Details for gene set V$E12

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch_repos
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#wtNotch_versus_truncNotch_repos
Upregulated in class	truncNotch
GeneSet	V$E12_Q6
Enrichment Score (ES)	-0.44777986
Normalized Enrichment Score (NES)	-1.3121161
Nominal p-value	0.022889843
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	NEDD4L	6380368	105	2.841	0.0243	No
2	RRAGC	5910348	212	2.517	0.0452	No
3	EGLN1	2480180 3120253 6110195	361	2.198	0.0604	No
4	OSR1	1500025	710	1.738	0.0599	No
5	RUNX1	3840711	910	1.531	0.0652	No
6	PLAGL2	1770148	1044	1.390	0.0727	No
7	SLC23A2	6660722	1054	1.380	0.0868	No
8	NUP88	2510044 6760180	1205	1.238	0.0918	No
9	MFNG	1770242 4280348	1468	1.029	0.0884	No
10	TPM3	670600 3170296 5670167 6650471	1548	0.998	0.0947	No
11	CFL1	2340735	1650	0.941	0.0991	No
12	LRP10	1580128	1727	0.890	0.1044	No
13	HMGN2	3140091	1900	0.789	0.1034	No
14	GRB2	6650398	2049	0.690	0.1027	No
15	LNX2	3130025	2169	0.636	0.1030	No
16	WNT6	4570364	2225	0.610	0.1064	No
17	SORT1	1850242 2320632 3870537	2234	0.608	0.1124	No
18	NTRK3	4050687 4070167 4610026 6100484	2582	0.477	0.0986	No
19	TGFB3	1070041	2702	0.438	0.0968	No
20	PACSIN3	4540369 4540400 5360037 6940129	2921	0.367	0.0889	No
21	EYA3	1580195 6510632	2980	0.348	0.0894	No
22	CAMK2A	1740333 1940112 4150292	3064	0.322	0.0883	No
23	CAMK1D	1660100 2350309	3375	0.251	0.0741	No
24	RIN1	510593	3421	0.241	0.0742	No
25	ADAM12	3390132 4070347	3511	0.222	0.0718	No
26	TRIM23	580168 6510672	3521	0.219	0.0736	No
27	WDR20	1240373	3796	0.174	0.0606	No
28	EIF2C1	6900551	3843	0.168	0.0599	No
29	CDH5	5340487	3980	0.150	0.0541	No
30	CNNM2	2650100	4018	0.145	0.0536	No
31	SSH2	360056	4039	0.142	0.0540	No
32	ASB14	5860427	4192	0.128	0.0471	No
33	TNFAIP1	6940593	4336	0.115	0.0406	No
34	CHRDL1	1580037 6380204	4354	0.114	0.0409	No
35	COL4A4	1050541	4482	0.103	0.0351	No
36	ITGA6	3830129	4521	0.100	0.0341	No
37	ELMO1	110338 1190451 1580148 1850609 2350706 2370369 2450129 3840113 4150184 4280079 6290066 6380435 6770494 7100180	4701	0.089	0.0253	No
38	SIM1	1770332	4763	0.085	0.0229	No
39	NTRK2	6220463	4806	0.083	0.0215	No
40	RAB26	5910025	4827	0.082	0.0213	No
41	PIM2	840136 5720692 7100577	4931	0.076	0.0165	No
42	KCNN3	6520600 6420138	5078	0.069	0.0093	No
43	SOX17	5270551	5128	0.067	0.0073	No
44	HR	2690095 6200300	5136	0.067	0.0077	No
45	FUT8	1340068 2340056	5180	0.065	0.0060	No
46	DSCAM	1780050 2450731 2810438	5251	0.062	0.0029	No
47	KLHL13	6590731	5319	0.059	-0.0001	No
48	RAPGEF4	6100563	5405	0.056	-0.0041	No
49	NEGR1	1940731 5130170	5494	0.053	-0.0084	No
50	WTAP	4010176	5624	0.048	-0.0148	No
51	ANKRD2	6590427	5776	0.043	-0.0226	No
52	PCDH15	7000438	5890	0.040	-0.0283	No
53	TCF2	870338 5050632	5933	0.039	-0.0302	No
54	GRIA1	1340152 3780750 4920440	5952	0.038	-0.0307	No
