Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_DMpreB.phenotype_transDMproB_versus_DMpreB.cls #transDMproB_versus_DMpreB.phenotype_transDMproB_versus_DMpreB.cls #transDMproB_versus_DMpreB_repos
Phenotype	phenotype_transDMproB_versus_DMpreB.cls#transDMproB_versus_DMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC2_01
Enrichment Score (ES)	0.5810969
Normalized Enrichment Score (NES)	1.5863699
Nominal p-value	0.0
FDR q-value	0.04996974
FWER p-Value	0.372

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	2	10.887	0.0565	Yes
2	KLF3	4961	29	9.444	0.1042	Yes
3	MARCKS	9331	41	8.902	0.1499	Yes
4	BCL11A	4691	159	6.951	0.1797	Yes
5	NDRG1	22276	161	6.937	0.2157	Yes
6	NFIX	9458	199	6.474	0.2473	Yes
7	MBNL2	21932	205	6.438	0.2805	Yes
8	SEPP1	22524	249	6.088	0.3098	Yes
9	SMAD5	21621	269	5.871	0.3393	Yes
10	SQSTM1	9517	338	5.381	0.3636	Yes
11	ABTB1	17075	431	4.793	0.3835	Yes
12	HOXB4	20686	456	4.654	0.4064	Yes
13	RAB6IP1	17676	473	4.566	0.4293	Yes
14	DUSP1	23061	532	4.376	0.4489	Yes
15	PRKCH	21246	560	4.274	0.4697	Yes
16	TIAM1	22547	609	4.034	0.4880	Yes
17	PPAP2B	7503 16161	856	3.293	0.4918	Yes
18	TBCC	23215	897	3.189	0.5062	Yes
19	CDKN1A	4511 8729	1034	2.865	0.5137	Yes
20	CHD2	10847	1177	2.569	0.5194	Yes
21	BRIP1	20311	1224	2.480	0.5298	Yes
22	AXL	17922	1358	2.215	0.5341	Yes
23	PPM1D	20721	1407	2.132	0.5426	Yes
24	UTX	10266 2574	1503	1.992	0.5478	Yes
25	UHRF2	3731 4262 8452 23887	1605	1.854	0.5519	Yes
26	HIBADH	17144	1610	1.847	0.5613	Yes
27	EGLN1	8504 18707 4298	1705	1.718	0.5652	Yes
28	ETV5	22630	1802	1.629	0.5684	Yes
29	PCF11	121	1970	1.442	0.5669	Yes
30	CDKN1C	17546	2111	1.301	0.5660	Yes
31	KBTBD2	17137	2234	1.184	0.5656	Yes
32	RBM4	9706 3693	2253	1.162	0.5706	Yes
33	BCL9	15232	2272	1.139	0.5756	Yes
34	UBE2H	5823 5822	2433	1.005	0.5721	Yes
35	PITPNC1	7759	2612	0.862	0.5670	Yes
36	ZADH2	23501	2700	0.782	0.5663	Yes
37	IL6ST	4920	2717	0.771	0.5694	Yes
38	PAK1	9527	2767	0.720	0.5705	Yes
39	BCAS3	5314	2779	0.711	0.5736	Yes
40	SH3GL3	18201	2790	0.702	0.5767	Yes
41	MRVI1	17674 1020 2526	2854	0.647	0.5767	Yes
42	MBNL1	1921 15582	2963	0.575	0.5738	Yes
43	DNAJB12	7146	2971	0.571	0.5764	Yes
44	TCF15	14798	2988	0.559	0.5785	Yes
45	NAP1L3	24266	3011	0.549	0.5801	Yes
46	CPNE1	11186	3061	0.519	0.5802	Yes
47	RPS18	1529 5397 1603	3093	0.504	0.5811	Yes
48	ATBF1	916 8633	3161	0.464	0.5799	No
49	NFRKB	10642	3361	0.376	0.5710	No
50	MAP4K5	11853 21048 2101 2142	3458	0.336	0.5676	No
51	HIPK1	4851	3522	0.312	0.5658	No
52	PLCB2	5262	3787	0.233	0.5527	No
53	THRA	1447 10171 1406	3826	0.224	0.5518	No
