Details for gene set V$HNF4

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #wtNotch_versus_absentNotch
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#wtNotch_versus_absentNotch
Upregulated in class	wtNotch
GeneSet	V$HNF4_01
Enrichment Score (ES)	0.39095727
Normalized Enrichment Score (NES)	1.2294132
Nominal p-value	0.041262135
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PAK4	1690152	68	2.254	0.0311	Yes
2	TRAF4	3060041 4920528 6980286	213	1.762	0.0506	Yes
3	USP52	3710215 6380133	392	1.453	0.0634	Yes
4	GCH1	670364 6550358	410	1.422	0.0844	Yes
5	TP53	6130707	432	1.390	0.1048	Yes
6	SLC26A6	4810575	573	1.242	0.1164	Yes
7	SESN3	110687	582	1.234	0.1350	Yes
8	SLC25A25	1230605	648	1.178	0.1497	Yes
9	ZSWIM3	1230563	684	1.148	0.1655	Yes
10	RASGRP2	2970333	719	1.125	0.1811	Yes
11	ETFDH	4670358	773	1.086	0.1950	Yes
12	PDZK1	2320128	778	1.082	0.2115	Yes
13	BAZ2A	730184	852	1.024	0.2234	Yes
14	LPL	1450735 2970706	856	1.023	0.2390	Yes
15	PDE8A	5080446	859	1.021	0.2547	Yes
16	RTN4	50725 630647 870097 870184	886	1.005	0.2688	Yes
17	LMAN2	430154	963	0.976	0.2798	Yes
18	TPI1	1500215 2100154	1061	0.922	0.2888	Yes
19	AP1B1	4290373	1189	0.849	0.2950	Yes
20	NTNG2	1770438 6380408	1223	0.833	0.3061	Yes
21	NIPSNAP1	6860138	1525	0.701	0.3006	Yes
22	CLCN2	1940021	1670	0.640	0.3026	Yes
23	TMPIT	3830538	1730	0.618	0.3090	Yes
24	GMPPB	4610538	1737	0.615	0.3182	Yes
25	PRKCSH	3360398	1746	0.610	0.3272	Yes
26	ADRB2	3290373	1756	0.609	0.3361	Yes
27	PDE3B	2030563	1905	0.562	0.3367	Yes
28	AGPAT1	610056	1942	0.551	0.3433	Yes
29	PKP4	3710400 5890097	2016	0.526	0.3475	Yes
30	RPS3A	2470086	2112	0.492	0.3499	Yes
31	NR1H3	4810215 5570292	2116	0.491	0.3574	Yes
32	PELO	3440706	2133	0.488	0.3640	Yes
33	MOV10	50673 430577 3870280	2174	0.478	0.3693	Yes
34	COL15A1	6840113	2210	0.468	0.3746	Yes
35	PDLIM7	4780136	2229	0.462	0.3808	Yes
36	NET1	2900707	2242	0.460	0.3872	Yes
37	SLC25A1	4050402	2300	0.442	0.3910	Yes
38	TOMM70A	780114	2471	0.394	0.3878	No
39	FKBP5	2190048	2581	0.368	0.3876	No
40	ASB7	520242 2450088 3990563 4280538	2854	0.313	0.3777	No
41	MARK2	7210608	2995	0.288	0.3745	No
42	CBX7	3940035	3035	0.282	0.3768	No
43	PRG4	5860156 6650086	3050	0.280	0.3804	No
44	PCBP4	6350722	3185	0.255	0.3770	No
45	LTB4R2	1990746	3226	0.249	0.3787	No
46	ZIC4	1500082	3386	0.226	0.3736	No
47	EEF1B2	4850400 6130161	3476	0.215	0.3721	No
48	SLC25A5	1980672	3495	0.213	0.3744	No
49	GLTP	3440603	3534	0.208	0.3755	No
50	ARFGEF2	5550500	3572	0.203	0.3767	No
51	PEX16	4560044	3728	0.186	0.3711	No
52	OBSCN	3610129	3848	0.175	0.3674	No
53	JMJD1C	940575 2120025	3954	0.165	0.3643	No
54	HSPD1	60097 2030451	3998	0.161	0.3644	No
55	LGALS4	2260215 3390338	4055	0.157	0.3638	No
56	POU5F1	450739 4560605	4302	0.136	0.3526	No
57	PRKAG1	6450091	4420	0.128	0.3482	No
58	F2	5720280	4430	0.127	0.3497	No
