Details for gene set V$NERF

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch_repos
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#absentNotch_versus_wtNotch_repos
Upregulated in class	wtNotch
GeneSet	V$NERF_Q2
Enrichment Score (ES)	-0.41497043
Normalized Enrichment Score (NES)	-1.2860417
Nominal p-value	0.01511335
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	FCGR2B	780750	164	2.020	0.0146	No
2	HN1	3360156	234	1.852	0.0325	No
3	ARHGAP8	380333 5390487	244	1.806	0.0530	No
4	VCL	4120487	273	1.734	0.0717	No
5	LST1	5420372	288	1.714	0.0909	No
6	EXTL2	5050433	354	1.585	0.1058	No
7	ELOVL5	3800170	422	1.511	0.1198	No
8	SLCO2B1	3450019	571	1.338	0.1274	No
9	NFATC3	5050520	582	1.327	0.1423	No
10	FREQ	3140039 4060600 4560670	636	1.275	0.1543	No
11	HTF9C	3190048 4120132	764	1.188	0.1612	No
12	DIABLO	2360170	796	1.164	0.1731	No
13	NDUFS2	4850020 6200402	1131	0.970	0.1663	No
14	STARD8	1780047	1209	0.929	0.1729	No
15	SECISBP2	6520309	1331	0.856	0.1764	No
16	CALM2	6620463	1344	0.852	0.1856	No
17	SLC30A7	2230463	1349	0.848	0.1953	No
18	MAP2K6	1230056 2940204	1511	0.770	0.1955	No
19	GPR132	4150114	1555	0.752	0.2020	No
20	CDCA3	3940397	1640	0.709	0.2057	No
21	MYOHD1	1410520	1734	0.673	0.2085	No
22	FKBP10	1340706	1981	0.572	0.2018	No
23	DPP8	3120136	2068	0.545	0.2035	No
24	ITPKB	2900195 7100039	2100	0.533	0.2080	No
25	CD79B	1450066 3390358	2113	0.528	0.2135	No
26	TCF12	3610324 7000156	2257	0.484	0.2114	No
27	ARRB2	2060441	2371	0.443	0.2104	No
28	TOPORS	4060592	2373	0.443	0.2155	No
29	CAP1	2650278	2472	0.417	0.2151	No
30	ATP5H	670438	2566	0.394	0.2146	No
31	HYAL2	1500152	2695	0.361	0.2119	No
32	RPS3	1570017 2370170	2782	0.342	0.2112	No
33	CD79A	3450563	3289	0.242	0.1866	No
34	SLITRK6	7320739	3474	0.215	0.1791	No
35	FURIN	4120168	3599	0.199	0.1747	No
36	PCDH7	450398 4150040	3734	0.185	0.1696	No
37	UQCRH	4210463	3974	0.161	0.1585	No
38	FGFR2	4670601 5570402 6940377	4090	0.150	0.1541	No
39	CDK5	940348	4319	0.133	0.1432	No
40	SH3TC1	3120162	4396	0.127	0.1406	No
41	FXYD5	4060301 6590400	4398	0.127	0.1420	No
42	CENTD2	60408 2510156 6100494	4628	0.112	0.1309	No
43	ZNF23	1090537	4696	0.108	0.1285	No
44	UCHL5	540139 1690053	4819	0.101	0.1231	No
45	KCND1	6860278	5095	0.089	0.1092	No
46	TUSC3	1690411	5114	0.089	0.1093	No
47	PAK3	4210136	5602	0.071	0.0837	No
48	BCOR	1660452 3940053	5646	0.069	0.0822	No
49	MMRN2	1740047	5790	0.065	0.0752	No
50	STARD13	540722	5856	0.063	0.0724	No
51	KLF13	4670563	5870	0.062	0.0724	No
52	BTBD12	2940072	5955	0.059	0.0686	No
53	HOXB9	2640687	6181	0.054	0.0570	No
