Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch_repos
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#wtNotch_versus_truncNotch_repos
Upregulated in class	truncNotch
GeneSet	V$SRF_Q4
Enrichment Score (ES)	-0.41942304
Normalized Enrichment Score (NES)	-1.2217482
Nominal p-value	0.07244318
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MCL1	1660672	6	4.296	0.0487	No
2	RBBP7	430113 450450 2370309	748	1.701	0.0279	No
3	HOXB4	540131	766	1.681	0.0461	No
4	AKAP12	1450739	900	1.545	0.0566	No
5	MAPK14	5290731	1301	1.150	0.0480	No
6	TPM3	670600 3170296 5670167 6650471	1548	0.998	0.0460	No
7	MMP14	670079	1620	0.964	0.0532	No
8	CFL1	2340735	1650	0.941	0.0623	No
9	EML4	5700373	1651	0.941	0.0731	No
10	TBL1X	6400524	1777	0.858	0.0761	No
11	SCOC	610048 2230053	1945	0.761	0.0757	No
12	MBNL1	2640762 7100048	2031	0.700	0.0791	No
13	DGKG	1770025	2154	0.643	0.0798	No
14	SLC25A4	2360519	2158	0.642	0.0870	No
15	ERBB2IP	580253 1090672	2205	0.621	0.0915	No
16	SORT1	1850242 2320632 3870537	2234	0.608	0.0970	No
17	FOXP1	6510433	2240	0.605	0.1036	No
18	CSDA	2470092 3060053 4780056	2332	0.572	0.1052	No
19	SVIL	2450347 4050735 4070576 4120706 5390161 5860142 6520278 7100397	2335	0.569	0.1116	No
20	KRTCAP2	5220040	2372	0.553	0.1159	No
21	PPP1R12A	4070066 4590162	2404	0.543	0.1204	No
22	CHD2	4070039	2546	0.490	0.1184	No
23	STAG2	4540132	2560	0.485	0.1232	No
24	VCL	4120487	2812	0.405	0.1142	No
25	ELF4	4850193	3035	0.330	0.1059	No
26	PHF12	870400 3130687	3125	0.306	0.1046	No
27	GADD45G	2510142	3423	0.240	0.0912	No
28	DUSP2	2370184	3442	0.235	0.0929	No
29	SRP54	2970605	3489	0.227	0.0930	No
30	MYL7	2480541	3597	0.205	0.0896	No
31	ARHGEF17	2060008	3632	0.200	0.0900	No
32	ROCK2	1780035 5720025	3640	0.199	0.0919	No
33	MAP2K6	1230056 2940204	4023	0.145	0.0728	No
34	CDKN1B	3800025 6450044	4044	0.142	0.0734	No
35	MID1	4070114 4760458	4239	0.124	0.0643	No
36	RERE	3940279	4324	0.117	0.0610	No
37	FGF17	3130022	4451	0.106	0.0554	No
38	EFHD1	4070358	5167	0.065	0.0174	No
39	EGR2	3800403	5178	0.065	0.0176	No
40	TNMD	3060520	5313	0.060	0.0110	No
41	SDPR	3360292	5440	0.055	0.0048	No
42	GPR20	6620601	5498	0.052	0.0023	No
43	TRIM46	3520609 4590010	5532	0.051	0.0011	No
44	FOSB	1940142	5598	0.049	-0.0018	No
45	NR2F2	3170609 3310577	5628	0.048	-0.0029	No
46	ATRX	2340039 3610132 4210373	5863	0.041	-0.0151	No
47	THBS1	4560494 430288	5939	0.039	-0.0187	No
48	RARB	430139 1410138	6002	0.037	-0.0217	No
49	ADAMTSL1	2970092	6188	0.032	-0.0313	No
50	THRAP1	2470121	6434	0.027	-0.0443	No
51	INSM1	3450671	6519	0.025	-0.0486	No
52	MYL1	2450707	6531	0.025	-0.0489	No
53	EDN1	1770047	6592	0.023	-0.0519	No
54	NPR3	1580239	6666	0.021	-0.0556	No
