DatasetSet_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls
#wtNotch_versus_truncNotch.phenotype_truncNotch_versus_wtNotch.cls
#wtNotch_versus_truncNotch_repos
Phenotypephenotype_truncNotch_versus_wtNotch.cls#wtNotch_versus_truncNotch_repos
Upregulated in classwtNotch
GeneSetFLECHNER_KIDNEY_TRANSPLANT_WELL_UP
Enrichment Score (ES)0.5142688
Normalized Enrichment Score (NES)1.7388474
Nominal p-value0.0
FDR q-value0.051986203
FWER p-Value0.484
Table: GSEA Results Summary



Fig 1: Enrichment plot: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SMAD5570049744.4070.0146Yes
2MCL1166067264.2960.0290Yes
3SFRS12360440153.7750.0412Yes
4MARCKS7040450213.6740.0533Yes
5SC4MOL3140524313.5360.0646Yes
6WSB1870563493.2560.0746Yes
7PRKAR1A3450369663.0710.0841Yes
8PKM26520403 70500693.0580.0942Yes
9JTB6980400753.0020.1040Yes
10APLP23610037882.9310.1132Yes
11PPID2680707892.9250.1230Yes
12OGT2360131 46103331092.8290.1315Yes
13PSMD1456905931192.8060.1404Yes
14AP3S155700441322.7550.1490Yes
15RAB1A23706711402.7270.1578Yes
16ATP2A21090075 39902791642.6330.1654Yes
17PSMA445604271982.5390.1721Yes
18LEPROTL169001102002.5370.1806Yes
19CYCS20300722272.4900.1875Yes
20RPP1470400142342.4700.1955Yes
21IDH119900212512.4320.2027Yes
22NARS16607222632.4030.2102Yes
23HAT137100823012.3210.2160Yes
24H3F3B14103003122.2810.2231Yes
25AHCYL15406093282.2510.2298Yes
26SERINC166500203322.2430.2372Yes
27PDIA321202703502.2190.2437Yes
28RB159003383902.1520.2488Yes
29FNTA700594092.1200.2549Yes
30RALBP147806324302.0860.2608Yes
31PTP4A2870154 6040070 6130242 67602244382.0780.2674Yes
32SNX22470068 3360364 65100644442.0690.2741Yes
33NXF115703774542.0530.2805Yes
34PJA24305374702.0370.2865Yes
35ETF167700754802.0160.2928Yes
36MSN40600445141.9720.2976Yes
37HNRPK1190348 2060411 2570092 68405515281.9380.3034Yes
38TOPORS40605925351.9280.3095Yes
39PARG501395401.9170.3158Yes
40FBXO96420035 70501295761.8790.3201Yes
41MAPRE132900376201.8390.3240Yes
42ATG127801676551.7920.3281Yes
43HNRPC1570133 36101317151.7330.3307Yes
44PPP2CB55705937231.7240.3361Yes
45MORF4L264501337271.7160.3417Yes
46COPS51340722 50502157511.6990.3461Yes
47TOB141501387751.6710.3505Yes
48PTPRC130402 52901487881.6630.3554Yes
49H2AFZ14701688221.6280.3591Yes
50ABI128501528411.6120.3635Yes
51COPS230601428491.5960.3685Yes
52RNF626400358581.5880.3734Yes
53IFNGR16105778661.5830.3783Yes
54ACBD327601708781.5700.3830Yes
55CFDP170001129291.4960.3852Yes
56DDX3X21900209491.4840.3892Yes
57TXNDC15203989721.4570.3929Yes
58LAMP21230402 19803739841.4490.3971Yes
59SLC39A6610007210351.3960.3991Yes
60SH3BGRL206011010391.3940.4036Yes
61NDUFAF113011310661.3720.4068Yes
62OXCT1665027910791.3580.4107Yes
63ATP6V1A659024211031.3300.4139Yes
64ATP6V1B2406052811161.3190.4176Yes
65SFRS2IP730687 150037311171.3170.4221Yes
66ITM2A460576 421008611421.2890.4251Yes
