Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC2_01
Enrichment Score (ES)	0.64514923
Normalized Enrichment Score (NES)	1.6922677
Nominal p-value	0.0
FDR q-value	0.01808117
FWER p-Value	0.035

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	2	10.883	0.0581	Yes
2	MARCKS	9331	19	9.740	0.1093	Yes
3	NDRG1	22276	112	7.468	0.1443	Yes
4	DUSP1	23061	191	6.471	0.1747	Yes
5	MBNL2	21932	197	6.415	0.2087	Yes
6	SQSTM1	9517	213	6.243	0.2413	Yes
7	SEPP1	22524	231	6.115	0.2730	Yes
8	KLF3	4961	341	5.329	0.2956	Yes
9	ABTB1	17075	361	5.150	0.3221	Yes
10	BCL11A	4691	412	4.861	0.3454	Yes
11	HOXB4	20686	426	4.798	0.3704	Yes
12	SMAD5	21621	447	4.668	0.3943	Yes
13	RAB6IP1	17676	464	4.581	0.4179	Yes
14	NFIX	9458	492	4.460	0.4403	Yes
15	PRKCH	21246	544	4.206	0.4600	Yes
16	TIAM1	22547	618	3.884	0.4768	Yes
17	EXT1	22297	634	3.820	0.4964	Yes
18	UTX	10266 2574	695	3.598	0.5124	Yes
19	CDKN1C	17546	779	3.287	0.5255	Yes
20	TBCC	23215	825	3.180	0.5401	Yes
21	CDKN1A	4511 8729	940	2.886	0.5493	Yes
22	PPM1D	20721	946	2.877	0.5644	Yes
23	BCAS3	5314	961	2.839	0.5789	Yes
24	HIBADH	17144	1277	2.169	0.5734	Yes
25	CHD2	10847	1372	2.003	0.5790	Yes
26	KBTBD2	17137	1379	1.991	0.5893	Yes
27	AXL	17922	1440	1.911	0.5963	Yes
28	PPAP2B	7503 16161	1458	1.875	0.6054	Yes
29	UHRF2	3731 4262 8452 23887	1498	1.818	0.6130	Yes
30	STK3	7084	1530	1.776	0.6208	Yes
31	BCL9	15232	1579	1.709	0.6273	Yes
32	BRIP1	20311	1581	1.708	0.6364	Yes
33	ETV5	22630	1589	1.702	0.6451	Yes
34	RBM4	9706 3693	1871	1.326	0.6370	No
35	ZADH2	23501	1988	1.181	0.6370	No
36	EGLN1	8504 18707 4298	2089	1.084	0.6374	No
37	DNAJB12	7146	2103	1.069	0.6424	No
38	UBE2H	5823 5822	2215	0.998	0.6417	No
39	NAP1L3	24266	2625	0.681	0.6232	No
40	TCF15	14798	2674	0.644	0.6240	No
41	SH3GL3	18201	2699	0.625	0.6261	No
42	PAK1	9527	2776	0.568	0.6250	No
43	IL6ST	4920	2847	0.527	0.6240	No
44	THRA	1447 10171 1406	2857	0.523	0.6263	No
45	RPS18	1529 5397 1603	3074	0.422	0.6169	No
46	PITPNC1	7759	3155	0.380	0.6146	No
47	MAP4K5	11853 21048 2101 2142	3235	0.346	0.6121	No
48	HIPK1	4851	3275	0.332	0.6118	No
49	MBNL1	1921 15582	3427	0.279	0.6051	No
50	DHRS3	15997	3563	0.241	0.5991	No
51	VPS52	23287 1622	3570	0.240	0.6000	No
52	PHF15	20467 8050	3878	0.174	0.5843	No
53	MRVI1	17674 1020 2526	3886	0.172	0.5848	No
54	DUSP4	18632 3820	3906	0.168	0.5847	No
55	EYA1	4695 4061	3923	0.165	0.5847	No
56	ARID4A	2080 6215	3932	0.164	0.5852	No
57	HEBP2	19812	4029	0.148	0.5808	No
58	PELI2	8217	4146	0.131	0.5752	No
