Details for gene set V$ARNT

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #wtNotch_versus_absentNotch
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#wtNotch_versus_absentNotch
Upregulated in class	absentNotch
GeneSet	V$ARNT_01
Enrichment Score (ES)	-0.50478256
Normalized Enrichment Score (NES)	-1.5178047
Nominal p-value	0.0034722222
FDR q-value	0.17004761
FWER p-Value	0.837

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LEF1	2470082 7100288	214	1.758	0.0079	No
2	UBE1	4150139 7050463	304	1.584	0.0206	No
3	CHD4	5420059 6130338 6380717	406	1.424	0.0309	No
4	HOXB4	540131	566	1.246	0.0361	No
5	VARS2	1410017 3800114 4210270	644	1.182	0.0450	No
6	HMGN2	3140091	762	1.096	0.0508	No
7	ZFYVE26	6860152	810	1.060	0.0600	No
8	OPRS1	6130128 6290717	845	1.032	0.0696	No
9	TEF	1050050 3120397 4060487	879	1.008	0.0790	No
10	RTN4	50725 630647 870097 870184	886	1.005	0.0898	No
11	UBXD1	5130079 5390167	975	0.971	0.0958	No
12	PLCG2	5720008	1101	0.899	0.0990	No
13	VPS16	430064 3390041 6860301	1113	0.893	0.1083	No
14	ZCCHC7	6510592	1300	0.793	0.1070	No
15	IL15RA	2570270 3190711 6100091 6100270	1307	0.790	0.1154	No
16	CCAR1	3190092	1344	0.777	0.1221	No
17	PPP1R1B	5290403 5550324	1531	0.698	0.1197	No
18	AP1GBP1	2510372	1679	0.638	0.1188	No
19	PRPS1	6350129	2061	0.513	0.1039	No
20	TIMM9	2450484	2075	0.508	0.1088	No
21	NDUFA7	5900722	2220	0.467	0.1061	No
22	B3GALT6	50195	2241	0.460	0.1102	No
23	SMYD4	2640403	2392	0.415	0.1066	No
24	GTF2H1	2570746 2650148	2403	0.412	0.1106	No
25	MYST3	5270500	2720	0.339	0.0973	No
26	SNX2	2470068 3360364 6510064	2944	0.298	0.0885	No
27	NR5A1	70707	3063	0.278	0.0852	No
28	CRY2	6290722	3273	0.243	0.0765	No
29	ISGF3G	3190131 7100142	3293	0.240	0.0781	No
30	ATP6V1A	6590242	3325	0.234	0.0791	No
31	SLC35A5	2970670 4480546	3358	0.231	0.0799	No
32	SCYL1	5050717	3364	0.230	0.0822	No
33	RCL1	1980408 2680008 3800176	3373	0.229	0.0843	No
34	DUSP7	2940309	3538	0.207	0.0777	No
35	HNRPA1	4670398 5050687	3753	0.184	0.0681	No
36	COPS7A	3940458 7000022	3769	0.182	0.0693	No
37	ARMET	5130670	3816	0.178	0.0688	No
38	LZTS2	2260440	3879	0.172	0.0673	No
39	GATA5	430465	3902	0.169	0.0680	No
40	ESRRA	6550242	3953	0.165	0.0671	No
41	HSPD1	60097 2030451	3998	0.161	0.0665	No
42	PPRC1	1740441	4000	0.161	0.0683	No
43	EGLN2	540086	4060	0.156	0.0668	No
44	ARRDC3	4610390	4117	0.150	0.0654	No
45	TESK2	6520524	4155	0.147	0.0651	No
46	NEUROD1	3060619	4179	0.145	0.0654	No
47	QTRT1	1340162	4267	0.139	0.0622	No
48	NEUROG2	5420278	4472	0.124	0.0526	No
49	HOXB7	4540706 4610358	4493	0.123	0.0528	No
50	RBBP6	2320129	4707	0.111	0.0425	No
51	NRIP3	1340372	4783	0.106	0.0396	No
52	CNNM1	2190433	5143	0.089	0.0212	No
53	FGF14	2630390 3520075 6770048	5366	0.079	0.0100	No
54	RNF128	1230300 5670273	5449	0.077	0.0064	No
