Details for gene set V$HNF4

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch_repos
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#absentNotch_versus_wtNotch_repos
Upregulated in class	wtNotch
GeneSet	V$HNF4_01
Enrichment Score (ES)	-0.39095718
Normalized Enrichment Score (NES)	-1.2249161
Nominal p-value	0.053140096
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SEPP1	450273	110	2.219	0.0283	No
2	HSPE1	3170438	309	1.669	0.0434	No
3	BCL11B	2680673	462	1.464	0.0578	No
4	SATB1	5670154	526	1.381	0.0757	No
5	MAGMAS	580064 4920452	849	1.118	0.0755	No
6	RBMS1	6400014	962	1.040	0.0855	No
7	RHOB	1500309	1148	0.964	0.0904	No
8	GPD1	2480095	1274	0.886	0.0973	No
9	MRPS28	2230373	1368	0.840	0.1052	No
10	IGF1R	3360494	1474	0.786	0.1117	No
11	SMOC1	840039	1496	0.777	0.1225	No
12	LRFN4	5670368	1557	0.751	0.1309	No
13	RNF103	840452	1866	0.618	0.1237	No
14	SFRS6	60224	1934	0.590	0.1292	No
15	POLR2H	5890242	2064	0.546	0.1306	No
16	LRP1	6270386	2124	0.524	0.1355	No
17	PCTK1	4560079	2172	0.506	0.1408	No
18	SMYD5	6220025	2400	0.435	0.1352	No
19	G6PC	430093	2475	0.416	0.1376	No
20	GATA4	1410215 2690609	2506	0.409	0.1423	No
21	OVOL1	1690131	2515	0.406	0.1482	No
22	APOM	2340010	2605	0.385	0.1493	No
23	SELM	450458	2856	0.325	0.1408	No
24	PABPN1	460519	3044	0.285	0.1350	No
25	PPARG	1990168 2680603 6130632	3098	0.276	0.1364	No
26	NEK6	3360687	3118	0.272	0.1396	No
27	AKAP11	5050685	3169	0.261	0.1409	No
28	INSR	1190504	3250	0.247	0.1404	No
29	CACNB2	1500095 7330707	3340	0.234	0.1392	No
30	SNAP25	360520	3381	0.228	0.1405	No
31	DAB2IP	3170064 6200441	3493	0.212	0.1378	No
32	SLC25A4	2360519	3610	0.198	0.1345	No
33	SCT	2230348	3681	0.191	0.1337	No
34	PIP5K2A	5220497	3682	0.191	0.1367	No
35	SLC23A3	6840152	3744	0.183	0.1362	No
36	UBE4A	6100520	3862	0.169	0.1324	No
37	PAPLN	2510592	3959	0.162	0.1297	No
38	ARCN1	5820273	4011	0.157	0.1294	No
39	RNF5	2760088	4042	0.154	0.1301	No
40	LMX1B	1260561	4193	0.141	0.1242	No
41	RBP2	2060097	4320	0.133	0.1194	No
42	EPHA3	2190497 5080059	4581	0.116	0.1071	No
43	TBX5	2900132 6370484	4636	0.112	0.1059	No
44	SEMA3B	5570563	4862	0.099	0.0952	No
45	TCF1	5390022	4871	0.099	0.0963	No
46	F10	3830450	5023	0.092	0.0895	No
47	SOX5	2370576 2900167 3190128 5050528	5064	0.091	0.0888	No
48	PRKCD	770592	5186	0.086	0.0835	No
49	DUSP3	1240129 6840215	5316	0.080	0.0778	No
50	KLHL1	6350021	5374	0.078	0.0759	No
51	PRRX2	4260603	5557	0.072	0.0671	No
52	SPRY4	1570594	5721	0.067	0.0593	No
53	CDX2	3850349	5788	0.065	0.0567	No
54	PTBP2	1240398	6103	0.056	0.0405	No
55	PKLR	1170400 2470114	6361	0.050	0.0274	No
56	SLC22A18	7050168	6509	0.046	0.0201	No