67PEX3276010011431.2880.4294Yes
68RAC1481068711461.2830.4336Yes
69NDUFA55720239 655003511761.2610.4362Yes
70ETFA50347 5690040 637004411851.2550.4400Yes
71DCTD94016211921.2450.4439Yes
72RAB11A536007911971.2420.4478Yes
73PRDX4380003912131.2310.4511Yes
74EFHA14540167 461067112291.2210.4544Yes
75UGCG342005312301.2190.4585Yes
76STAT3460040 371034112781.1770.4599Yes
77AP3D1454013813551.1120.4594Yes
78CREBBP5690035 704005013781.0910.4619Yes
79TOMM70A78011413831.0850.4653Yes
80CRYZ1770110 2360484 481054114331.0470.4661Yes
81FECH2810605 3120088 492041114581.0370.4683Yes
82SYPL12680706 590040314721.0260.4710Yes
83HMGN1265002614781.0240.4742Yes
84FPGT539027314861.0190.4772Yes
85SNRPD3297005015201.0040.4788Yes
86DYNLT3557039815560.9950.4802Yes
87CRYAB481061916000.9750.4811Yes
88ASF1A705002016610.9310.4809Yes
89ANP32A510044 1580095 268003716860.9190.4827Yes
90RPS6KA3198070717110.9020.4844Yes
91SHFM1157011417730.8600.4840Yes
92TBL1X640052417770.8580.4867Yes
93DLD4150403 659034117910.8510.4888Yes
94KRIT12640500 4230435 473018417930.8510.4916Yes
95ARHGEF18212027919030.7850.4883Yes
96CDK2AP1234015619280.7700.4895Yes
97THEM2684074619330.7680.4919Yes
98SRP72399042719360.7670.4944Yes
99PROSC38048419440.7620.4965Yes
100HSBP1690068719500.7580.4988Yes
101CCNG2319009519890.7340.4992Yes
102TOP2B698030921090.6680.4949Yes
103NR1D22360014 454001421210.6610.4965Yes
104PSMC52760315 655002121430.6500.4975Yes
105COPA257051921510.6450.4993Yes
106PUM1613050021910.6270.4993Yes
107DICER154028621990.6230.5010Yes
108PRPF40A1190138 219016122140.6160.5023Yes
109MYH10264067322170.6140.5042Yes
110LGALS1645019322200.6130.5062Yes
111ARFGEF1676049422710.5930.5054Yes
112ELOVL5380017023160.5770.5049Yes
113PSMC6281002123560.5600.5047Yes
114MSH3677057523770.5520.5054Yes
115RECQL2510128 2640136 604068724220.5370.5048Yes
116F2R481018024230.5370.5066Yes
117PEX11B651015224410.5260.5075Yes
118PSME2485008624510.5230.5087Yes
119LASP11690528 2190341 642034124870.5110.5085Yes
120RBM32360739 570016725010.5060.5095Yes
121HSPA5513067125400.4920.5091Yes
122MINPP1870301 2230731 2940148 5860736 611011225410.4910.5107Yes
123ACADSB52017025490.4890.5120Yes
124TSPO110692 339045225510.4880.5135Yes
125STAT16510204 659055325750.4800.5139Yes
126STRN31450093 620068525980.4710.5143Yes
127PAPSS1134057627170.4340.5092No
128DYRK1A319018127500.4230.5089No
129IL6ST589004727960.4090.5078No
130ATF22260348 248044127970.4090.5092No
131CREB11500717 2230358 3610600 655060128980.3740.5049No
132AK3L1710060129220.3670.5049No
133SEC23A586003529500.3560.5046No
134ANXA5105037330110.3380.5025No
135PPP1R23710278 140072530370.3290.5022No
136PTGES32190440 268052430580.3230.5022No
137SLC25A134920072 569072231700.2930.4971No
138NAP1L12510593 5900215 5090470 450079 492028031750.2920.4978No
139NCOA3454019533040.2650.4917No