55	DVL2	6110162	5617	0.070	-0.0019	No
56	TAC1	7000195 380706	5645	0.069	-0.0026	No
57	BMP4	380113	5651	0.069	-0.0021	No
58	BDNF	2940128 3520368	5794	0.064	-0.0091	No
59	PPP1R3C	2640170	5849	0.062	-0.0113	No
60	SYT6	2510280 3850128 4540064	5957	0.059	-0.0165	No
61	MTUS1	780348 4920609	6159	0.054	-0.0268	No
62	HOXA7	5910152	6346	0.049	-0.0363	No
63	PHC3	4920332	6367	0.048	-0.0369	No
64	ELAVL3	2850014	6851	0.038	-0.0626	No
65	DNAJB9	460114	7648	0.024	-0.1055	No
66	BHLHB3	3450438	7842	0.020	-0.1158	No
67	UBE2B	4780497	8000	0.018	-0.1241	No
68	AMPD2	630093 1170070	8545	0.010	-0.1535	No
69	BMP2K	60541 5570504	8609	0.009	-0.1568	No
70	ILF3	940722 3190647 6520110	8663	0.008	-0.1596	No
71	ODC1	5670168	8725	0.007	-0.1628	No
72	EIF3S10	1190079 3840176	8954	0.004	-0.1751	No
73	SLCO1C1	5390494	9014	0.003	-0.1783	No
74	TRPM7	2510408	9040	0.003	-0.1796	No
75	ETV4	2450605	9060	0.003	-0.1806	No
76	HOXD10	6100039	9137	0.002	-0.1847	No
77	HOXB5	2900538	9344	-0.001	-0.1959	No
78	AP1S2	780279 4280707	9455	-0.003	-0.2018	No
79	CELSR3	5270731 7100082	9524	-0.004	-0.2054	No
80	XPO1	540707	9544	-0.004	-0.2064	No
81	AKAP10	2630504 5910577	9553	-0.004	-0.2068	No
82	SLC38A5	540093	9607	-0.005	-0.2096	No
83	DNMT3A	4050068 4810717	9722	-0.006	-0.2157	No
84	ZBTB10	4200132	9799	-0.007	-0.2198	No
85	PCDHA10	3830725	9989	-0.010	-0.2299	No
86	CBX5	3830072 6290167	10003	-0.010	-0.2305	No
87	SNX5	1570021 6860609	10400	-0.016	-0.2518	No
88	TBC1D5	5360619 6130603	10448	-0.017	-0.2542	No
89	ABCA1	6290156	10521	-0.018	-0.2579	No
90	PAX6	1190025	10695	-0.021	-0.2670	No
91	HOXA11	6980133	10835	-0.023	-0.2743	No
92	JAG1	3440390	10896	-0.024	-0.2773	No
93	NKX2-2	4150731	11094	-0.027	-0.2877	No
94	TBC1D15	870673	11200	-0.029	-0.2931	No
95	PICALM	1940280	11250	-0.030	-0.2954	No
96	ADAMTS19	2680739	11280	-0.030	-0.2966	No
97	POGK	5290315	11670	-0.037	-0.3173	No
98	FLT3	2640487	12105	-0.046	-0.3403	No
99	NPM1	4730427	12115	-0.046	-0.3403	No
100	FOXD3	6550156	12382	-0.053	-0.3541	No
101	SYT3	6380017	12429	-0.054	-0.3560	No
102	HOXA1	1190524 5420142	12476	-0.055	-0.3579	No
103	VLDLR	870722 3060047 5340452 6550131	12484	-0.055	-0.3577	No
104	TCEAL1	870577	12651	-0.059	-0.3660	No
105	SLC39A11	5860687	12914	-0.067	-0.3795	No
106	FOXF2	1240091	13007	-0.070	-0.3837	No
107	MBNL1	2640762 7100048	13161	-0.075	-0.3912	No
108	ETV1	70735 2940603 5080463	13625	-0.094	-0.4152	No
109	DSCAM	1780050 2450731 2810438	13725	-0.098	-0.4195	No
110	TGFB2	4920292	13877	-0.105	-0.4265	No
111	NPTX1	3710736	13962	-0.111	-0.4299	No
112	NEUROD2	5290097	14163	-0.123	-0.4393	No
113	SYNCRIP	1690195 3140113 4670279	14861	-0.182	-0.4751	No
114	PDGFB	3060440 6370008	15042	-0.203	-0.4826	No
115	SHMT1	5900132	15082	-0.207	-0.4825	No
116	SNAP25	360520	15235	-0.228	-0.4882	No