57	SERPINF1	7040367	6790	0.040	0.0055	No
58	PGF	4810593	6879	0.038	0.0014	No
59	HOXD3	6450154	7035	0.035	-0.0065	No
60	CREB3L2	3390484	7064	0.035	-0.0075	No
61	NR2C2	6100097	7161	0.033	-0.0122	No
62	ADAMTS19	2680739	7336	0.030	-0.0212	No
63	SLC34A1	430044	7382	0.029	-0.0232	No
64	CDH6	4730541	7479	0.028	-0.0279	No
65	NKX2-2	4150731	7522	0.027	-0.0298	No
66	PRDM1	3170347 3520301	7557	0.026	-0.0312	No
67	NDUFS1	2650253	7596	0.026	-0.0329	No
68	HR	2690095 6200300	7711	0.024	-0.0387	No
69	ERBB3	5890372	7817	0.022	-0.0441	No
70	SLC7A7	510601 2810152	7892	0.021	-0.0478	No
71	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	8094	0.018	-0.0584	No
72	MUCDHL	5720056	8151	0.017	-0.0612	No
73	EDN3	2690722	8169	0.017	-0.0618	No
74	PRDM16	4120541	8354	0.014	-0.0716	No
75	PPARGC1A	4670040	8383	0.014	-0.0729	No
76	RAB33A	6590195	8563	0.011	-0.0824	No
77	F13B	6220278	8574	0.011	-0.0828	No
78	SNCB	3360133	8630	0.010	-0.0856	No
79	NGEF	3190538	8739	0.009	-0.0913	No
80	MYH10	2640673	8745	0.008	-0.0915	No
81	CALB1	460070	8880	0.007	-0.0987	No
82	TLK2	1170161	8891	0.007	-0.0991	No
83	SLC7A9	5420735 5700450	8990	0.005	-0.1043	No
84	PPARA	2060026	9021	0.005	-0.1059	No
85	PFKFB1	2370128	9120	0.004	-0.1112	No
86	INHBC	3780242	9138	0.003	-0.1120	No
87	WNT3	2360685	9218	0.002	-0.1163	No
88	FGF10	730458 840706	9415	-0.001	-0.1269	No
89	HOXD10	6100039	9479	-0.002	-0.1303	No
90	GBE1	2190368	9487	-0.002	-0.1307	No
91	MLLT6	3870168	9490	-0.002	-0.1307	No
92	GOLGA4	460300	9534	-0.002	-0.1330	No
93	GIPC2	3800463	9732	-0.005	-0.1436	No
94	EIF4G1	4070446	10031	-0.009	-0.1597	No
95	LRRC19	2680025	10188	-0.012	-0.1680	No
96	KYNU	1410435	10247	-0.012	-0.1709	No
97	AKT2	3850541 3870519	10409	-0.015	-0.1794	No
98	CRABP2	6940725	10468	-0.016	-0.1823	No
99	C4A	360286 3830100 5220750 6420132	10821	-0.021	-0.2011	No
100	DNAJA2	2630253 6860358	11093	-0.026	-0.2154	No
101	SS18	1940440 2900072 6900129	11309	-0.029	-0.2266	No
102	TIMELESS	3710315	11391	-0.031	-0.2305	No
103	SP8	4060576	11602	-0.035	-0.2414	No
104	SLC26A3	380750	11680	-0.037	-0.2450	No
105	NRAP	1780433	11966	-0.042	-0.2598	No
106	TCF2	870338 5050632	12094	-0.045	-0.2660	No
107	HOXA10	6110397 7100458	12108	-0.045	-0.2660	No
108	FABP2	5050673	12110	-0.045	-0.2654	No
109	RARB	430139 1410138	12233	-0.048	-0.2713	No
110	GPR124	510292 6290047	12386	-0.052	-0.2787	No
111	TRPC5	3390270	12414	-0.053	-0.2794	No
112	FLNC	2360048 5050270	12481	-0.055	-0.2821	No
113	PITX2	870537 2690139	12609	-0.058	-0.2881	No
114	SYT6	2510280 3850128 4540064	12659	-0.059	-0.2898	No
115	PAX7	6860593	12692	-0.060	-0.2906	No
116	PPP1R14D	2190168	12859	-0.065	-0.2986	No
