Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	Set_04_transDMpreB_versus_WTpreB.phenotype_transDMpreB_versus_WTpreB.cls #transDMpreB_versus_WTpreB
Phenotype	phenotype_transDMpreB_versus_WTpreB.cls#transDMpreB_versus_WTpreB
Upregulated in class	WTpreB
GeneSet	V$FREAC2_01
Enrichment Score (ES)	-0.60908437
Normalized Enrichment Score (NES)	-1.5790793
Nominal p-value	0.0
FDR q-value	0.06517958
FWER p-Value	0.379

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MPP6	17448	377	4.960	0.0069	No
2	CPN1	23667	745	3.579	0.0067	No
3	ATBF1	916 8633	784	3.485	0.0238	No
4	RBM4	9706 3693	824	3.365	0.0402	No
5	TIAM1	22547	969	2.969	0.0488	No
6	VPS52	23287 1622	1113	2.696	0.0559	No
7	TPP2	14257	1509	2.041	0.0457	No
8	MCM7	9372 3568	1539	1.995	0.0551	No
9	SIN3A	5442	1765	1.683	0.0522	No
10	NFIX	9458	1992	1.413	0.0477	No
11	STOML2	15902	2264	1.073	0.0389	No
12	DHX8	20649	2280	1.052	0.0439	No
13	E2F3	21500 8874	2288	1.048	0.0493	No
14	HBP1	2048 2162 21086	2363	0.999	0.0508	No
15	FBXW7	1805 11928	2368	0.998	0.0561	No
16	NFRKB	10642	2480	0.910	0.0551	No
17	EGLN1	8504 18707 4298	2583	0.839	0.0542	No
18	HABP4	12145	2590	0.835	0.0584	No
19	PCF11	121	2884	0.602	0.0459	No
20	BRIP1	20311	2922	0.572	0.0470	No
21	CLPX	19403	3005	0.519	0.0454	No
22	IL6ST	4920	3188	0.416	0.0378	No
23	FOXP2	4312 17523 8523	3234	0.394	0.0376	No
24	RAD21	22298	3266	0.383	0.0380	No
25	DNAJB12	7146	3354	0.348	0.0352	No
26	CHCHD7	16280	3470	0.308	0.0307	No
27	WEE1	18127	3500	0.297	0.0307	No
28	DTNA	8870 4647 23611 1991	3730	0.242	0.0196	No
29	BCL11B	7190	3740	0.240	0.0205	No
30	HOXC8	4865	3789	0.230	0.0191	No
31	HOXC4	4864	3935	0.203	0.0124	No
32	PROX1	9623	3960	0.200	0.0122	No
33	TBX4	5633	4061	0.182	0.0078	No
34	AP1G2	2677 21827	4179	0.166	0.0023	No
35	PLCB2	5262	4288	0.153	-0.0027	No
36	PAK1	9527	4333	0.148	-0.0043	No
37	MRVI1	17674 1020 2526	4461	0.136	-0.0104	No
38	MID1	5097 5098	4512	0.131	-0.0124	No
39	HR	3622 9119	4597	0.124	-0.0163	No
40	DSG4	9262 23616	4775	0.111	-0.0252	No
41	HOXD9	14982	4960	0.099	-0.0347	No
42	NRG1	3885	5099	0.090	-0.0417	No
43	AXL	17922	5133	0.089	-0.0430	No
44	GPRC5C	12864	5208	0.085	-0.0465	No
45	PHF15	20467 8050	5278	0.082	-0.0498	No
46	PCDH18	15348	5461	0.074	-0.0593	No
47	NRAP	23642	5563	0.069	-0.0644	No
48	SYT6	13437 7042 12040	5616	0.067	-0.0668	No
49	UBE2H	5823 5822	5656	0.066	-0.0686	No
50	KCTD15	17864	5681	0.065	-0.0695	No
51	CD2AP	22975	5774	0.062	-0.0742	No
52	ARID4A	2080 6215	5853	0.060	-0.0781	No
53	ADAM12	2207 8545	6068	0.054	-0.0894	No
54	BDNF	14926 2797	6224	0.050	-0.0975	No
55	SLITRK5	21939	6364	0.047	-0.1048	No