140ACSL4510020 1240041 3190050 4540500 557046333320.2580.4911No
141ALG84150497 4780500 629056333330.2580.4919No
142IL7R2060088 638050033510.2540.4918No
143CALU2680403 3520056 4610348 5720176 613012133700.2510.4917No
144SCFD13440692 622036933900.2490.4915No
145PICALM194028034290.2380.4902No
146FNDC3A2690097 329004434380.2360.4906No
147ANK31500161 2900435 4210154 640010034540.2330.4905No
148SAP18361009234580.2320.4911No
149DPM11240050 4810019 638039834610.2320.4918No
150SEC24B460717 306004034800.2290.4916No
151CLDN104070364 4590059 4920097 5080687 662027034880.2270.4920No
152COPB1539003735390.2150.4899No
153NEK4430731 2060010 700033336410.1990.4850No
154AMD1629012836420.1980.4857No
155MDH16660358 676073136660.1940.4851No
156CYP1B1476073537240.1850.4826No
157YWHAE531043537680.1780.4808No
158SEC22B319027837830.1760.4806No
159WEE1339007038840.1600.4757No
160RRAGA640060338870.1600.4761No
161TGFBR21780711 1980537 655039839140.1570.4752No
162CCT2169011340400.1420.4688No
163CAT428015240490.1410.4689No
164RPL22407007040540.1410.4691No
165QKI5220093 613004440720.1390.4686No
166NPTN620037340750.1380.4690No
167DDX5940021 2630338 344014840900.1370.4687No
168RBL2580446 140067041870.1280.4639No
169ARF4319066142020.1270.4635No
170LY751990358 459013642040.1270.4639No
171BIRC3655041142360.1250.4626No
172FRMD4B677073642800.1210.4606No
173RERE394027943240.1170.4587No
174NONO705001443550.1140.4574No
175PAPPA2589004144080.1090.4549No
176OAT54063244280.1070.4542No
177HNRPH22630040 572067144310.1070.4545No
178DHX960017 1170095 226001444330.1070.4548No
179ACTA260008 123008245200.1000.4504No
180HSD17B4478050445860.0960.4471No
181HMGB2264060346660.0910.4431No
182E2F350162 46018047480.0860.4389No
183SPARC169008647650.0850.4384No
184HMGN34210541 467057747990.0830.4368No
185TIAL14150048 651060548130.0820.4364No
186AZIN1345007048240.0820.4361No
187GALC2260685 4810161 637004049000.0770.4322No
188HIPK111019349340.0760.4307No
189CAPZA1314039049510.0750.4301No
190PSMD112340538 651005350280.0720.4261No
191USP3378004750420.0710.4256No
192ACTR2117033251880.0640.4179No
193PFN2730040 570002652910.0600.4125No
194NBN730538 2470619 478059452940.0600.4126No
195ARPC51740411 345030053480.0580.4099No
196CRYAA203016454290.0550.4057No
197MAOA1410039 461032454780.0530.4032No
198PFTK1178018155060.0520.4019No
199BAMBI665046356970.0450.3916No
200YWHAH1660133 281005357150.0450.3908No
201GSTO1665060059650.0380.3773No
202PPIB428045060370.0360.3735No
203NUP153700045260850.0350.3710No
204TEK635054161710.0330.3665No
205NEK7454002662700.0300.3612No
206TSPAN8174053863090.0300.3592No
207PLS3329008263650.0280.3563No
208THRAP1247012164340.0270.3526No
209PTPRD520008 312009764870.0260.3498No
210PTHR12640711 336064765640.0240.3457No
211AUH557015266330.0220.3421No
212PDCD6476023966390.0220.3419No
213GCH1670364 655035866770.0210.3399No