55	UNC13B	130735	5955	0.038	-0.0304	No
56	MTSS1	780435 2370114	6048	0.035	-0.0351	No
57	MYH14	4010017	6049	0.035	-0.0347	No
58	GFAP	2060092	6081	0.035	-0.0360	No
59	TREX2	4920707	6528	0.025	-0.0599	No
60	LAMA5	2680722	6538	0.024	-0.0601	No
61	NPEPPS	2630731	6555	0.024	-0.0608	No
62	COL4A3	5910075	6599	0.023	-0.0629	No
63	NBL1	2480021	6726	0.020	-0.0695	No
64	HIF3A	2630053 2680102 6450364	6848	0.018	-0.0758	No
65	AP1S2	780279 4280707	6958	0.016	-0.0816	No
66	SLC12A5	1980692	6959	0.016	-0.0814	No
67	NHLH1	6100452	7191	0.012	-0.0938	No
68	SORCS2	6350520	7239	0.011	-0.0963	No
69	FGF11	840292	7296	0.010	-0.0992	No
70	BMP6	2100128	7329	0.009	-0.1008	No
71	PTPRJ	4010707	7634	0.004	-0.1173	No
72	CCNL2	6520167	7961	-0.001	-0.1349	No
73	KCNB1	3610035	8065	-0.003	-0.1405	No
74	PPARA	2060026	8143	-0.004	-0.1446	No
75	FOXI1	3710095 6620195	8376	-0.008	-0.1571	No
76	CHRND	840403 2260670	8517	-0.010	-0.1646	No
77	MTUS1	780348 4920609	8643	-0.012	-0.1713	No
78	ARVCF	2190537	8662	-0.013	-0.1721	No
79	SOST	1170195	8799	-0.015	-0.1793	No
80	SFTPC	3290133	8897	-0.016	-0.1844	No
81	ARHGEF12	3990195	9001	-0.018	-0.1898	No
82	NFATC4	2470735	9158	-0.021	-0.1980	No
83	GPM6B	6220458	9490	-0.027	-0.2157	No
84	GPR37	2320093	9511	-0.027	-0.2165	No
85	CORO2B	2340035 4850390	9539	-0.027	-0.2177	No
86	DLL3	4010093	9542	-0.027	-0.2175	No
87	GATA2	6590280	9668	-0.029	-0.2240	No
88	DOC2A	6020121	9781	-0.032	-0.2297	No
89	ZNF205	6900022	9981	-0.036	-0.2401	No
90	CPA4	3610100	10055	-0.037	-0.2437	No
91	GDPD2	7000040	10236	-0.041	-0.2530	No
92	CENTG3	2470079 4610092 5050170	10291	-0.042	-0.2555	No
93	ALDH1A2	2320301	10391	-0.044	-0.2604	No
94	RTN4RL2	6450609	10525	-0.047	-0.2671	No
95	ODC1	5670168	10578	-0.048	-0.2694	No
96	ROBO3	6550408	10668	-0.051	-0.2737	No
97	PPP1R9B	3130619	10678	-0.051	-0.2737	No
98	CALN1	3610722	10720	-0.052	-0.2754	No
99	NR4A1	6290161	10821	-0.054	-0.2802	No
100	MYOZ3	1990138	10909	-0.056	-0.2843	No
101	ANK2	6510546	10979	-0.058	-0.2875	No
102	HSD11B2	5900053	10987	-0.058	-0.2872	No
103	SLC24A3	5080707	11298	-0.067	-0.3033	No
104	CPZ	70193	11301	-0.067	-0.3027	No
105	GJB2	5900609 6200487	11343	-0.068	-0.3042	No
106	IRX6	4590025	11432	-0.071	-0.3083	No
107	RASSF2	2480079 5720546	11794	-0.083	-0.3270	No
108	MT3	1450537	11878	-0.086	-0.3306	No
109	KCNK12	4070072	11886	-0.086	-0.3300	No
110	CHST9	4560092	11963	-0.089	-0.3332	No
111	CYP26A1	380022 2690600	12092	-0.094	-0.3391	No
112	CALB1	460070	12290	-0.103	-0.3487	No
113	POU2F3	2030601	12520	-0.114	-0.3600	No
114	FSCN2	1230039	12543	-0.115	-0.3599	No
115	TEAD4	1850239 6380519	12691	-0.123	-0.3666	No
116	DLL1	1770377	12872	-0.134	-0.3749	No
117	DNMT3A	4050068 4810717	13051	-0.146	-0.3831	No
118	CDH2	520435 2450451 2760025 6650477	13303	-0.164	-0.3949	No