56	CITED2	5118 14477	6507	0.044	-0.1122	No
57	FOSL2	4733 8978 16878	6535	0.043	-0.1135	No
58	PIK3C2A	17667	6785	0.038	-0.1267	No
59	SLC2A4	20380	6830	0.038	-0.1289	No
60	EN1	387 14155	6942	0.036	-0.1348	No
61	PITX2	15424 1878	7188	0.031	-0.1479	No
62	STOML3	15594	7205	0.031	-0.1486	No
63	EN2	16898	7357	0.028	-0.1566	No
64	RARA	5358	7529	0.026	-0.1657	No
65	SLC34A3	14664	7609	0.025	-0.1699	No
66	BRUNOL6	19421	7776	0.022	-0.1788	No
67	PCSK1	21600	8125	0.018	-0.1975	No
68	EYA1	4695 4061	8206	0.017	-0.2018	No
69	HOXC12	22343	8308	0.015	-0.2072	No
70	AKT2	4365 4366	8327	0.015	-0.2081	No
71	TCF1	16416	8601	0.011	-0.2228	No
72	KLF12	4960 2637 21732 9228	8710	0.010	-0.2286	No
73	FGF12	1723 22621	8850	0.008	-0.2361	No
74	FGF20	18892	8888	0.008	-0.2381	No
75	CALD1	4273 8463	8892	0.008	-0.2382	No
76	IGF1	3352 9156 3409	8900	0.008	-0.2385	No
77	RASGEF1B	11515 16469	9034	0.006	-0.2457	No
78	CLDN8	22549 1747	9068	0.006	-0.2475	No
79	SH3GL3	18201	9088	0.005	-0.2485	No
80	RBM16	11492 8387	9104	0.005	-0.2492	No
81	ROR1	6472	9160	0.004	-0.2522	No
82	NFIB	15855	9395	0.001	-0.2649	No
83	EVI1	4689 8926	9425	0.001	-0.2665	No
84	SCRN3	14984	9501	0.000	-0.2705	No
85	SYT1	5565	9505	-0.000	-0.2707	No
86	PLUNC	9593	9560	-0.001	-0.2736	No
87	RORA	3019 5388	9585	-0.001	-0.2749	No
88	ENPP2	9548	9593	-0.001	-0.2753	No
89	ERG	1686 8915	9637	-0.002	-0.2776	No
90	ACCN1	20327 1194	9718	-0.003	-0.2819	No
91	GPR4	18364	9928	-0.006	-0.2932	No
92	BMP2	14833	9957	-0.006	-0.2947	No
93	DSTN	14823	10605	-0.014	-0.3297	No
94	PURA	9670	10677	-0.015	-0.3335	No
95	HAND2	18615	10785	-0.017	-0.3392	No
96	IRS4	9183 4926	10847	-0.018	-0.3424	No
97	VIT	23155	10851	-0.018	-0.3425	No
98	CXXC5	12523	10860	-0.018	-0.3428	No
99	MAFF	22423 2243	11109	-0.021	-0.3561	No
100	POU3F3	14261	11115	-0.021	-0.3563	No
101	GNPNAT1	12027 7031	11228	-0.023	-0.3622	No
102	MRGPRF	17995	11251	-0.023	-0.3633	No
103	MMP13	19573 3007	11321	-0.024	-0.3669	No
104	EPHB3	22816	11483	-0.027	-0.3755	No
105	MLLT6	20678	11644	-0.030	-0.3840	No
106	HHIP	4849	11746	-0.032	-0.3893	No
107	PRDM1	19775 3337	11762	-0.032	-0.3900	No
108	MITF	17349	11768	-0.032	-0.3901	No
109	TCF15	14798	11792	-0.032	-0.3911	No
110	NAP1L3	24266	11817	-0.033	-0.3922	No
111	FOXB1	12254 19069	11903	-0.034	-0.3967	No
112	SMAD1	18831 922	12523	-0.048	-0.4300	No
113	HOXA11	17146	12543	-0.049	-0.4307	No
114	TRPC4	15593	12582	-0.050	-0.4325	No
115	PLAG1	7148 15949 12161	12683	-0.053	-0.4377	No
116	NGEF	13891	12817	-0.055	-0.4446	No
117	HEBP2	19812	12933	-0.059	-0.4505	No
118	SLC38A3	13319	12965	-0.060	-0.4518	No
119	LRP5	23948 9285	13028	-0.062	-0.4548	No