214CXCL12580546 4150750 457006867180.0200.3378No
215PAM529052867510.0200.3361No
216SERINC3203068567750.0190.3349No
217SH3BGR84040067840.0190.3345No
218RAN2260446 459064767890.0190.3344No
219GBAS676027868030.0190.3337No
220CASP45860047 665009368080.0190.3336No
221PIK3C2A604059369320.0160.3269No
222GDI2237006870700.0140.3194No
223NMI52027071710.0120.3139No
224CLASP2251013972040.0110.3122No
225DUSP31240129 684021572190.0110.3115No
226GPC3618073573530.0090.3042No
227STCH399005073580.0090.3040No
228SLC17A31780463 567043573740.0090.3032No
229MUT690017076130.0050.2901No
230SP3384033876430.0040.2886No
231SLC1A1520372 642005976500.0040.2883No
232BBOX12030538 237045277470.0020.2830No
233XPO154070777530.0020.2827No
234HIBCH415002577540.0020.2827No
235SLC16A4245050077910.0020.2808No
236ENPP2586054678310.0010.2786No
237MYH1171002737968-0.0010.2711No
238C1S840184 68401147990-0.0020.2700No
239CFLAR2320605 61804408009-0.0020.2690No
240PCK170003588121-0.0040.2629No
241PGM138404088317-0.0070.2522No
242MMP717804978492-0.0100.2427No
243RBP445401318532-0.0100.2406No
244UBE4A61005208544-0.0110.2400No
245BTBD31980041 2510577 3190053 42007468632-0.0120.2353No
246CX3CR116905778664-0.0130.2336No
247DYNLL155701138670-0.0130.2334No
248FABP450501148683-0.0130.2328No
249PGK11570494 6303008688-0.0130.2326No
250GBE121903688719-0.0140.2310No
251IGJ11705418721-0.0140.2310No
252FMO324803698729-0.0140.2307No
253GRB1069800828783-0.0150.2278No
254F2RL132902798792-0.0150.2274No
255TM9SF127603338927-0.0170.2201No
256ANXA761104468967-0.0180.2180No
257SLC34A14300448974-0.0180.2177No
258EVI2B10504658991-0.0180.2169No
259LUM54200799141-0.0210.2088No
260ACSL331401959151-0.0210.2084No
261CRYM39405289187-0.0210.2065No
262NDUFS126502539192-0.0220.2064No
263RFK10500709437-0.0260.1931No
264TRIM2430546 11702869482-0.0270.1907No
265UBQLN2430397 1170594 40701219498-0.0270.1900No
266EPS870502049559-0.0280.1868No
267FGL231707319711-0.0300.1786No
268CDC42BPA8406719751-0.0310.1766No
269NACA520326 58906739919-0.0350.1675No
270WDFY33610041 4560333 45702739973-0.0360.1647No
271GSN38301689994-0.0360.1637No
272HNRPR2320440 2900601 461000810044-0.0370.1612No
273CNBP257016110155-0.0390.1553No
274PRKCI542013910240-0.0410.1508No
275BNIP3314027010323-0.0430.1464No
276LEPR1340398 319032410351-0.0430.1451No
277PSMA35900047 704016110440-0.0450.1404No
278NRIP1319003910549-0.0480.1346No
279GBP178007510654-0.0500.1291No
280SLC22A2567052010700-0.0510.1268No
281KCNJ1570176 690075010756-0.0530.1239No
282TXNDC9158007910776-0.0530.1231No
283BRD81170463 2900075 4050397 659033210842-0.0550.1197No
284ANK2651054610979-0.0580.1124No
285CDH111230133 2100180 461011011003-0.0590.1113No
286C1D421009211032-0.0600.1100No
287UBXD2428009211055-0.0600.1090No
288ACSM36220170 2650706 590002011063-0.0600.1088No
289DSTN314059211071-0.0610.1086No
