Details for gene set ORGANELLE

Table: GSEA Results Summary

Dataset	Set_04_DMpreB_versus_WTpreB.phenotype_DMpreB_versus_WTpreB.cls #DMpreB_versus_WTpreB
Phenotype	phenotype_DMpreB_versus_WTpreB.cls#DMpreB_versus_WTpreB
Upregulated in class	DMpreB
GeneSet	ORGANELLE_LUMEN
Enrichment Score (ES)	0.6171011
Normalized Enrichment Score (NES)	1.648342
Nominal p-value	0.0
FDR q-value	0.0150877815
FWER p-Value	0.238

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	GNL3	21894 3356	7	11.093	0.0168	Yes
2	IKBKAP	2540 6045	22	10.575	0.0324	Yes
3	NOLA2	11972	41	9.714	0.0465	Yes
4	EXOSC1	12379	42	9.704	0.0615	Yes
5	CIRH1A	18478	49	9.447	0.0759	Yes
6	LYAR	16856	63	9.035	0.0891	Yes
7	RRP9	19328	75	8.887	0.1023	Yes
8	NOLA3	14914	94	8.446	0.1144	Yes
9	MKI67IP	7509	105	8.273	0.1267	Yes
10	MRPL12	12090	131	7.847	0.1375	Yes
11	SDAD1	16479	135	7.814	0.1494	Yes
12	DDX21	19751	140	7.763	0.1612	Yes
13	RUVBL2	9766	175	7.313	0.1707	Yes
14	RPP38	14698	191	7.125	0.1809	Yes
15	POLR1E	7226	194	7.093	0.1918	Yes
16	MRPS18A	23222	221	6.816	0.2010	Yes
17	MYBBP1A	5217 1232 5216	242	6.645	0.2102	Yes
18	TIMM50	17911	245	6.615	0.2203	Yes
19	MRPS12	17907 6273	250	6.599	0.2303	Yes
20	MRPS15	2442 12345	252	6.595	0.2405	Yes
21	CHAF1B	22694	275	6.393	0.2492	Yes
22	CPSF1	22241	298	6.229	0.2576	Yes
23	NOLC1	7704	329	5.999	0.2653	Yes
24	U2AF1	8431	346	5.954	0.2737	Yes
25	BCKDHB	19365	353	5.902	0.2825	Yes
26	MRPL55	20864	391	5.583	0.2891	Yes
27	ELP3	21782	413	5.444	0.2964	Yes
28	SUPV3L1	11677	415	5.428	0.3047	Yes
29	CDKN2A	2491 15841	423	5.401	0.3127	Yes
30	NSUN2	21610	447	5.321	0.3197	Yes
31	MORF4L2	12118	457	5.277	0.3274	Yes
32	ACN9	12920	470	5.235	0.3349	Yes
33	SMARCC1	9834 5459	491	5.117	0.3417	Yes
34	NOL1	8472 17280	492	5.113	0.3496	Yes
35	MCM7	9372 3568	497	5.089	0.3573	Yes
36	GTF2H4	22999	506	5.026	0.3646	Yes
37	MRPS28	15377	512	4.994	0.3721	Yes
38	ASH2L	6212	520	4.967	0.3794	Yes
39	MRPL23	9738	563	4.763	0.3845	Yes
40	CHAF1A	23188	585	4.687	0.3906	Yes
41	GEMIN4	6592 6591	612	4.590	0.3963	Yes
42	HDAC1	9081	637	4.477	0.4019	Yes
43	POLR2J	16672	654	4.444	0.4080	Yes
44	KPNA2	9245	672	4.392	0.4138	Yes
45	WDHD1	21859	685	4.321	0.4199	Yes
46	PPARGC1B	9318	687	4.318	0.4265	Yes
47	RPP30	23877	704	4.259	0.4322	Yes
48	MRPL40	22641	728	4.188	0.4375	Yes
49	RPA1	20349	739	4.140	0.4433	Yes
50	CYCS	8821	744	4.120	0.4495	Yes