54	EYA1	4695 4061	3919	0.200	0.5478	No
55	DHRS3	15997	3946	0.193	0.5474	No
56	PHF15	20467 8050	3986	0.184	0.5463	No
57	PELI2	8217	4050	0.172	0.5437	No
58	VPS52	23287 1622	4069	0.169	0.5436	No
59	PIK3C2A	17667	4070	0.168	0.5445	No
60	DUSP4	18632 3820	4129	0.160	0.5422	No
61	STK3	7084	4281	0.137	0.5347	No
62	FOXB1	12254 19069	4317	0.132	0.5335	No
63	MMP13	19573 3007	4386	0.120	0.5305	No
64	HEBP2	19812	4506	0.106	0.5246	No
65	EZH1	20217	4546	0.101	0.5230	No
66	TCF1	16416	4599	0.096	0.5206	No
67	RORA	3019 5388	4686	0.088	0.5164	No
68	CALD1	4273 8463	4749	0.083	0.5135	No
69	RASD1	20424	4940	0.071	0.5036	No
70	STOML3	15594	4967	0.070	0.5025	No
71	PITX2	15424 1878	5066	0.065	0.4975	No
72	NRAP	23642	5385	0.050	0.4806	No
73	MITF	17349	5440	0.048	0.4779	No
74	NGEF	13891	5533	0.045	0.4731	No
75	VIT	23155	5816	0.037	0.4580	No
76	TRPC4	15593	5944	0.034	0.4513	No
77	KCTD15	17864	6209	0.028	0.4371	No
78	HOXA11	17146	6300	0.026	0.4324	No
79	HAND2	18615	6345	0.025	0.4301	No
80	MAFF	22423 2243	6483	0.023	0.4228	No
81	PCDH18	15348	6680	0.019	0.4123	No
82	BRUNOL6	19421	6795	0.017	0.4062	No
83	ACCN1	20327 1194	6825	0.017	0.4047	No
84	MRGPRF	17995	7111	0.012	0.3893	No
85	SLC2A4	20380	7171	0.011	0.3862	No
86	IRS4	9183 4926	7411	0.008	0.3733	No
87	MLLT6	20678	7530	0.006	0.3669	No
88	BMP2	14833	7661	0.004	0.3599	No
89	GNPNAT1	12027 7031	7745	0.003	0.3554	No
90	SYT1	5565	7856	0.002	0.3494	No
91	HHIP	4849	8030	-0.000	0.3400	No
92	ENPP2	9548	8049	-0.001	0.3391	No
93	GPR4	18364	8145	-0.002	0.3339	No
94	RBM16	11492 8387	8175	-0.003	0.3324	No
95	SCRN3	14984	8198	-0.003	0.3312	No
96	PLUNC	9593	8412	-0.006	0.3197	No
97	ROR1	6472	8593	-0.008	0.3099	No
98	DHX8	20649	8662	-0.009	0.3063	No
99	RASGEF1B	11515 16469	8707	-0.010	0.3040	No
100	CLDN8	22549 1747	8838	-0.011	0.2970	No
101	PURA	9670	9307	-0.018	0.2717	No
102	DSTN	14823	9445	-0.020	0.2644	No
103	RARA	5358	9584	-0.022	0.2570	No
104	FOXP2	4312 17523 8523	9742	-0.024	0.2486	No
105	SYT6	13437 7042 12040	9929	-0.027	0.2387	No
106	FGF12	1723 22621	9994	-0.028	0.2353	No
107	AP1G2	2677 21827	10043	-0.029	0.2329	No
108	AKT2	4365 4366	10089	-0.030	0.2306	No
109	SLC34A3	14664	10267	-0.033	0.2212	No
110	EVI1	4689 8926	10413	-0.036	0.2135	No
111	CD2AP	22975	10510	-0.037	0.2085	No
112	GREM1	14485	10521	-0.037	0.2081	No
113	PAPPA	16190	10574	-0.038	0.2055	No
114	CITED2	5118 14477	10616	-0.039	0.2035	No
115	HOXD9	14982	10707	-0.040	0.1988	No
116	SLC38A3	13319	10929	-0.045	0.1871	No
117	HR	3622 9119	11074	-0.048	0.1795	No
118	PCSK1	21600	11208	-0.051	0.1726	No
119	EN2	16898	11277	-0.052	0.1691	No