290TANK1090020 2060458 237040011076-0.0610.1086No
291TNFSF10317030011151-0.0620.1048No
292TNFRSF11B461044611209-0.0640.1018No
293UGT8371012811268-0.0660.0989No
294ABP11980609 6005611303-0.0670.0972No
295IFI16652060111383-0.0690.0931No
296PAFAH1B14230333 6420121 645006611397-0.0700.0926No
297PTPN122030309 6020725 6130746 629060911427-0.0710.0913No
298PSMB9698047111460-0.0720.0898No
299SFRP1698031511505-0.0730.0876No
300PLOD2336042711535-0.0740.0863No
301PHKB2060735 423048711568-0.0750.0847No
302SPARCL1199034811810-0.0830.0718No
303LRRFIP1870259 1050204 276037711813-0.0830.0720No
304ERBB3589037211912-0.0870.0669No
305HDGF5130114 5420066 659015211939-0.0880.0657No
306RHOBTB3401068711962-0.0890.0648No
307NUP501240519 2640390 2650471 473013311991-0.0900.0636No
308DNAJA11660010 2320358 684013612051-0.0920.0607No
309SDCBP460487 2190039 527044112131-0.0960.0566No
310MYO1B77037212152-0.0970.0559No
311TNPO1730092 226073512387-0.1070.0434No
312DPYSL22100427 3130112 570032412475-0.1120.0390No
313GULP12230725 2350039 557044612496-0.1130.0382No
314KNG16400576 677034712586-0.1180.0337No
315CREB3L2339048412612-0.1190.0328No
316CYB5R3430097 686040012660-0.1210.0306No
317CD443990072 4850671 5860411 6860148 705055112759-0.1270.0256No
318CD2AP194036912804-0.1300.0237No
319TUSC3169041112841-0.1320.0221No
320ABAT1940520 2690021 569016712845-0.1320.0224No
321BMP2K60541 557050412863-0.1330.0219No
322DST430026 1090035 2340577 3170068 3870112 4780519 6400167 6450358 704034712867-0.1330.0222No
323EIF3S5655028012983-0.1410.0164No
324FHL16027812986-0.1410.0167No
325UBE2N520369 290004713033-0.1440.0147No
326LRP21400204 329070613104-0.1500.0113No
327ACTG154021513115-0.1510.0113No
328ARID5B11040313120-0.1510.0116No
329ZMPSTE241090112 2030593 3780129 459004413170-0.1540.0094No
330SMURF2194016113405-0.172-0.0029No
331CDS1345039713478-0.179-0.0062No
332GALNT14070487 6130100 6250132 690004813493-0.180-0.0064No
333AHR456067113546-0.185-0.0086No
334MTMR4454052413560-0.186-0.0087No
335RPL36AL539002513566-0.187-0.0084No
336EIF3S2380711 870433 245061913662-0.195-0.0129No
337HSPA82120315 1050132 655074613775-0.208-0.0184No
338TSC22D11340739 604018113792-0.209-0.0186No
339NNT540253 1170471 5550092 676039713794-0.209-0.0179No
340PPP2R5C3310121 665067213818-0.212-0.0185No
341CITED25670114 513008813832-0.213-0.0185No
342TFPI1400288 555000813886-0.218-0.0207No
343PKN2940746 235016813997-0.232-0.0259No
344HADH1690341 383046514029-0.235-0.0268No
345VIM2043114039-0.235-0.0265No
346ANXA4140031514058-0.237-0.0267No
347CXCL9157067314178-0.253-0.0324No
348FYN2100468 4760520 485068714227-0.260-0.0342No
349MEGF9232009714298-0.269-0.0371No
350H2AFV2030577 522012914527-0.305-0.0486No
351COL1A238036414606-0.319-0.0518No
352CNIH2190484 508060914834-0.355-0.0631No
353COL3A16420273 662004414868-0.363-0.0637No