59	CHCHD7	16280	4187	0.125	0.5737	No
60	MMP13	19573 3007	4224	0.119	0.5723	No
61	RASD1	20424	4266	0.114	0.5707	No
62	CPNE1	11186	4320	0.109	0.5684	No
63	RORA	3019 5388	4366	0.104	0.5666	No
64	FOXB1	12254 19069	4401	0.101	0.5652	No
65	TCF1	16416	4495	0.093	0.5607	No
66	NRAP	23642	4786	0.073	0.5454	No
67	IRS4	9183 4926	4827	0.071	0.5436	No
68	NGEF	13891	4871	0.069	0.5416	No
69	CALD1	4273 8463	4983	0.064	0.5359	No
70	HOXA11	17146	5337	0.052	0.5171	No
71	MITF	17349	5351	0.051	0.5166	No
72	FGF9	8966	5494	0.047	0.5092	No
73	TRPC4	15593	5527	0.046	0.5077	No
74	VIT	23155	5856	0.037	0.4901	No
75	ROR1	6472	5860	0.037	0.4901	No
76	BMP5	19376	5930	0.036	0.4866	No
77	PLCB2	5262	6166	0.031	0.4740	No
78	KCTD15	17864	6169	0.031	0.4741	No
79	SLC38A3	13319	6232	0.029	0.4709	No
80	STOML3	15594	6256	0.029	0.4698	No
81	ADAM12	2207 8545	6270	0.029	0.4692	No
82	GREM1	14485	6772	0.020	0.4421	No
83	NFIB	15855	7040	0.016	0.4278	No
84	PITX2	15424 1878	7144	0.014	0.4222	No
85	SYT1	5565	7160	0.014	0.4215	No
86	PIK3C2A	17667	7327	0.012	0.4126	No
87	HHIP	4849	7358	0.012	0.4110	No
88	SCRN3	14984	7551	0.009	0.4006	No
89	BRUNOL6	19421	7620	0.008	0.3970	No
90	GNPNAT1	12027 7031	7687	0.007	0.3935	No
91	HOXD9	14982	7821	0.005	0.3863	No
92	AKT2	4365 4366	7867	0.004	0.3838	No
93	MRGPRF	17995	8366	-0.003	0.3569	No
94	PCF11	121	8489	-0.004	0.3503	No
95	PURA	9670	8758	-0.007	0.3358	No
96	HAND2	18615	8794	-0.008	0.3339	No
97	RBM16	11492 8387	8822	-0.008	0.3325	No
98	ACCN1	20327 1194	9193	-0.013	0.3125	No
99	ENPP2	9548	9928	-0.022	0.2728	No
100	EPHB3	22816	9971	-0.023	0.2706	No
101	EN2	16898	10074	-0.024	0.2652	No
102	CXXC5	12523	10099	-0.025	0.2641	No
103	CLDN8	22549 1747	10154	-0.025	0.2613	No
104	RASGEF1B	11515 16469	10159	-0.025	0.2612	No
105	CD109	6174 10656 19369	10224	-0.026	0.2579	No
106	FGF12	1723 22621	10239	-0.026	0.2572	No
107	EVI1	4689 8926	10262	-0.027	0.2562	No
108	PRDM1	19775 3337	10273	-0.027	0.2558	No
109	BMP2	14833	10347	-0.028	0.2520	No
110	DTNA	8870 4647 23611 1991	10403	-0.029	0.2492	No
111	GPR4	18364	10529	-0.031	0.2425	No
112	PCSK1	21600	10565	-0.032	0.2408	No
113	PLUNC	9593	10581	-0.032	0.2402	No
114	MAFF	22423 2243	10845	-0.036	0.2261	No
115	BDNF	14926 2797	10908	-0.037	0.2229	No
116	RARA	5358	10940	-0.038	0.2215	No
117	DSTN	14823	10951	-0.038	0.2211	No
118	SLC34A3	14664	11056	-0.040	0.2157	No
119	LRP5	23948 9285	11085	-0.041	0.2144	No
120	HOXC12	22343	11140	-0.042	0.2117	No
121	PCDH18	15348	11239	-0.043	0.2066	No