117	SIRT1	1190731	15314	-0.239	-0.4898	No
118	JPH1	610739	15320	-0.240	-0.4874	No
119	HIRA	4480609 5270167	15399	-0.252	-0.4888	No
120	LTBR	2450341	15541	-0.278	-0.4934	No
121	PABPN1	460519	15572	-0.285	-0.4918	No
122	MNT	4920575	15616	-0.295	-0.4909	No
123	RAB3IL1	380685 5420176	15752	-0.323	-0.4946	No
124	ARMCX3	3290309	15873	-0.349	-0.4973	No
125	PAK2	360438 7050068	15904	-0.358	-0.4949	No
126	EPC1	1570050 5290095 6900193	15993	-0.380	-0.4955	No
127	GATA4	1410215 2690609	16110	-0.409	-0.4972	No
128	TCERG1	2350551 4540397 5220746	16250	-0.445	-0.4999	Yes
129	COMMD8	5890358	16277	-0.455	-0.4962	Yes
130	PSME3	2810537	16351	-0.483	-0.4948	Yes
131	BRD2	1450300 5340484 6100605	16425	-0.502	-0.4932	Yes
132	AATF	5220575	16436	-0.505	-0.4882	Yes
133	MRPL40	2370215	16472	-0.515	-0.4844	Yes
134	RPA1	360452	16606	-0.563	-0.4853	Yes
135	EIF4E	1580403 70133 6380215	16676	-0.587	-0.4826	Yes
136	UBXD3	5050193	16804	-0.638	-0.4824	Yes
137	ATF7IP	2690176 6770021	16813	-0.642	-0.4757	Yes
138	RPL13A	2680519 5700142	16819	-0.644	-0.4688	Yes
139	CLN3	780368	16896	-0.678	-0.4654	Yes
140	HPS3	6650348	16981	-0.711	-0.4621	Yes
141	DCTN4	3390010 5550170	16989	-0.716	-0.4546	Yes
142	MAP2K6	1230056 2940204	17105	-0.770	-0.4523	Yes
143	ATP6V1C1	2690324 5220528	17305	-0.865	-0.4535	Yes
144	CD164	3830594	17441	-0.949	-0.4503	Yes
145	UTX	2900017 6770452	17446	-0.954	-0.4399	Yes
146	PPAT	1980019	17474	-0.966	-0.4307	Yes
147	CBARA1	360471	17489	-0.973	-0.4206	Yes
148	CSRP2BP	4570717 5550333	17534	-0.996	-0.4120	Yes
149	NIT1	1230338 3940671	17552	-0.999	-0.4019	Yes
150	FXYD6	3870164	17615	-1.020	-0.3939	Yes
151	PTMA	5570148	17683	-1.061	-0.3858	Yes
152	PAICS	610142	17735	-1.095	-0.3764	Yes
153	DDX3X	2190020	17759	-1.115	-0.3653	Yes
154	ARF6	3520026	17773	-1.123	-0.3536	Yes
155	COMMD3	2510259	17788	-1.142	-0.3417	Yes
156	ALDH6A1	1770746	17943	-1.249	-0.3362	Yes
157	EIF2C2	770451	17967	-1.267	-0.3234	Yes
158	RNF44	5910692	17985	-1.278	-0.3102	Yes
159	STMN1	1990717	18068	-1.364	-0.2995	Yes
160	AKAP12	1450739	18094	-1.383	-0.2855	Yes
161	ATP6V0B	2810112	18143	-1.444	-0.2721	Yes
162	BCL11B	2680673	18154	-1.464	-0.2564	Yes
163	UBE4B	780008 3610154	18163	-1.473	-0.2405	Yes
164	BOK	1170373 5860446	18242	-1.565	-0.2274	Yes
165	MTCH2	3780603 6620215	18248	-1.571	-0.2103	Yes
166	RHEBL1	2810576	18266	-1.591	-0.1936	Yes
167	NUDC	4780025	18392	-1.882	-0.1795	Yes
168	LAMP1	2470524	18413	-1.920	-0.1593	Yes
169	STX6	4850750 6770278	18434	-1.963	-0.1386	Yes
170	SNX8	3450315	18445	-2.000	-0.1170	Yes
171	EIF4B	5390563 5270577	18473	-2.090	-0.0953	Yes
172	KBTBD2	2320014	18488	-2.165	-0.0721	Yes
173	IFRD2	4150110	18502	-2.213	-0.0482	Yes
174	PER1	3290315	18540	-2.373	-0.0240	Yes
175	NR1D1	2360471 770746 6590204	18562	-2.528	0.0029	Yes