119	NOL4	5050446 5360519	13386	-0.171	-0.3976	No
120	CANX	4760402	13571	-0.187	-0.4056	No
121	TNNC2	3840079	13653	-0.195	-0.4079	No
122	PRKAG2	2340100	13904	-0.220	-0.4191	No
123	PLCB3	4670402	13955	-0.227	-0.4195	No
124	HOXB7	4540706 4610358	14055	-0.237	-0.4223	No
125	GGN	1410528 4210082 5290170	14150	-0.249	-0.4248	No
126	FYN	2100468 4760520 4850687	14227	-0.260	-0.4262	No
127	MDGA1	1170139	14295	-0.269	-0.4270	No
128	BRUNOL4	4490452 5080451	14324	-0.272	-0.4256	No
129	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	14365	-0.276	-0.4248	No
130	DNAJB5	2900215	14367	-0.277	-0.4220	No
131	PHACTR3	3850435 5900445	14402	-0.282	-0.4208	No
132	LRP5	2100397 3170484	14478	-0.295	-0.4218	No
133	SCG2	5670438 130671	14758	-0.345	-0.4333	No
134	FGF8	6350504	14763	-0.346	-0.4298	No
135	POFUT1	1570458	14826	-0.354	-0.4295	No
136	USP2	1190292 1240253 4850035	14884	-0.367	-0.4287	No
137	SEMA3F	5420601 6770731	14908	-0.372	-0.4260	No
138	SYT4	5080193	15259	-0.448	-0.4402	No
139	ACTN3	3140541 6480598	15308	-0.461	-0.4380	No
140	CXCL14	840114 6450324	15393	-0.488	-0.4374	No
141	ITGB4	1740021 3840482	15586	-0.552	-0.4419	Yes
142	TNFRSF21	6380100	15633	-0.570	-0.4384	Yes
143	IGFBP5	2360592	15703	-0.595	-0.4359	Yes
144	INVS	4200632 6620528	15912	-0.671	-0.4401	Yes
145	SIPA1	5220687	15944	-0.687	-0.4345	Yes
146	CRELD1	2060253	16011	-0.718	-0.4305	Yes
147	STC2	4920601	16076	-0.749	-0.4260	Yes
148	DEF6	840593	16227	-0.811	-0.4256	Yes
149	GRB7	2100471	16420	-0.901	-0.4265	Yes
150	NEURL	5390538	16543	-0.962	-0.4229	Yes
151	ENO3	5270136	16556	-0.967	-0.4134	Yes
152	CORO2A	3840605 6620390	16575	-0.976	-0.4040	Yes
153	POLR1D	70082 450750 6040458	16599	-0.990	-0.3948	Yes
154	ARHGAP24	540278 4540025	16626	-0.996	-0.3857	Yes
155	RANGAP1	2320593 6650601	16802	-1.071	-0.3839	Yes
156	IGSF8	1580592	16989	-1.185	-0.3814	Yes
157	GPD1	2480095	17072	-1.243	-0.3728	Yes
158	CENTB1	2120093	17228	-1.343	-0.3670	Yes
159	CKM	1450524	17235	-1.346	-0.3531	Yes
160	TTC17	2470440	17281	-1.376	-0.3410	Yes
161	IGF2	6510020	17345	-1.422	-0.3294	Yes
162	ARID5A	2450133	17395	-1.460	-0.3166	Yes
163	PSTPIP1	3190156	17400	-1.463	-0.3014	Yes
164	HES6	540411 6550504	17603	-1.605	-0.2953	Yes
165	TNFSF13	2650170	17689	-1.692	-0.2821	Yes
166	HMGA1	6580408	17829	-1.825	-0.2703	Yes
167	SLC37A4	6400079	17914	-1.909	-0.2547	Yes
168	SELL	1190500	17943	-1.940	-0.2357	Yes
169	GFRA1	3610152	18155	-2.182	-0.2241	Yes
170	SASH1	4070270	18160	-2.190	-0.2012	Yes
171	SMAD3	6450671	18195	-2.238	-0.1794	Yes
172	PPOX	2640678 3850102	18264	-2.364	-0.1581	Yes
173	ELOVL1	2450019 4760138 5340685	18493	-2.949	-0.1393	Yes
174	HEYL	5860528	18552	-3.298	-0.1076	Yes
175	AIG1	2450091	18558	-3.339	-0.0726	Yes
176	PTK2B	4730411	18576	-3.507	-0.0365	Yes
177	GNAS	630441 1850373 4050152	18584	-3.653	0.0017	Yes