122	SLITRK5	21939	11394	-0.047	0.1985	No
123	EZH1	20217	11473	-0.048	0.1945	No
124	PAPPA	16190	11504	-0.049	0.1932	No
125	SYT6	13437 7042 12040	11590	-0.051	0.1888	No
126	WEE1	18127	11778	-0.055	0.1790	No
127	GPRC5C	12864	11976	-0.060	0.1686	No
128	SLC2A4	20380	12032	-0.062	0.1660	No
129	CITED2	5118 14477	12078	-0.063	0.1639	No
130	OFCC1	21486	12090	-0.063	0.1636	No
131	RAD21	22298	12185	-0.066	0.1589	No
132	NRG1	3885	12283	-0.069	0.1540	No
133	EN1	387 14155	12319	-0.070	0.1524	No
134	DOCK3	9920 5537 10751	12413	-0.073	0.1478	No
135	FOSL2	4733 8978 16878	12429	-0.073	0.1474	No
136	FGF20	18892	12495	-0.076	0.1442	No
137	NNT	3273 5181 9471 3238	12566	-0.078	0.1409	No
138	PLAG1	7148 15949 12161	12586	-0.079	0.1403	No
139	MLLT6	20678	12609	-0.080	0.1395	No
140	CGA	16246	13077	-0.099	0.1147	No
141	HR	3622 9119	13078	-0.099	0.1152	No
142	KLF12	4960 2637 21732 9228	13177	-0.104	0.1105	No
143	CD2AP	22975	13186	-0.104	0.1106	No
144	ERG	1686 8915	13304	-0.110	0.1048	No
145	POU3F3	14261	13360	-0.113	0.1025	No
146	MID1	5097 5098	13495	-0.122	0.0958	No
147	TGFB3	10161	13539	-0.125	0.0942	No
148	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	13606	-0.130	0.0913	No
149	SMAD1	18831 922	13610	-0.131	0.0918	No
150	AP1G2	2677 21827	14095	-0.173	0.0665	No
151	DSG4	9262 23616	14195	-0.184	0.0621	No
152	FOXP2	4312 17523 8523	14407	-0.211	0.0518	No
153	PROX1	9623	14447	-0.217	0.0508	No
154	CDX2	16289	14568	-0.236	0.0456	No
155	IGF1	3352 9156 3409	14748	-0.264	0.0373	No
156	NFRKB	10642	14812	-0.274	0.0353	No
157	POU3F4	347	14859	-0.285	0.0344	No
158	TBX4	5633	14876	-0.290	0.0351	No
159	BCL11B	7190	15102	-0.349	0.0247	No
160	AP4M1	3499 16656	15134	-0.359	0.0250	No
161	HABP4	12145	15204	-0.377	0.0232	No
162	MCC	552	15236	-0.389	0.0236	No
163	HOXC8	4865	15332	-0.421	0.0207	No
164	HOXC4	4864	15523	-0.493	0.0131	No
165	SIN3A	5442	15952	-0.728	-0.0063	No
166	CLPX	19403	15993	-0.763	-0.0044	No
167	DHX8	20649	16062	-0.808	-0.0037	No
168	HBP1	2048 2162 21086	16304	-0.998	-0.0115	No
169	FBXW7	1805 11928	16322	-1.003	-0.0070	No
170	E2F3	21500 8874	16351	-1.017	-0.0031	No
171	TPP2	14257	16533	-1.181	-0.0066	No
172	STOML2	15902	16821	-1.509	-0.0141	No
173	ATBF1	916 8633	16857	-1.556	-0.0077	No
174	PDE7A	9544 1788	17134	-1.859	-0.0127	No
175	MCM7	9372 3568	17165	-1.899	-0.0042	No
176	MPP6	17448	17920	-3.415	-0.0268	No
177	TOB1	20703	17958	-3.518	-0.0100	No
178	CPN1	23667	18098	-3.897	0.0033	No
179	LMO4	15151	18276	-4.622	0.0184	No