51	PIN4	12817	772	4.023	0.4543	Yes
52	GEMIN5	20439	782	3.993	0.4600	Yes
53	TIMM44	3858 18941	797	3.953	0.4653	Yes
54	NCL	5153 13899	818	3.882	0.4702	Yes
55	NOL5A	12474	822	3.875	0.4761	Yes
56	MRPS18C	12728	877	3.746	0.4789	Yes
57	MPG	20929	878	3.744	0.4847	Yes
58	HTRA2	1122 17103	910	3.606	0.4886	Yes
59	MRE11A	3014 19560	942	3.490	0.4923	Yes
60	HDAC6	24197	958	3.449	0.4969	Yes
61	GTF3C3	418	967	3.422	0.5017	Yes
62	ETFB	18279	988	3.350	0.5058	Yes
63	HMGA1	23323	1003	3.313	0.5102	Yes
64	ALDH4A1	16011	1022	3.249	0.5143	Yes
65	POLI	23410	1094	3.079	0.5151	Yes
66	RPS19	5398	1114	3.041	0.5188	Yes
67	HDAC2	20055	1117	3.037	0.5234	Yes
68	MRPS11	12621 3150	1119	3.033	0.5281	Yes
69	MPHOSPH1	23878	1135	2.997	0.5319	Yes
70	ILF2	12582	1140	2.991	0.5363	Yes
71	ASNA1	18810	1178	2.912	0.5388	Yes
72	COIL	20708	1187	2.892	0.5428	Yes
73	SNAPC4	10424	1286	2.673	0.5416	Yes
74	TAF6	16322 891	1392	2.435	0.5396	Yes
75	RUVBL1	7131 7130	1422	2.384	0.5418	Yes
76	HDAC3	4844	1450	2.336	0.5439	Yes
77	POP1	2214 7482	1457	2.327	0.5472	Yes
78	SFRS2IP	7794 13009	1463	2.316	0.5505	Yes
79	MRPL10	20681	1465	2.309	0.5540	Yes
80	GTF2F1	13599	1480	2.279	0.5568	Yes
81	TOP2A	20257	1496	2.253	0.5595	Yes
82	NARG1	7934 917	1510	2.235	0.5622	Yes
83	TCOF1	5660	1570	2.162	0.5623	Yes
84	PARP1	8559 14027	1576	2.152	0.5654	Yes
85	ETFA	4292 8495 3155	1594	2.133	0.5678	Yes
86	PTBP1	5303	1596	2.132	0.5710	Yes
87	OIP5	2919 14468	1618	2.101	0.5731	Yes
88	ACADM	15133 1800	1654	2.046	0.5744	Yes
89	MED4	21962	1656	2.045	0.5775	Yes
90	POLG2	20180	1669	2.029	0.5800	Yes
91	EED	17759	1687	1.998	0.5822	Yes
92	GTF3C4	14635 6521	1773	1.863	0.5804	Yes
93	MRPS16	12311	1775	1.862	0.5832	Yes
94	SRP68	20143	1796	1.834	0.5850	Yes
95	HDAC10	22165	1814	1.806	0.5868	Yes
96	FOXF2	21677	1862	1.734	0.5870	Yes
97	KRR1	6989 3313	1888	1.690	0.5882	Yes
98	POLR3H	13460 8135	1925	1.634	0.5888	Yes
99	TBP	671 1554	1943	1.603	0.5903	Yes
100	XRCC6	2286 8991	1950	1.597	0.5925	Yes
101	ERCC8	12982 3255 3187	1953	1.591	0.5948	Yes
102	MRPS10	7229 12261 23212	1978	1.577	0.5960	Yes
103	SURF6	9945	1996	1.557	0.5974	Yes
104	MRPL51	12361 7301	1997	1.557	0.5999	Yes
105	SLC29A2	23775	2054	1.492	0.5991	Yes
106	POP7	16329	2069	1.468	0.6006	Yes
107	FUSIP1	4715 16036	2100	1.442	0.6012	Yes
108	MRPS24	12262	2130	1.398	0.6018	Yes