55	SH3BGR	840400	6784	0.019	-0.0617	No
56	CRH	3710301	6973	0.016	-0.0717	No
57	NCOA6	1780333 6450110	7155	0.012	-0.0814	No
58	FST	1110600	7183	0.012	-0.0827	No
59	NLGN3	2650463	7375	0.009	-0.0930	No
60	IL17B	6940711	7434	0.008	-0.0960	No
61	KCNK3	2690372	7469	0.007	-0.0978	No
62	MYH11	7100273	7968	-0.001	-0.1248	No
63	HOXD10	6100039	8242	-0.006	-0.1395	No
64	RASD2	3360010	8245	-0.006	-0.1396	No
65	MSX1	2650309	8255	-0.006	-0.1400	No
66	KCNMB1	4760139	8306	-0.006	-0.1426	No
67	MYL9	4210750 7050138	8443	-0.009	-0.1499	No
68	HOXA5	6840026	8445	-0.009	-0.1498	No
69	GAB2	1410280 2340520 4280040	8529	-0.010	-0.1542	No
70	TAGLN	6660280	8531	-0.010	-0.1542	No
71	DIXDC1	6980435	8569	-0.011	-0.1560	No
72	MYO1E	3140504	9122	-0.020	-0.1857	No
73	EGR4	3120750	9184	-0.021	-0.1888	No
74	ACTA1	840538	9285	-0.023	-0.1939	No
75	ASPA	3290400	9578	-0.028	-0.2095	No
76	LPP	1660541	10461	-0.046	-0.2567	No
77	NKX2-2	4150731	10656	-0.050	-0.2667	No
78	KCNA1	2030594	10718	-0.052	-0.2694	No
79	CALN1	3610722	10720	-0.052	-0.2689	No
80	CNN1	510707	10741	-0.052	-0.2694	No
81	NR4A1	6290161	10821	-0.054	-0.2730	No
82	NPAS2	770670	10825	-0.054	-0.2726	No
83	BNC2	4810603	10897	-0.056	-0.2758	No
84	HOXC5	1580017	10899	-0.056	-0.2752	No
85	IER2	2030008	10975	-0.058	-0.2786	No
86	DSTN	3140592	11071	-0.061	-0.2830	No
87	TANK	1090020 2060458 2370400	11076	-0.061	-0.2826	No
88	ABR	610079 1170609 3610195 5670050	11331	-0.068	-0.2956	No
89	CALD1	1770129 1940397	11403	-0.070	-0.2986	No
90	TNNC1	1990575	11645	-0.077	-0.3108	No
91	RASSF2	2480079 5720546	11794	-0.083	-0.3179	No
92	CACNA1B	1740010 5360593	11890	-0.086	-0.3220	No
93	PODN	3710068	11899	-0.087	-0.3215	No
94	TMOD1	3850100	12119	-0.095	-0.3323	No
95	MYO1B	770372	12152	-0.097	-0.3329	No
96	PPARG	1990168 2680603 6130632	12221	-0.100	-0.3355	No
97	TADA3L	4210070 5720088 6660333	12236	-0.100	-0.3351	No
98	HOXB5	2900538	12257	-0.101	-0.3350	No
99	RIMS1	5670022	12377	-0.107	-0.3402	No
100	DMD	1740041 3990332	12380	-0.107	-0.3391	No
101	HOXA3	3610632 6020358	12646	-0.121	-0.3521	No
102	DLL1	1770377	12872	-0.134	-0.3628	No
103	CTGF	4540577	12887	-0.135	-0.3620	No
104	COL23A1	2030358	12919	-0.137	-0.3621	No
105	RSU1	4850372	12932	-0.138	-0.3612	No
106	SRD5A2	6840433	12982	-0.141	-0.3622	No
107	MYLK	4010600 7000364	13035	-0.144	-0.3634	No
108	ITGB1BP2	6200129	13080	-0.148	-0.3641	No
109	JPH2	940041 5860026	13108	-0.150	-0.3639	No
110	STAT5B	6200026	13123	-0.151	-0.3629	No
111	FOXP2	3520561 4150372 4760524	13179	-0.155	-0.3641	No
112	PPAP2B	3190397 4730280	13206	-0.156	-0.3637	No
113	TGFB1I1	2060288 6550450	13285	-0.163	-0.3661	No