354RAB8A3610594 602073614878-0.365-0.0630No
355TXNL4A4120286 651024214992-0.391-0.0679No
356ADH56290100 638071115022-0.397-0.0681No
357EPS15420021515079-0.410-0.0698No
358SHOC21340064 157054615161-0.426-0.0729No
359USP14730377 405033315203-0.436-0.0737No
360PRKRA251060015391-0.487-0.0823No
361PARP14780446 640033815444-0.501-0.0835No
362SERPINE2281039015692-0.591-0.0951No
363SWAP702810577 2850739 513059415699-0.593-0.0934No
364HPGD677019215714-0.599-0.0921No
365ADH1A317042715715-0.600-0.0901No
366UQCRC152005315796-0.627-0.0924No
367VAT1105004015888-0.661-0.0952No
368ADD34150739 539060015895-0.663-0.0933No
369DEK1050451 456003716016-0.722-0.0975No
370COL4A1174057516097-0.756-0.0993No
371RAB7L143045016123-0.768-0.0981No
372IGF1R336049416249-0.825-0.1022No
373QDPR61001716253-0.827-0.0996No
374VCAM1290045016311-0.852-0.0999No
375TARDBP870390 235009316452-0.917-0.1045No
376LITAF694067116484-0.932-0.1031No
377HNRPDL1050102 1090181 536047116516-0.946-0.1016No
378RYK1500338 177007216553-0.967-0.1003No
379PPP2R1A206027916595-0.988-0.0993No
380IMMT870450 428043816611-0.993-0.0967No
381RHOA580142 5900131 534045016637-0.998-0.0948No
382CD9473004116660-1.005-0.0926No
383TBCA640009516703-1.022-0.0915No
384SELENBP1385057516747-1.041-0.0903No
385GTF3A234045116888-1.129-0.0942No
386MYH93120091 485029216930-1.154-0.0926No
387GNB2L1590052016946-1.162-0.0895No
388HNRPA2B11240619 6200161 6200494 698040816949-1.163-0.0858No
389PARK7456019516993-1.189-0.0841No
390TOMM34569010217001-1.198-0.0805No
391PLSCR1265030117049-1.231-0.0789No
392BCAP31119052017080-1.248-0.0764No
393ZMYND11630181 2570019 4850138 536004017097-1.258-0.0730No
394SCP2520092 1570692 2570066 620053717124-1.271-0.0702No
395ARMCX2232016717185-1.323-0.0691No
396DDOST268073117353-1.426-0.0734No
397SEPT61740739 522040217411-1.469-0.0716No
398DSCR14540048 622003917473-1.505-0.0699No
399IGFBP42680309 542044117474-1.506-0.0649No
400TAPBP198011017570-1.580-0.0648No
401SRRM1611002517668-1.674-0.0645No
402RBPMS399049417716-1.713-0.0613No
403COMT360687 510577 570009217759-1.747-0.0578No
404PPM1B380180 450154 361021517827-1.823-0.0553No
405EEF1D2320524 251034117897-1.888-0.0528No
406MRPS18B557008617927-1.922-0.0479No
407HERPUD1710044018010-2.016-0.0457No
408HSPE1317043818090-2.106-0.0429No
409MVP401025318106-2.125-0.0366No
410GOT1294046518118-2.138-0.0300No
411VTI1B3140364 651049718145-2.169-0.0242No
412SLC25A1405040218222-2.282-0.0207No
413KHK1090204 387020418246-2.330-0.0141No
414MRPS687016418251-2.339-0.0065No
415ARF6352002618261-2.3620.0009No
416CLU542007518405-2.6670.0020No
417SFRS250707 38059318457-2.8280.0087No
Table: GSEA details [plain text format]



Fig 2: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP: Random ES distribution   
Gene set null distribution of ES for FLECHNER_KIDNEY_TRANSPLANT_WELL_UP