54	SHC3	2690398	6209	0.053	0.0562	No
55	ELK3	460377 1400762 3710497	6492	0.046	0.0414	No
56	LOXL3	4010168	6519	0.046	0.0405	No
57	ATOH8	4540204	6769	0.041	0.0275	No
58	CNTNAP1	6650132	6833	0.040	0.0246	No
59	CHD2	4070039	6889	0.038	0.0220	No
60	PTPRN	5900577	7245	0.031	0.0032	No
61	JAG1	3440390	7720	0.024	-0.0223	No
62	TRO	1980113	7775	0.023	-0.0249	No
63	NLK	2030010 2450041	7808	0.022	-0.0264	No
64	PAX6	1190025	7921	0.021	-0.0322	No
65	GOLGA7	6980121	8124	0.018	-0.0430	No
66	NRXN3	1400546 3360471	8337	0.014	-0.0543	No
67	TWIST1	5130619	8583	0.011	-0.0674	No
68	FCER1G	5550020	8594	0.011	-0.0679	No
69	EFNA1	3840672	8792	0.008	-0.0784	No
70	ACTR3	1400497	8811	0.007	-0.0793	No
71	CPNE8	7040039	8881	0.007	-0.0830	No
72	POU4F3	2690035	8956	0.005	-0.0869	No
73	GRM3	4540242	9214	0.002	-0.1009	No
74	NFIA	2760129 5860278	9224	0.002	-0.1013	No
75	SDCCAG8	1780687	9343	0.000	-0.1077	No
76	RHOV	5860100	9405	-0.001	-0.1110	No
77	TENC1	1980403 7050575	9817	-0.006	-0.1332	No
78	FOSL1	430021	9950	-0.008	-0.1403	No
79	ST7L	840735 2360576	10550	-0.017	-0.1725	No
80	UBTF	4210450 6840403	11033	-0.025	-0.1984	No
81	STAT5B	6200026	11319	-0.029	-0.2135	No
82	LSAMP	2810056 6550082	11458	-0.032	-0.2206	No
83	OLFML2A	5890039	11493	-0.033	-0.2221	No
84	DOK1	1050279 2680112 5220273	11547	-0.034	-0.2245	No
85	POU6F2	5270451	11847	-0.040	-0.2403	No
86	PLCB2	360132	12232	-0.048	-0.2605	No
87	CAPZA1	3140390	12321	-0.050	-0.2647	No
88	LYN	6040600	12550	-0.056	-0.2764	No
89	PITX2	870537 2690139	12609	-0.058	-0.2789	No
90	ROBO4	6040471 6650717	12714	-0.061	-0.2838	No
91	ADAMTS4	430435	12800	-0.063	-0.2877	No
92	GMFB	6590035	12870	-0.065	-0.2907	No
93	EGR3	6940128	12962	-0.069	-0.2948	No
94	BMP4	380113	12965	-0.069	-0.2941	No
95	HOXC4	1940193	13066	-0.073	-0.2987	No
96	CNNM1	2190433	13473	-0.089	-0.3197	No
97	PIGW	4810072	13699	-0.099	-0.3307	No
98	MPL	2360253	13779	-0.103	-0.3338	No
99	MDFI	6200041	13856	-0.108	-0.3366	No
100	RBBP7	430113 450450 2370309	13886	-0.110	-0.3369	No
101	NPY	3170138	14048	-0.119	-0.3443	No
102	CLIC1	110600	14147	-0.125	-0.3481	No
103	ERG	50154 1770739	14665	-0.166	-0.3742	No
104	SEMA4C	1980315	14668	-0.166	-0.3724	No
105	LRRFIP2	670575 730152 6590438	14766	-0.175	-0.3756	No
106	MID1	4070114 4760458	14877	-0.185	-0.3794	No
107	PEX16	4560044	14888	-0.186	-0.3778	No
108	PEX11B	6510152	14915	-0.189	-0.3770	No
109	FLT1	3830167 4920438	15051	-0.205	-0.3819	No
110	SALL1	5420020 7050195	15053	-0.205	-0.3796	No
111	NTRK3	4050687 4070167 4610026 6100484	15400	-0.251	-0.3954	No
112	DPP3	2680725 3780670	15432	-0.255	-0.3941	No
