Details for gene set V$FREAC4

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC4_01
Enrichment Score (ES)	0.6458926
Normalized Enrichment Score (NES)	1.5735694
Nominal p-value	0.0035587188
FDR q-value	0.052137747
FWER p-Value	0.42

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	2	10.883	0.1261	Yes
2	GFRA1	9015	7	10.510	0.2477	Yes
3	LEF1	1860 15420	37	8.921	0.3495	Yes
4	ETHE1	18347	152	6.965	0.4241	Yes
5	DUSP1	23061	191	6.471	0.4971	Yes
6	MBNL2	21932	197	6.415	0.5711	Yes
7	PLS3	8332	786	3.274	0.5774	Yes
8	CDKN1A	4511 8729	940	2.886	0.6026	Yes
9	CTCF	18490	1184	2.353	0.6167	Yes
10	KBTBD2	17137	1379	1.991	0.6293	Yes
11	ZFX	5984	1471	1.853	0.6459	Yes
12	ZADH2	23501	1988	1.181	0.6317	No
13	TCF7L2	10048 5646	2198	1.001	0.6320	No
14	UBE2H	5823 5822	2215	0.998	0.6427	No
15	ULK1	16436	2825	0.543	0.6162	No
16	TRPS1	8195	2906	0.499	0.6176	No
17	HEPH	24288 2623 2635 2568 2652	3173	0.373	0.6076	No
18	TLE3	5767 19416	3283	0.327	0.6055	No
19	NCDN	15756 2487 6471	3588	0.236	0.5918	No
20	EYA1	4695 4061	3923	0.165	0.5757	No
21	OTOP3	20599	4144	0.131	0.5654	No
22	PELI2	8217	4146	0.131	0.5668	No
23	FOXB1	12254 19069	4401	0.101	0.5543	No
24	TCF1	16416	4495	0.093	0.5503	No
25	MSC	13998	4602	0.085	0.5456	No
26	CAMK1D	5977 2948	4665	0.081	0.5432	No
27	CALD1	4273 8463	4983	0.064	0.5268	No
28	OTX1	20517	4997	0.063	0.5268	No
29	HOXA11	17146	5337	0.052	0.5091	No
30	FGF9	8966	5494	0.047	0.5013	No
31	FOXD3	9088	5838	0.038	0.4832	No
32	VIT	23155	5856	0.037	0.4827	No
33	ROR1	6472	5860	0.037	0.4830	No
34	SYT10	22157	5990	0.034	0.4764	No
35	SHOX2	1802 5432	6154	0.031	0.4680	No
36	LOX	23438	6454	0.025	0.4521	No
37	PHEX	24024	6679	0.022	0.4403	No
38	PNRC1	15925	6820	0.019	0.4329	No
39	GABRR1	16250	6841	0.019	0.4321	No
40	PITX2	15424 1878	7144	0.014	0.4159	No
41	TLX1	23839	7238	0.013	0.4111	No
42	HOXD9	14982	7821	0.005	0.3797	No
43	SLC24A2	8020 13326 8021	8019	0.002	0.3691	No
44	NNAT	2764 5180	8129	0.001	0.3632	No
45	ODZ1	24168	8484	-0.004	0.3441	No
46	NR4A1	9099	8659	-0.006	0.3348	No
47	PURA	9670	8758	-0.007	0.3296	No
48	PER2	3940 13881	8769	-0.008	0.3292	No
49	MYH2	20838	8935	-0.010	0.3204	No
50	SPRY4	23448	9074	-0.011	0.3131	No
51	NEDD4	19384 3101	9122	-0.012	0.3107	No
52	IBSP	16775	9764	-0.020	0.2763	No
53	UBXD3	15701	9781	-0.020	0.2756	No
54	SEMA5B	9801 22777	10086	-0.024	0.2595	No
55	HOXC6	22339 2302	10194	-0.026	0.2540	No
56	CD109	6174 10656 19369	10224	-0.026	0.2528	No
57	PRDM1	19775 3337	10273	-0.027	0.2505	No
58	OSR2	22492	10392	-0.029	0.2445	No
59	PLUNC	9593	10581	-0.032	0.2347	No
60	EVX1	17442	10988	-0.039	0.2132	No
61	SLC34A3	14664	11056	-0.040	0.2101	No
62	IER5	13802	11351	-0.046	0.1947	No
63	CITED2	5118 14477	12078	-0.063	0.1563	No
64	PTHR1	5318 18985	12124	-0.064	0.1546	No
65	RARG	22113	12231	-0.068	0.1496	No
66	CLDN18	19028	12254	-0.068	0.1492	No
67	ADRB1	4357	12474	-0.075	0.1383	No
68	COLEC12	23624 8946	12550	-0.078	0.1351	No
69	BTBD3	10457 2975 6007 6006	12842	-0.088	0.1205	No
70	PDCD1LG2	23892	12995	-0.095	0.1133	No
71	HR	3622 9119	13078	-0.099	0.1101	No
72	KLF12	4960 2637 21732 9228	13177	-0.104	0.1060	No
73	TNMD	24260	13280	-0.109	0.1017	No
74	ERG	1686 8915	13304	-0.110	0.1018	No
75	POU3F3	14261	13360	-0.113	0.1001	No
76	TGFB3	10161	13539	-0.125	0.0919	No
77	TECTA	19159	13908	-0.155	0.0739	No
78	AP1G2	2677 21827	14095	-0.173	0.0658	No
79	ALDH1A2	19386	14199	-0.185	0.0624	No
80	FOXP2	4312 17523 8523	14407	-0.211	0.0537	No
81	IGF1	3352 9156 3409	14748	-0.264	0.0384	No
82	TBX4	5633	14876	-0.290	0.0349	No
83	FERD3L	21292	14955	-0.306	0.0342	No
84	MCC	552	15236	-0.389	0.0236	No
85	SLC31A1	2447 16195	15322	-0.419	0.0239	No
86	HOXC4	4864	15523	-0.493	0.0188	No
87	SIN3A	5442	15952	-0.728	0.0041	No
88	HSPG2	4884 16023	15955	-0.730	0.0125	No
89	PUM2	2071 8161	15960	-0.735	0.0208	No
90	PHTF2	16599	16432	-1.066	0.0077	No
91	TMOD3	6945	16521	-1.164	0.0164	No
92	TAF5L	18712	17123	-1.844	0.0054	No
93	PDE7A	9544 1788	17134	-1.859	0.0264	No
94	LMO4	15151	18276	-4.622	0.0184	No