Details for gene set BASSO_GERMINAL_CENTER_CD40

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #truncNotch_versus_wtNotch
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#truncNotch_versus_wtNotch
Upregulated in class	truncNotch
GeneSet	BASSO_GERMINAL_CENTER_CD40_UP
Enrichment Score (ES)	0.60716563
Normalized Enrichment Score (NES)	1.6333139
Nominal p-value	0.0
FDR q-value	0.15555364
FWER p-Value	0.873

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	BATF	6760390	19	4.143	0.0629	Yes
2	NFKBIE	580390 2190086	22	4.000	0.1245	Yes
3	MAPKAPK2	2850500	26	3.846	0.1837	Yes
4	PTK2B	4730411	40	3.507	0.2371	Yes
5	PIK3CD	3060546	340	2.382	0.2577	Yes
6	LHFPL2	450020	371	2.327	0.2920	Yes
7	TAP1	4050047	372	2.324	0.3279	Yes
8	UNC119	360372	657	1.963	0.3428	Yes
9	RAC2	1580541	738	1.867	0.3673	Yes
10	IFI30	730309 2940500	855	1.748	0.3880	Yes
11	SYNGR2	4050332 4560091 6130348	1043	1.585	0.4024	Yes
12	CCR7	2060687	1076	1.557	0.4247	Yes
13	EBI2	6220722	1326	1.383	0.4326	Yes
14	PTP4A3	3780504 6400364	1347	1.371	0.4527	Yes
15	CCL4	50368 430047	1374	1.353	0.4721	Yes
16	IRF5	3360519	1606	1.203	0.4782	Yes
17	EHD1	3840731	1743	1.117	0.4881	Yes
18	NFKBIA	1570152	1757	1.101	0.5044	Yes
19	CAPG	770373	1793	1.079	0.5192	Yes
20	NFKB2	2320670	1817	1.069	0.5344	Yes
21	STK10	2760010 3940605	1997	0.995	0.5401	Yes
22	IER3	5860021	2014	0.990	0.5545	Yes
23	LITAF	6940671	2132	0.932	0.5626	Yes
24	STAT5A	2680458	2347	0.833	0.5639	Yes
25	GADD45B	2350408	2500	0.766	0.5675	Yes
26	CD83	4150242	2563	0.739	0.5756	Yes
27	ISGF3G	3190131 7100142	2649	0.696	0.5817	Yes
28	LAPTM5	5550372	2834	0.622	0.5814	Yes
29	TRIP10	460438	2910	0.596	0.5866	Yes
30	TMC6	60736 1230093 2100288 4850735	2922	0.592	0.5951	Yes
31	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	2962	0.579	0.6019	Yes
32	ADAM8	450347 5670609	3077	0.535	0.6040	Yes
33	JUNB	4230048	3164	0.504	0.6072	Yes
34	TNFAIP3	2900142	3560	0.405	0.5921	No
35	DDIT4	2570408	3564	0.404	0.5982	No
36	TNFAIP2	70438 1740215	3795	0.354	0.5912	No
37	HTR3A	3310180	4429	0.254	0.5610	No
38	SH2B3	4810451 4850128	4528	0.240	0.5594	No
39	CR2	2850332 6450397	4897	0.202	0.5427	No
40	CCL3	2810092	5023	0.190	0.5389	No
41	RGS1	4060347 4540181	5036	0.188	0.5411	No
42	MTMR4	4540524	5056	0.186	0.5430	No
43	ICOSLG	70128	5145	0.178	0.5410	No
44	ARID5B	110403	5496	0.151	0.5244	No
45	CD44	3990072 4850671 5860411 6860148 7050551	5857	0.127	0.5069	No
46	TCFL5	2190019	6180	0.110	0.4913	No
47	CD40	2760471 2940390 6220402 6220452	6358	0.101	0.4833	No
48	TNFSF9	1190408	6666	0.089	0.4681	No
49	LTA	1740088	6769	0.085	0.4639	No
50	MAP3K8	2940286	7203	0.070	0.4416	No
51	MEF2C	670025 780338	7314	0.067	0.4367	No
52	SNF1LK	6110403	8053	0.048	0.3976	No
53	PLXNC1	5860315	8437	0.040	0.3776	No
54	ARHGEF2	3360577	8524	0.038	0.3735	No
55	PLEK	1090039	8866	0.031	0.3556	No
56	NCF2	540129 2370441 2650133	9688	0.017	0.3116	No
57	MYB	1660494 5860451 6130706	9771	0.015	0.3074	No
58	TMSB4X	6620114	9838	0.014	0.3040	No
59	TRAF1	3440735	9843	0.014	0.3040	No
60	IRF4	610133	10268	0.007	0.2813	No
61	ELL2	6420091	10575	0.002	0.2648	No
62	CFLAR	2320605 6180440	10607	0.002	0.2632	No
63	ZFP36L1	2510138 4120048	10657	0.001	0.2605	No
64	CCL22	6380086	11269	-0.009	0.2277	No
65	PHACTR1	3190176 5670286	12198	-0.027	0.1781	No
66	LYN	6040600	13008	-0.048	0.1352	No
67	RXRA	3800471	14563	-0.141	0.0535	No
68	SLAMF1	580131 4920110	14809	-0.173	0.0429	No
69	DUSP2	2370184	15174	-0.235	0.0269	No
70	BLR1	1500300 5420017	15275	-0.256	0.0255	No
71	IL1B	2640364	15409	-0.286	0.0227	No
72	DTX2	4210041 7000008	15512	-0.312	0.0220	No
73	KCNN4	2680129	15643	-0.349	0.0204	No
74	TCEB3	5890156	15702	-0.368	0.0230	No
75	STAT1	6510204 6590553	16041	-0.480	0.0121	No
76	LGALS1	6450193	16396	-0.613	0.0025	No
77	TNF	6650603	16480	-0.652	0.0081	No
78	RAB27A	450019	16522	-0.673	0.0162	No
79	ICAM1	6980138	17164	-1.039	-0.0023	No
80	CHD1	4590048	17736	-1.565	-0.0090	No
81	HSP90B1	5670576	17831	-1.665	0.0117	No
82	TNFAIP8	2760551	18112	-1.986	0.0272	No