	17213	6482	0.025	0.3979	No
71	NKX2-8	9465	6589	0.023	0.3922	No
72	HOXA6	17150	6634	0.022	0.3900	No
73	NCAM1	5149	6688	0.022	0.3872	No
74	GREM1	14485	6772	0.020	0.3828	No
75	NEXN	12737 1903	6804	0.020	0.3812	No
76	PDE4D	10722 6235	6845	0.019	0.3791	No
77	GAS2	4753	6870	0.019	0.3779	No
78	BAI3	5580	6890	0.018	0.3770	No
79	HOXA3	9108 1075	6953	0.017	0.3737	No
80	PHYHIP	21968	6963	0.017	0.3733	No
81	HOXB8	9111	7203	0.014	0.3604	No
82	PROCR	14772	7240	0.013	0.3585	No
83	PHF8	6770	7253	0.013	0.3579	No
84	HOXD10	14983	7287	0.013	0.3562	No
85	GPR20	22270	7475	0.010	0.3461	No
86	LUZP1	6533 11257 2503	7571	0.009	0.3410	No
87	CHRM1	23943	7972	0.003	0.3193	No
88	CNKSR1	15719 20331	7982	0.003	0.3188	No
89	TRDN	20062	8068	0.001	0.3142	No
90	TMPRSS2	22527	8357	-0.003	0.2986	No
91	MRGPRF	17995	8366	-0.003	0.2982	No
92	SGK2	14750	8494	-0.004	0.2913	No
93	PURA	9670	8758	-0.007	0.2771	No
94	CACNG3	12029	8907	-0.009	0.2691	No
95	CDON	12195	8919	-0.009	0.2685	No
96	MSR1	5417	8921	-0.009	0.2685	No
97	NRXN3	2153 5196	9054	-0.011	0.2614	No
98	IRX3	18793	9252	-0.013	0.2508	No
99	CLMN	20988 2119 2104	9265	-0.014	0.2502	No
100	GRPR	24015	9432	-0.016	0.2413	No
101	MAP2K7	6453	9569	-0.017	0.2340	No
102	SLC26A3	21298	9588	-0.018	0.2331	No
103	EBF2	21975	9604	-0.018	0.2324	No
104	EVA1	19472	9732	-0.020	0.2256	No
105	JPH4	21826	9888	-0.022	0.2173	No
106	ICAM4	19544	10318	-0.028	0.1941	No
107	HOXA10	17145 989	10322	-0.028	0.1941	No
108	DEPDC2	14295	10421	-0.029	0.1889	No
109	ZIC1	19040	10540	-0.031	0.1827	No
110	CPEB3	5539	10625	-0.033	0.1783	No
111	TRIM23	8165 3230	10751	-0.034	0.1717	No
112	BPGM	17489	10825	-0.036	0.1679	No
113	BDNF	14926 2797	10908	-0.037	0.1637	No
114	GFRA3	23469	11171	-0.042	0.1496	No
115	DPF3	7659 12853	11187	-0.042	0.1491	No
116	RKHD3	18199	11443	-0.048	0.1355	No
117	OTP	21582	11483	-0.048	0.1336	No
118	ITSN1	9196	11918	-0.059	0.1103	No
119	CGN	12896 12897 7701	11955	-0.060	0.1087	No
120	ITGA10	15493	12014	-0.061	0.1058	No
121	PPP2R2A	3222 21774	12043	-0.062	0.1046	No
122	CDH6	22320	12386	-0.072	0.0864	No
123	GPRC5D	16962	12482	-0.075	0.0817	No
124	CDH13	4506 3826	12518	-0.077	0.0801	No
125	PCDH8	21739 3017	12672	-0.082	0.0723	No
126	BNC2	15850	12687	-0.083	0.0719	No
127	DSG3	8866	12745	-0.085	0.0693	No
128	EDN1	21658	12885	-0.090	0.0622	No
129	TPBG	5793	13056	-0.098	0.0534	No
130	ETS1	10715 6230 3135	13060	-0.098	0.0538	No
131	POU3F1	16093	13085	-0.099	0.0530	No
132	RPS6KB1	7815 1207 13040	13099	-0.100	0.0528	No