113	SPRED2	510138 540195	15466	-0.261	-0.3929	No
114	C1QTNF6	2030592	15490	-0.267	-0.3910	No
115	MAP4K1	4060692	15584	-0.284	-0.3928	No
116	LYPLA2	1500112	15613	-0.288	-0.3909	No
117	DDIT3	780373	15630	-0.290	-0.3884	No
118	ARHGDIB	4730433	15694	-0.301	-0.3883	No
119	SNCG	3120725	15914	-0.343	-0.3962	No
120	ROM1	3130685	16103	-0.383	-0.4019	No
121	GGTL3	1770288	16138	-0.392	-0.3992	No
122	LYL1	2900242	16430	-0.476	-0.4094	Yes
123	EBAG9	5090739 7330181	16435	-0.477	-0.4041	Yes
124	TLN1	6590411	16573	-0.517	-0.4055	Yes
125	RANBP1	430215 1090180	16580	-0.519	-0.3998	Yes
126	IKBKB	6840072	16623	-0.532	-0.3958	Yes
127	LAT	3170025	16657	-0.545	-0.3913	Yes
128	AGPAT1	610056	16674	-0.551	-0.3857	Yes
129	PIK3CG	5890110	16793	-0.589	-0.3853	Yes
130	RGS3	60670 540736 1340180 1500369 3390735 4010131 4610402 6380114	16834	-0.602	-0.3804	Yes
131	SLC4A2	2690114	16843	-0.604	-0.3738	Yes
132	USP5	4850017	16882	-0.616	-0.3687	Yes
133	TFRC	4050551	16889	-0.618	-0.3618	Yes
134	ATP1A1	5670451	16905	-0.623	-0.3554	Yes
135	TRAPPC3	2030176 6020609 6590373 6760019	16929	-0.633	-0.3493	Yes
136	TGIF2	3840364 4050520	16978	-0.655	-0.3442	Yes
137	MCTS1	6130133	17002	-0.666	-0.3377	Yes
138	CAMK1D	1660100 2350309	17007	-0.667	-0.3302	Yes
139	ZHX2	2900452	17036	-0.680	-0.3238	Yes
140	TMEM4	6220091	17315	-0.793	-0.3296	Yes
141	MAPK3	580161 4780035	17337	-0.803	-0.3214	Yes
142	ITPR3	4010632	17463	-0.873	-0.3180	Yes
143	CORO1A	3140609 3190020 3190037	17468	-0.875	-0.3080	Yes
144	PTPN6	4230128	17484	-0.885	-0.2985	Yes
145	LANCL1	1770079 6420670	17508	-0.896	-0.2893	Yes
146	STAT5A	2680458	17538	-0.913	-0.2803	Yes
147	SRPR	6590647 6370114	17542	-0.917	-0.2698	Yes
148	RPS6KA4	2190524	17588	-0.934	-0.2613	Yes
149	HCLS1	7100309	17599	-0.939	-0.2509	Yes
150	HIC1	2650142	17635	-0.963	-0.2416	Yes
151	RASA1	1240315	17747	-1.018	-0.2358	Yes
152	BAZ2A	730184	17764	-1.024	-0.2247	Yes
153	POLD4	2320082	17766	-1.024	-0.2128	Yes
154	JUNB	4230048	17821	-1.073	-0.2033	Yes
155	HMGN2	3140091	17854	-1.096	-0.1922	Yes
156	TPP2	3850093	17985	-1.190	-0.1854	Yes
157	PPP1R9B	3130619	18031	-1.227	-0.1736	Yes
158	FBS1	2570520	18069	-1.269	-0.1608	Yes
159	CREB3	5220408	18188	-1.396	-0.1509	Yes
160	DEF6	840593	18292	-1.555	-0.1384	Yes
161	HMGA1	6580408	18323	-1.609	-0.1213	Yes
162	FGR	3780047	18351	-1.662	-0.1034	Yes
163	UBE2L3	1690707 5900242	18394	-1.745	-0.0853	Yes
164	FBXO36	1410086	18460	-1.921	-0.0665	Yes
165	ZFPM1	6760093	18479	-2.005	-0.0441	Yes
166	SH2D2A	2970594	18490	-2.034	-0.0209	Yes
167	RASAL1	3710112	18559	-2.379	0.0031	Yes