120	GREM1	14485	13269	-0.071	-0.4675	No
121	PELI2	8217	13402	-0.076	-0.4742	No
122	RASD1	20424	13475	-0.079	-0.4777	No
123	BMP5	19376	13482	-0.079	-0.4776	No
124	HIPK1	4851	13544	-0.082	-0.4804	No
125	PRKCH	21246	13564	-0.083	-0.4810	No
126	PAPPA	16190	13651	-0.089	-0.4852	No
127	DOCK3	9920 5537 10751	14150	-0.122	-0.5115	No
128	EZH1	20217	14359	-0.141	-0.5220	No
129	CDX2	16289	14431	-0.150	-0.5250	No
130	POU3F4	347	14590	-0.168	-0.5327	No
131	THRA	1447 10171 1406	14741	-0.189	-0.5398	No
132	DUSP4	18632 3820	14743	-0.190	-0.5388	No
133	PITPNC1	7759	14752	-0.191	-0.5382	No
134	CD109	6174 10656 19369	14797	-0.198	-0.5395	No
135	OFCC1	21486	14798	-0.198	-0.5384	No
136	DHRS3	15997	14934	-0.223	-0.5445	No
137	FGF9	8966	15041	-0.246	-0.5489	No
138	MAP4K5	11853 21048 2101 2142	15180	-0.275	-0.5548	No
139	NNT	3273 5181 9471 3238	15351	-0.322	-0.5623	No
140	STK3	7084	15356	-0.324	-0.5607	No
141	CPNE1	11186	15613	-0.426	-0.5722	No
142	AP4M1	3499 16656	15643	-0.438	-0.5714	No
143	CGA	16246	15826	-0.528	-0.5784	No
144	RPS18	1529 5397 1603	15882	-0.561	-0.5783	No
145	TGFB3	10161	15964	-0.628	-0.5792	No
146	MCC	552	16064	-0.708	-0.5807	No
147	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	16358	-1.001	-0.5910	No
148	NDRG1	22276	16526	-1.145	-0.5938	No
149	ZADH2	23501	16598	-1.223	-0.5909	No
150	PPAP2B	7503 16161	16743	-1.434	-0.5908	No
151	BCL11A	4691	17081	-1.926	-0.5985	Yes
152	BCL9	15232	17122	-1.993	-0.5897	Yes
153	EXT1	22297	17159	-2.061	-0.5803	Yes
154	SMAD5	21621	17187	-2.119	-0.5701	Yes
155	CHD2	10847	17373	-2.423	-0.5667	Yes
156	TOB1	20703	17438	-2.536	-0.5562	Yes
157	UHRF2	3731 4262 8452 23887	17523	-2.683	-0.5460	Yes
158	SEPP1	22524	17828	-3.455	-0.5435	Yes
159	PDE7A	9544 1788	17870	-3.580	-0.5260	Yes
160	MBNL1	1921 15582	17912	-3.707	-0.5078	Yes
161	HIBADH	17144	17950	-3.804	-0.4888	Yes
162	KLF3	4961	17951	-3.804	-0.4679	Yes
163	HOXB4	20686	17960	-3.831	-0.4472	Yes
164	RAB6IP1	17676	17966	-3.852	-0.4262	Yes
165	KBTBD2	17137	17980	-3.881	-0.4056	Yes
166	ETV5	22630	18044	-4.102	-0.3864	Yes
167	CDKN1C	17546	18168	-4.675	-0.3673	Yes
168	BCAS3	5314	18194	-4.836	-0.3420	Yes
169	PPM1D	20721	18221	-4.979	-0.3160	Yes
170	EMP1	17260	18249	-5.131	-0.2892	Yes
171	TBCC	23215	18279	-5.266	-0.2618	Yes
172	MBNL2	21932	18308	-5.400	-0.2335	Yes
173	CDKN1A	4511 8729	18334	-5.522	-0.2045	Yes
174	UTX	10266 2574	18342	-5.585	-0.1741	Yes
175	ABTB1	17075	18417	-6.175	-0.1441	Yes
176	LMO4	15151	18424	-6.264	-0.1099	Yes
177	SQSTM1	9517	18426	-6.279	-0.0753	Yes
178	DUSP1	23061	18438	-6.362	-0.0409	Yes
179	MARCKS	9331	18599	-9.166	0.0009	Yes