109	SEP15	13527 1895 15398	2175	1.346	0.6015	Yes
110	DDX11	23169	2182	1.335	0.6032	Yes
111	POLR2E	3325 19699	2210	1.298	0.6037	Yes
112	SMARCE1	1218 20253	2218	1.286	0.6054	Yes
113	NAP1L4	17543	2237	1.257	0.6063	Yes
114	ERCC3	23605	2238	1.255	0.6083	Yes
115	EMG1	1016 17005	2257	1.235	0.6092	Yes
116	MRPS21	12323	2329	1.142	0.6071	Yes
117	BCKDK	18061 1391	2336	1.134	0.6085	Yes
118	TAF11	12733	2390	1.069	0.6073	Yes
119	TAF5	23833 5934 3759	2443	1.030	0.6060	Yes
120	CHEK2	16751 3587	2444	1.029	0.6076	Yes
121	NDUFAB1	7667	2456	1.022	0.6086	Yes
122	ZNF638	9476	2464	1.014	0.6098	Yes
123	DNAJA3	1732 13518	2479	1.005	0.6106	Yes
124	GEMIN6	12492 7415	2508	0.998	0.6106	Yes
125	ACTL6A	12136 13068 16662 3457 3554	2538	0.981	0.6105	Yes
126	MRPS35	17237 1068	2542	0.980	0.6119	Yes
127	RPL3	11330	2545	0.977	0.6133	Yes
128	ATP5F1	15212	2606	0.908	0.6114	Yes
129	NUDT21	12665	2612	0.905	0.6125	Yes
130	SAP30	18871	2624	0.896	0.6133	Yes
131	HES6	13882 4058	2640	0.878	0.6139	Yes
132	POLR2A	5394	2654	0.858	0.6145	Yes
133	SMARCA5	8215	2663	0.846	0.6154	Yes
134	KLHL7	16907	2690	0.827	0.6152	Yes
135	TRPC4AP	14379 12125	2724	0.792	0.6146	Yes
136	MED6	21028	2728	0.788	0.6157	Yes
137	IVNS1ABP	4384 4050	2745	0.769	0.6160	Yes
138	ACTB	8534 337 337 338	2748	0.768	0.6171	Yes
139	SFRS2	9807 20136	2789	0.733	0.6161	No
140	PRPF31	7594	2865	0.667	0.6130	No
141	SMARCB1	19728	2950	0.599	0.6093	No
142	NR6A1	14596	3015	0.547	0.6067	No
143	GRPEL1	16863	3022	0.544	0.6072	No
144	ARID4A	2080 6215	3041	0.533	0.6070	No
145	TAF12	2537 16058 2338	3042	0.532	0.6078	No
146	NCOA6	2876 14382	3151	0.461	0.6027	No
147	SAP18	5406	3203	0.438	0.6005	No
148	RBM14	3673 12087	3231	0.429	0.5997	No
149	POLH	22966	3377	0.361	0.5924	No
150	NKX2-5	23060	3499	0.326	0.5862	No
151	POLR3C	15235	3504	0.325	0.5865	No
152	RPP40	21491	3569	0.308	0.5835	No
153	RPL36	12024	3570	0.308	0.5840	No
154	RBPJ	9709 3594 5370	3602	0.302	0.5828	No
155	EXOSC10	2482 11943	3655	0.286	0.5804	No
156	NOL6	2385 2405 15913 2466	3677	0.279	0.5796	No
157	PMF1	12452	3800	0.251	0.5734	No
158	SMAD2	23511	3907	0.229	0.5679	No
159	NAP1L1	19882 3427 330 9485 5193	4002	0.214	0.5631	No
160	GTF2H1	4069 18236	4080	0.203	0.5592	No
161	MDM2	19620 3327	4090	0.202	0.5590	No
162	CASQ1	13752 8695	4209	0.184	0.5529	No
163	XRN2	2936 6302 2905	4224	0.182	0.5524	No
164	CS	19839	4271	0.177	0.5501	No