59	NEUROG2	5420278	4472	0.124	0.3494	No
60	LRRN1	3290154	4589	0.117	0.3449	No
61	MAP3K11	7000039	4629	0.115	0.3446	No
62	PCK1	7000358	4677	0.113	0.3438	No
63	HOXA9	610494 4730040 5130601	4718	0.111	0.3433	No
64	PTPRG	2650524 1340022	4784	0.106	0.3414	No
65	PAFAH2	3140451 5720593 6510014	4820	0.104	0.3411	No
66	CHRDL1	1580037 6380204	4833	0.104	0.3421	No
67	CREB1	1500717 2230358 3610600 6550601	5196	0.087	0.3238	No
68	CNTFR	4480092 6200064	5242	0.085	0.3226	No
69	KCNE1L	4670092	5324	0.081	0.3195	No
70	UBE2R2	1230504	5325	0.081	0.3208	No
71	SEC24C	6980707	5398	0.078	0.3181	No
72	PPP1R14D	2190168	5757	0.065	0.2997	No
73	PAX7	6860593	5924	0.060	0.2916	No
74	SYT6	2510280 3850128 4540064	5957	0.059	0.2908	No
75	PITX2	870537 2690139	6007	0.058	0.2890	No
76	FLNC	2360048 5050270	6135	0.055	0.2829	No
77	TRPC5	3390270	6202	0.053	0.2802	No
78	GPR124	510292 6290047	6230	0.052	0.2795	No
79	RARB	430139 1410138	6383	0.048	0.2720	No
80	FABP2	5050673	6506	0.045	0.2661	No
81	HOXA10	6110397 7100458	6508	0.045	0.2667	No
82	TCF2	870338 5050632	6522	0.045	0.2667	No
83	NRAP	1780433	6650	0.042	0.2605	No
84	SLC26A3	380750	6936	0.037	0.2456	No
85	SP8	4060576	7014	0.035	0.2419	No
86	TIMELESS	3710315	7225	0.031	0.2310	No
87	SS18	1940440 2900072 6900129	7307	0.029	0.2271	No
88	DNAJA2	2630253 6860358	7523	0.026	0.2158	No
89	C4A	360286 3830100 5220750 6420132	7795	0.021	0.2014	No
90	CRABP2	6940725	8148	0.016	0.1826	No
91	AKT2	3850541 3870519	8207	0.015	0.1797	No
92	KYNU	1410435	8369	0.012	0.1711	No
93	LRRC19	2680025	8428	0.012	0.1681	No
94	EIF4G1	4070446	8585	0.009	0.1598	No
95	GIPC2	3800463	8884	0.005	0.1437	No
96	GOLGA4	460300	9082	0.002	0.1331	No
97	MLLT6	3870168	9126	0.002	0.1308	No
98	GBE1	2190368	9129	0.002	0.1307	No
99	HOXD10	6100039	9137	0.002	0.1303	No
100	FGF10	730458 840706	9201	0.001	0.1269	No
101	WNT3	2360685	9398	-0.002	0.1163	No
102	INHBC	3780242	9478	-0.003	0.1121	No
103	PFKFB1	2370128	9496	-0.004	0.1112	No
104	PPARA	2060026	9595	-0.005	0.1060	No
105	SLC7A9	5420735 5700450	9626	-0.005	0.1044	No
106	TLK2	1170161	9725	-0.007	0.0992	No
107	CALB1	460070	9736	-0.007	0.0988	No
108	MYH10	2640673	9871	-0.008	0.0916	No
109	NGEF	3190538	9877	-0.009	0.0915	No
110	SNCB	3360133	9986	-0.010	0.0858	No
111	F13B	6220278	10042	-0.011	0.0830	No
112	RAB33A	6590195	10053	-0.011	0.0826	No
113	PPARGC1A	4670040	10233	-0.014	0.0731	No
114	PRDM16	4120541	10262	-0.014	0.0718	No
115	EDN3	2690722	10447	-0.017	0.0621	No
116	MUCDHL	5720056	10465	-0.017	0.0614	No
117	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	10522	-0.018	0.0587	No
118	SLC7A7	510601 2810152	10724	-0.021	0.0481	No
119	ERBB3	5890372	10799	-0.022	0.0444	No
120	HR	2690095 6200300	10905	-0.024	0.0391	No
121	NDUFS1	2650253	11020	-0.026	0.0333	No
122	PRDM1	3170347 3520301	11059	-0.026	0.0316	No
123	NKX2-2	4150731	11094	-0.027	0.0302	No