114	CITED2	5670114 5130088	13832	-0.213	-0.3933	No
115	ACTG2	4780180	13871	-0.217	-0.3929	No
116	ASPH	360722 1940039 2100066 2340121 2650113 2810064 2970008 3140040 3800750 4210014 4280133 4590035 4760433 6370671 6940338	13936	-0.224	-0.3938	No
117	PLCB3	4670402	13955	-0.227	-0.3922	No
118	FOXE3	6900102	14018	-0.234	-0.3929	No
119	SRF	70139 2320039	14038	-0.235	-0.3912	No
120	LRRTM4	5910100	14112	-0.243	-0.3924	No
121	MRGPRF	4780746	14252	-0.264	-0.3969	No
122	CX3CL1	3990707	14317	-0.272	-0.3973	No
123	DUSP6	5910286 7100070	14628	-0.323	-0.4104	No
124	MAP1A	4920576	14671	-0.329	-0.4089	No
125	FGF8	6350504	14763	-0.346	-0.4099	No
126	DVL3	360156 5390075	14939	-0.380	-0.4151	Yes
127	ELAVL4	50735 3360086 5220167	14942	-0.381	-0.4109	Yes
128	NPPA	6550328	14948	-0.382	-0.4068	Yes
129	FOS	1850315	14971	-0.386	-0.4036	Yes
130	NR2F1	4120528 360402	14973	-0.386	-0.3992	Yes
131	TAF5L	5690152	15178	-0.430	-0.4054	Yes
132	ACTB	1660736 2030204 2060215 5050047	15190	-0.433	-0.4010	Yes
133	EGR3	6940128	15198	-0.434	-0.3965	Yes
134	TPM2	520735 3870390	15310	-0.461	-0.3972	Yes
135	JUNB	4230048	15452	-0.504	-0.3991	Yes
136	SLC4A3	360603 4730239 6380347	15538	-0.535	-0.3976	Yes
137	POU3F4	870274	15540	-0.535	-0.3916	Yes
138	CFL2	380239 6200368	15581	-0.551	-0.3874	Yes
139	IHPK1	1340053	15889	-0.661	-0.3965	Yes
140	SGK	1400131 2480056	15969	-0.698	-0.3929	Yes
141	SERPINH1	6130014	16061	-0.742	-0.3893	Yes
142	FGFRL1	6370047	16069	-0.745	-0.3812	Yes
143	ANXA6	2190014	16137	-0.771	-0.3761	Yes
144	TLE3	580040 4730121	16160	-0.780	-0.3684	Yes
145	RHOJ	6660176	16164	-0.781	-0.3596	Yes
146	RUNDC1	2450037	16247	-0.824	-0.3547	Yes
147	EMILIN2	70253	16321	-0.857	-0.3488	Yes
148	TAZ	7100193	16586	-0.983	-0.3519	Yes
149	PFN1	6130132	16915	-1.144	-0.3567	Yes
150	VASP	7050500	16921	-1.147	-0.3439	Yes
151	SLC35A2	6770156	16929	-1.153	-0.3311	Yes
152	ESRRA	6550242	17094	-1.257	-0.3256	Yes
153	H2AFX	3520082	17204	-1.332	-0.3164	Yes
154	CKM	1450524	17235	-1.346	-0.3026	Yes
155	EEF1B2	4850400 6130161	17418	-1.472	-0.2957	Yes
156	SERTAD4	130593	17424	-1.476	-0.2792	Yes
157	GRK6	1500053	17717	-1.715	-0.2754	Yes
158	TPM1	130673	17733	-1.728	-0.2565	Yes
159	NPM3	3610300	17751	-1.742	-0.2376	Yes
160	CSRP1	2810403	17891	-1.880	-0.2237	Yes
161	EGR1	4610347	17946	-1.942	-0.2044	Yes
162	BLOC1S1	130341 3940717	17951	-1.953	-0.1824	Yes
163	MUS81	6660184	17964	-1.968	-0.1606	Yes
164	MYL6	60563 6100152	18078	-2.094	-0.1428	Yes
165	AGRP	1990082	18178	-2.207	-0.1230	Yes
166	ARPC4	2900056	18417	-2.722	-0.1049	Yes
167	PADI2	2940092 6420136	18499	-2.975	-0.0753	Yes
168	FLNA	5390193	18554	-3.307	-0.0406	Yes
169	MAPKAPK2	2850500	18590	-3.846	0.0014	Yes