165	BCKDHA	17925	4286	0.175	0.5496	No
166	PRM2	9621	4331	0.169	0.5475	No
167	GTF3C5	14638 2685	4426	0.158	0.5426	No
168	CDK8	6455 6456 3585 3542	4437	0.157	0.5423	No
169	POLQ	13407 22768	4465	0.154	0.5411	No
170	TAF9	3213 8433	4594	0.141	0.5343	No
171	TOP1	5790 5789 10210	4715	0.132	0.5279	No
172	CPSF3	7038	4726	0.131	0.5276	No
173	CENPF	13723	4809	0.124	0.5233	No
174	FOXE3	15801	4815	0.123	0.5232	No
175	NAP1L3	24266	4913	0.117	0.5181	No
176	NPAS2	5186	4919	0.117	0.5180	No
177	IFI16	13745	4948	0.115	0.5166	No
178	NUP98	17726	4972	0.114	0.5156	No
179	NOL4	2028 11432	5084	0.108	0.5097	No
180	LRCH4	10544 6090	5115	0.106	0.5082	No
181	PTF1A	15110	5184	0.102	0.5046	No
182	WDR4	1629 1521 12190 7175	5312	0.095	0.4978	No
183	XPO1	4172	5363	0.093	0.4952	No
184	DBT	1770 4599	5477	0.087	0.4892	No
185	ARID1A	8214 2501 13554	5492	0.086	0.4886	No
186	PITRM1	21710	5606	0.082	0.4825	No
187	TDG	10107 5703	5609	0.081	0.4825	No
188	NOL3	18496 915 921	5716	0.076	0.4768	No
189	NPM1	1196	5908	0.070	0.4665	No
190	BNIP3	17581	5936	0.068	0.4651	No
191	NF2	1222 5166	6068	0.064	0.4581	No
192	TIMM23	7004 5768	6240	0.059	0.4488	No
193	GCM1	19372	6273	0.058	0.4471	No
194	TFIP11	16746	6664	0.050	0.4259	No
195	SMARCD3	12446	6700	0.049	0.4241	No
196	FMR1	24321	6848	0.046	0.4161	No
197	CBX1	8704 19044	7720	0.029	0.3685	No
198	HIF1A	4850	7746	0.029	0.3672	No
199	NDUFS1	13940	7761	0.028	0.3665	No
200	DDX56	6984	8142	0.023	0.3457	No
201	TAF7	6287 1968	8311	0.020	0.3366	No
202	TEP1	21849	8317	0.020	0.3363	No
203	GLIS2	8179 13500	8332	0.020	0.3356	No
204	PML	3015 3074 3020 5270	8349	0.020	0.3347	No
205	POLR3K	12447 7372	8351	0.020	0.3347	No
206	TAF4	14319	8745	0.015	0.3132	No
207	UBTF	1313 10052	8751	0.015	0.3130	No
208	ATXN3	21001 2051	8998	0.012	0.2996	No
209	HTATIP	3690	9069	0.011	0.2957	No
210	NFS1	2903 14377	9076	0.011	0.2954	No
211	ERCC2	1549 18363 3812	9115	0.010	0.2934	No
212	TOPBP1	10659	9405	0.006	0.2776	No
213	RCN1	9710	9422	0.006	0.2767	No
214	NAP1L2	24087	9568	0.004	0.2688	No
215	UBE2I	5819 5820	9755	0.002	0.2586	No
216	POLA1	24112	9841	0.001	0.2540	No
217	FIGLA	17383	9871	0.001	0.2524	No
218	EPAS1	23144	10151	-0.003	0.2371	No
219	EXOSC9	15610	10195	-0.003	0.2348	No
220	NCR1	18409	10246	-0.004	0.2321	No
221	CALR	18814	10420	-0.006	0.2226	No
222	NFYC	9460	10511	-0.007	0.2177	No