124	CDH6	4730541	11137	-0.028	0.0284	No
125	SLC34A1	430044	11234	-0.029	0.0236	No
126	ADAMTS19	2680739	11280	-0.030	0.0216	No
127	NR2C2	6100097	11455	-0.033	0.0127	No
128	CREB3L2	3390484	11552	-0.035	0.0080	No
129	HOXD3	6450154	11581	-0.035	0.0071	No
130	PGF	4810593	11737	-0.038	-0.0008	No
131	SERPINF1	7040367	11826	-0.040	-0.0049	No
132	SLC22A18	7050168	12107	-0.046	-0.0194	No
133	PKLR	1170400 2470114	12255	-0.050	-0.0266	No
134	PTBP2	1240398	12513	-0.056	-0.0397	No
135	CDX2	3850349	12828	-0.065	-0.0557	No
136	SPRY4	1570594	12895	-0.067	-0.0583	No
137	PRRX2	4260603	13059	-0.072	-0.0660	No
138	KLHL1	6350021	13242	-0.078	-0.0747	No
139	DUSP3	1240129 6840215	13300	-0.080	-0.0765	No
140	PRKCD	770592	13430	-0.086	-0.0822	No
141	SOX5	2370576 2900167 3190128 5050528	13552	-0.091	-0.0874	No
142	F10	3830450	13593	-0.092	-0.0881	No
143	TCF1	5390022	13745	-0.099	-0.0948	No
144	SEMA3B	5570563	13754	-0.099	-0.0937	No
145	TBX5	2900132 6370484	13980	-0.112	-0.1042	No
146	EPHA3	2190497 5080059	14035	-0.116	-0.1053	No
147	RBP2	2060097	14296	-0.133	-0.1174	No
148	LMX1B	1260561	14423	-0.141	-0.1220	No
149	RNF5	2760088	14574	-0.154	-0.1278	No
150	ARCN1	5820273	14605	-0.157	-0.1270	No
151	PAPLN	2510592	14657	-0.162	-0.1272	No
152	UBE4A	6100520	14754	-0.169	-0.1298	No
153	SLC23A3	6840152	14872	-0.183	-0.1333	No
154	PIP5K2A	5220497	14934	-0.191	-0.1337	No
155	SCT	2230348	14935	-0.191	-0.1307	No
156	SLC25A4	2360519	15006	-0.198	-0.1315	No
157	DAB2IP	3170064 6200441	15123	-0.212	-0.1345	No
158	SNAP25	360520	15235	-0.228	-0.1370	No
159	CACNB2	1500095 7330707	15276	-0.234	-0.1355	No
160	INSR	1190504	15366	-0.247	-0.1366	No
161	AKAP11	5050685	15447	-0.261	-0.1369	No
162	NEK6	3360687	15498	-0.272	-0.1354	No
163	PPARG	1990168 2680603 6130632	15518	-0.276	-0.1321	No
164	PABPN1	460519	15572	-0.285	-0.1306	No
165	SELM	450458	15760	-0.325	-0.1357	No
166	APOM	2340010	16011	-0.385	-0.1433	No
167	OVOL1	1690131	16101	-0.406	-0.1419	No
168	GATA4	1410215 2690609	16110	-0.409	-0.1360	No
169	G6PC	430093	16141	-0.416	-0.1312	No
170	SMYD5	6220025	16216	-0.435	-0.1285	No
171	PCTK1	4560079	16444	-0.506	-0.1330	No
172	LRP1	6270386	16492	-0.524	-0.1274	No
173	POLR2H	5890242	16552	-0.546	-0.1222	No
174	SFRS6	60224	16682	-0.590	-0.1201	No
175	RNF103	840452	16750	-0.618	-0.1142	No
176	LRFN4	5670368	17059	-0.751	-0.1193	No
177	SMOC1	840039	17120	-0.777	-0.1105	No
178	IGF1R	3360494	17142	-0.786	-0.0995	No
179	MRPS28	2230373	17248	-0.840	-0.0922	No
180	GPD1	2480095	17342	-0.886	-0.0836	No
181	RHOB	1500309	17468	-0.964	-0.0755	No
182	RBMS1	6400014	17654	-1.040	-0.0694	No
183	MAGMAS	580064 4920452	17767	-1.118	-0.0582	No
184	SATB1	5670154	18090	-1.381	-0.0544	No
185	BCL11B	2680673	18154	-1.464	-0.0352	No
186	HSPE1	3170438	18307	-1.669	-0.0176	No
187	SEPP1	450273	18506	-2.219	0.0060	No