120	PLAG1	7148 15949 12161	11529	-0.058	0.1558	No
121	HOXC12	22343	11534	-0.058	0.1559	No
122	CXXC5	12523	11557	-0.059	0.1550	No
123	FOSL2	4733 8978 16878	11587	-0.060	0.1538	No
124	SLITRK5	21939	11609	-0.060	0.1529	No
125	MID1	5097 5098	11671	-0.062	0.1499	No
126	BDNF	14926 2797	11691	-0.062	0.1492	No
127	PRDM1	19775 3337	11694	-0.062	0.1495	No
128	POU3F3	14261	11726	-0.063	0.1481	No
129	BMP5	19376	11749	-0.064	0.1472	No
130	FGF20	18892	11835	-0.067	0.1430	No
131	FBXW7	1805 11928	11871	-0.068	0.1414	No
132	NRG1	3885	12073	-0.075	0.1309	No
133	EPHB3	22816	12211	-0.080	0.1239	No
134	EN1	387 14155	12477	-0.092	0.1100	No
135	FGF9	8966	12531	-0.094	0.1076	No
136	LRP5	23948 9285	12876	-0.111	0.0896	No
137	CGA	16246	12911	-0.114	0.0883	No
138	DSG4	9262 23616	13159	-0.129	0.0756	No
139	TGFB3	10161	13186	-0.131	0.0748	No
140	CD109	6174 10656 19369	13243	-0.135	0.0725	No
141	ERG	1686 8915	13277	-0.137	0.0714	No
142	KLF12	4960 2637 21732 9228	13321	-0.141	0.0698	No
143	ADAM12	2207 8545	13702	-0.174	0.0501	No
144	WEE1	18127	13796	-0.184	0.0460	No
145	EXT1	22297	13817	-0.187	0.0459	No
146	GPRC5C	12864	13855	-0.191	0.0449	No
147	OFCC1	21486	14073	-0.215	0.0343	No
148	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	14344	-0.253	0.0209	No
149	TBX4	5633	14471	-0.277	0.0155	No
150	HABP4	12145	14531	-0.289	0.0138	No
151	MCC	552	14634	-0.315	0.0100	No
152	DTNA	8870 4647 23611 1991	14636	-0.315	0.0115	No
153	IGF1	3352 9156 3409	14678	-0.326	0.0110	No
154	ARID4A	2080 6215	14683	-0.328	0.0125	No
155	SIN3A	5442	14813	-0.359	0.0074	No
156	SMAD1	18831 922	14865	-0.374	0.0065	No
157	BCL11B	7190	14886	-0.380	0.0074	No
158	RAD21	22298	14963	-0.404	0.0054	No
159	NFIB	15855	15064	-0.439	0.0023	No
160	NNT	3273 5181 9471 3238	15173	-0.484	-0.0011	No
161	CDX2	16289	15282	-0.527	-0.0042	No
162	POU3F4	347	15458	-0.633	-0.0104	No
163	HOXC8	4865	15522	-0.664	-0.0104	No
164	AP4M1	3499 16656	15528	-0.668	-0.0072	No
165	HOXC4	4864	15695	-0.780	-0.0121	No
166	E2F3	21500 8874	16104	-1.060	-0.0287	No
167	PROX1	9623	16126	-1.071	-0.0243	No
168	STOML2	15902	16273	-1.202	-0.0260	No
169	CHCHD7	16280	16366	-1.289	-0.0242	No
170	CLPX	19403	16400	-1.335	-0.0191	No
171	HBP1	2048 2162 21086	16634	-1.578	-0.0235	No
172	DOCK3	9920 5537 10751	16654	-1.587	-0.0163	No
173	TPP2	14257	16832	-1.791	-0.0166	No
174	PDE7A	9544 1788	16836	-1.794	-0.0074	No
175	TOB1	20703	17150	-2.224	-0.0128	No
176	MPP6	17448	17954	-4.052	-0.0353	No
177	CPN1	23667	17997	-4.189	-0.0158	No
178	LMO4	15151	18076	-4.510	0.0034	No
179	MCM7	9372 3568	18211	-4.973	0.0220	No