223	OGG1	17331	10522	-0.007	0.2172	No
224	ELP4	8094	10539	-0.008	0.2163	No
225	MRPS36	7257	10664	-0.009	0.2095	No
226	HIPK2	17180	10830	-0.012	0.2005	No
227	ATXN1	21477	10971	-0.014	0.1929	No
228	PITX2	15424 1878	10992	-0.014	0.1918	No
229	NLRP5	10743 18358	11032	-0.014	0.1897	No
230	WRN	5882 10315	11121	-0.016	0.1849	No
231	PAX8	2791 14671	11129	-0.016	0.1846	No
232	SHFM1	17220	11165	-0.016	0.1827	No
233	MRPS22	19031	11281	-0.018	0.1764	No
234	HS3ST1	16542	11313	-0.019	0.1748	No
235	EZH2	1092 17163	11493	-0.021	0.1650	No
236	POLR2B	16817	11867	-0.028	0.1446	No
237	MBTPS1	18730 3809 3770	11960	-0.029	0.1397	No
238	DNMT3A	2167 21330	12095	-0.032	0.1324	No
239	RTCD1	15183	12666	-0.046	0.1013	No
240	NEK11	3099 19016	12751	-0.048	0.0968	No
241	NUFIP1	21955	12878	-0.051	0.0899	No
242	DNAJB9	6565	12984	-0.054	0.0843	No
243	PHB	9558	13086	-0.057	0.0789	No
244	THRAP3	6062	13193	-0.061	0.0731	No
245	MCRS1	6961 6960 6962	13486	-0.072	0.0573	No
246	OPA1	13169 22800 7894	13601	-0.078	0.0512	No
247	ZBTB16	10647	13621	-0.079	0.0503	No
248	SPTBN4	13471 1104	13644	-0.080	0.0492	No
249	INTS6	5184 126	13737	-0.085	0.0443	No
250	GATM	14451	13842	-0.091	0.0387	No
251	MPHOSPH10	17805	13850	-0.092	0.0385	No
252	SP100	5482	13966	-0.100	0.0324	No
253	HSD3B1	15227	14029	-0.104	0.0291	No
254	ABL1	2693 4301 2794	14050	-0.106	0.0282	No
255	RBBP5	5620 5619	14126	-0.112	0.0243	No
256	TXNDC4	15886	14302	-0.129	0.0149	No
257	GTF3C1	10607 17646	14489	-0.150	0.0050	No
258	SMARCD1	2241 22360 2250	14682	-0.180	-0.0053	No
259	ELL2	5329	14731	-0.189	-0.0076	No
260	RSF1	18181	14766	-0.196	-0.0091	No
261	TOP2B	5791	14790	-0.199	-0.0101	No
262	CLOCK	8749 16507 4530	14905	-0.220	-0.0160	No
263	FGF18	4721 1351	14965	-0.232	-0.0189	No
264	TOPORS	15920	14980	-0.236	-0.0193	No
265	SMC3	8811 23815 8812 4571	15146	-0.275	-0.0278	No
266	ING2	18877	15190	-0.286	-0.0298	No
267	MYO6	19368	15206	-0.290	-0.0301	No
268	ELF4	24162	15221	-0.294	-0.0304	No
269	DEDD	14056	15224	-0.295	-0.0301	No
270	HSD3B2	4873 4874 15229 4875 9126	15241	-0.299	-0.0305	No
271	RPS7	9760	15330	-0.328	-0.0348	No
272	NDUFA13	7400	15469	-0.378	-0.0418	No
273	NUP54	11231 11232 6516	15488	-0.387	-0.0422	No
274	TAF6L	5923	15531	-0.410	-0.0438	No
275	HDAC9	21084 2131	15556	-0.425	-0.0445	No
276	MRPL52	22019	15646	-0.464	-0.0486	No