133	KLF12	4960 2637 21732 9228	13177	-0.104	0.0491	No
134	RARB	3011 21915	13214	-0.106	0.0477	No
135	HOXD11	9112	13237	-0.107	0.0470	No
136	CALN1	4713	13263	-0.108	0.0462	No
137	C1QTNF7	16852	13292	-0.109	0.0453	No
138	CNTN6	17346	13339	-0.111	0.0433	No
139	KLF15	17359	13505	-0.123	0.0350	No
140	PI15	13586	13588	-0.128	0.0312	No
141	ZFPM2	22483	13621	-0.131	0.0301	No
142	PTHLH	16931	13801	-0.145	0.0211	No
143	PLCD4	9587	13804	-0.146	0.0218	No
144	PRIMA1	2055 20997	13819	-0.148	0.0218	No
145	PANK1	1687 23692	13858	-0.151	0.0205	No
146	ELMO3	10629 18495	13916	-0.156	0.0182	No
147	RHOA	8624 4409 4410	13936	-0.158	0.0179	No
148	DNAJB4	12451 1916 1832	13966	-0.161	0.0172	No
149	PHACTR3	7900 2770	13986	-0.164	0.0170	No
150	TLR1	10190	14015	-0.168	0.0163	No
151	NR2F2	8619 409	14034	-0.169	0.0162	No
152	TSGA10	4123 13975 5587	14068	-0.171	0.0153	No
153	AVP	14428	14134	-0.177	0.0126	No
154	SOX9	20611	14230	-0.189	0.0084	No
155	HOXB3	20685	14272	-0.194	0.0072	No
156	PDC	4046 14102	14355	-0.204	0.0038	No
157	FOXP2	4312 17523 8523	14407	-0.211	0.0021	No
158	SP8	21122	14486	-0.223	-0.0010	No
159	CDX2	16289	14568	-0.236	-0.0042	No
160	GPR17	399	14599	-0.240	-0.0046	No
161	ATF2	4418 2759	14872	-0.288	-0.0179	No
162	MTMR4	20712	14944	-0.304	-0.0203	No
163	CREM	2005 1965 23496 1951	14953	-0.306	-0.0191	No
164	SLC25A18	17303	15167	-0.367	-0.0288	No
165	AGPAT4	23384	15209	-0.379	-0.0292	No
166	HOXC8	4865	15332	-0.421	-0.0336	No
167	STMN1	9261	15365	-0.429	-0.0332	No
168	TBR1	83	15493	-0.480	-0.0377	No
169	HOXC4	4864	15523	-0.493	-0.0367	No
170	SOSTDC1	21286	15536	-0.502	-0.0349	No
171	TFB1M	23393	15617	-0.533	-0.0365	No
172	HMGA1	23323	15756	-0.608	-0.0409	No
173	SPAG7	20367	15831	-0.646	-0.0416	No
174	POLH	22966	15875	-0.676	-0.0406	No
175	BTG1	4458 4457 8663	15877	-0.677	-0.0372	No
176	ATP5G2	12610	16008	-0.771	-0.0403	No
177	SFRS2	9807 20136	16049	-0.798	-0.0385	No
178	TLK1	14563	16293	-0.995	-0.0466	No
179	HBP1	2048 2162 21086	16304	-0.998	-0.0421	No
180	BRUNOL4	2010 4229	16428	-1.064	-0.0434	No
181	GRK6	6449	16456	-1.100	-0.0393	No
182	MCTS1	24351	16593	-1.236	-0.0404	No
183	YWHAE	20776	16614	-1.256	-0.0351	No
184	USP5	17004	16710	-1.372	-0.0333	No
185	RKHD1	10693	16831	-1.530	-0.0321	No
186	PRKAG1	22135	17363	-2.193	-0.0498	No
187	ADD3	23812 3694	17439	-2.337	-0.0420	No
188	SH3BGRL2	5601	17971	-3.563	-0.0528	No
189	CCR7	20254	17975	-3.570	-0.0349	No
190	PPARGC1B	9318	17982	-3.595	-0.0170	No
191	XPO5	7802	18082	-3.855	-0.0028	No
192	PDLIM1	7023	18504	-6.269	0.0061	No