277	CHMP1A	10634	15699	-0.491	-0.0507	No
278	HDAC11	17356	15798	-0.548	-0.0552	No
279	TAP2	23282	15805	-0.551	-0.0547	No
280	PPARGC1A	16533	15891	-0.631	-0.0584	No
281	TFB2M	4024 9092 4083	15919	-0.654	-0.0588	No
282	EPC1	2039 8907 2033	15943	-0.675	-0.0590	No
283	NR3C1	9043	15983	-0.698	-0.0601	No
284	PHF21A	14943	16047	-0.765	-0.0623	No
285	APTX	2455 7291	16048	-0.765	-0.0612	No
286	HDAC8	24090	16057	-0.777	-0.0604	No
287	DDX24	2084 20995	16146	-0.876	-0.0638	No
288	KIN	15120	16209	-0.936	-0.0658	No
289	RPL35	12360	16257	-0.985	-0.0668	No
290	NFYA	5172	16265	-0.988	-0.0657	No
291	MEN1	3716 9382	16271	-0.994	-0.0644	No
292	HDAC5	1480 20205	16350	-1.042	-0.0671	No
293	RPL11	12450	16403	-1.103	-0.0682	No
294	CCNT1	22140 11607	16429	-1.133	-0.0678	No
295	DDX47	17261 12577 1133	16481	-1.197	-0.0687	No
296	ZNF148	5949	16515	-1.233	-0.0686	No
297	ZNF346	3163 6517 3193	16527	-1.248	-0.0673	No
298	ISG20	18210	16615	-1.383	-0.0699	No
299	MED12	24277	16713	-1.528	-0.0728	No
300	TRIM27	3264 9720	16750	-1.585	-0.0724	No
301	PHF12	11192 6483	16786	-1.647	-0.0717	No
302	CIB1	17780	16841	-1.714	-0.0720	No
303	HSP90B1	19657	16950	-1.834	-0.0751	No
304	GTF3C2	7749	16956	-1.842	-0.0725	No
305	CDK9	14619	16966	-1.859	-0.0701	No
306	HNRPK	9106 9105 3265 4861	17039	-1.960	-0.0710	No
307	DYRK1A	4649	17053	-1.982	-0.0687	No
308	EDF1	2890 12224	17068	-2.003	-0.0663	No
309	YEATS4	19621	17117	-2.105	-0.0657	No
310	TAF13	8288	17232	-2.288	-0.0684	No
311	TAF10	10785	17301	-2.423	-0.0683	No
312	SMUG1	22109	17308	-2.439	-0.0649	No
313	SMARCD2	13515	17353	-2.561	-0.0633	No
314	GEMIN7	17944	17407	-2.659	-0.0621	No
315	RB1	21754	17554	-2.982	-0.0655	No
316	SMARCA4	19538	17657	-3.250	-0.0660	No
317	GIT2	11174 6462	17770	-3.542	-0.0666	No
318	NFYB	5173	17805	-3.631	-0.0629	No
319	SMAD4	5058	17857	-3.759	-0.0598	No
320	RELA	23783	17959	-4.092	-0.0590	No
321	ERCC5	14255 4097	17997	-4.213	-0.0545	No
322	DDX54	7778	18055	-4.481	-0.0507	No
323	RBM39	9316 5032	18097	-4.627	-0.0457	No
324	HCLS1	22770	18104	-4.641	-0.0389	No
325	HDAC7A	22147	18129	-4.723	-0.0329	No
326	ASF1A	20025	18218	-5.113	-0.0298	No
327	PPP1R9B	20698	18242	-5.266	-0.0229	No
328	DEDD2	7429	18341	-5.737	-0.0193	No
329	LMO4	15151	18404	-6.210	-0.0131	No
330	ARNTL	18119	18441	-6.538	-0.0049	No
331	TP53	20822	18601	-9.320	0.0008	No