117	SEC24C	6980707	13218	-0.078	-0.3169	No
118	UBE2R2	1230504	13291	-0.081	-0.3195	No
119	KCNE1L	4670092	13292	-0.081	-0.3183	No
120	CNTFR	4480092 6200064	13374	-0.085	-0.3213	No
121	CREB1	1500717 2230358 3610600 6550601	13420	-0.087	-0.3224	No
122	CHRDL1	1580037 6380204	13783	-0.104	-0.3405	No
123	PAFAH2	3140451 5720593 6510014	13796	-0.104	-0.3395	No
124	PTPRG	2650524 1340022	13832	-0.106	-0.3398	No
125	HOXA9	610494 4730040 5130601	13898	-0.111	-0.3416	No
126	PCK1	7000358	13939	-0.113	-0.3420	No
127	MAP3K11	7000039	13987	-0.115	-0.3428	No
128	LRRN1	3290154	14027	-0.117	-0.3431	No
129	NEUROG2	5420278	14144	-0.124	-0.3475	No
130	F2	5720280	14186	-0.127	-0.3477	No
131	PRKAG1	6450091	14196	-0.128	-0.3462	No
132	POU5F1	450739 4560605	14314	-0.136	-0.3505	No
133	LGALS4	2260215 3390338	14561	-0.157	-0.3614	No
134	HSPD1	60097 2030451	14618	-0.161	-0.3619	No
135	JMJD1C	940575 2120025	14662	-0.165	-0.3617	No
136	OBSCN	3610129	14768	-0.175	-0.3647	No
137	PEX16	4560044	14888	-0.186	-0.3683	No
138	ARFGEF2	5550500	15044	-0.203	-0.3735	No
139	GLTP	3440603	15082	-0.208	-0.3723	No
140	SLC25A5	1980672	15121	-0.213	-0.3711	No
141	EEF1B2	4850400 6130161	15140	-0.215	-0.3687	No
142	ZIC4	1500082	15230	-0.226	-0.3701	No
143	LTB4R2	1990746	15390	-0.249	-0.3749	No
144	PCBP4	6350722	15431	-0.255	-0.3731	No
145	PRG4	5860156 6650086	15566	-0.280	-0.3760	No
146	CBX7	3940035	15581	-0.282	-0.3724	No
147	MARK2	7210608	15621	-0.288	-0.3701	No
148	ASB7	520242 2450088 3990563 4280538	15762	-0.313	-0.3728	No
149	FKBP5	2190048	16035	-0.368	-0.3819	No
150	TOMM70A	780114	16145	-0.394	-0.3817	No
151	SLC25A1	4050402	16316	-0.442	-0.3841	Yes
152	NET1	2900707	16374	-0.460	-0.3801	Yes
153	PDLIM7	4780136	16387	-0.462	-0.3736	Yes
154	COL15A1	6840113	16406	-0.468	-0.3674	Yes
155	MOV10	50673 430577 3870280	16442	-0.478	-0.3619	Yes
156	PELO	3440706	16483	-0.488	-0.3565	Yes
157	NR1H3	4810215 5570292	16500	-0.491	-0.3498	Yes
158	RPS3A	2470086	16504	-0.492	-0.3423	Yes
159	PKP4	3710400 5890097	16600	-0.526	-0.3394	Yes
160	AGPAT1	610056	16674	-0.551	-0.3348	Yes
161	PDE3B	2030563	16711	-0.562	-0.3281	Yes
162	ADRB2	3290373	16860	-0.609	-0.3267	Yes
163	PRKCSH	3360398	16870	-0.610	-0.3177	Yes
164	GMPPB	4610538	16879	-0.615	-0.3087	Yes
165	TMPIT	3830538	16886	-0.618	-0.2994	Yes
166	CLCN2	1940021	16946	-0.640	-0.2927	Yes
167	NIPSNAP1	6860138	17091	-0.701	-0.2897	Yes
168	NTNG2	1770438 6380408	17393	-0.833	-0.2932	Yes
169	AP1B1	4290373	17427	-0.849	-0.2819	Yes
170	TPI1	1500215 2100154	17555	-0.922	-0.2745	Yes
171	LMAN2	430154	17653	-0.976	-0.2647	Yes
172	RTN4	50725 630647 870097 870184	17730	-1.005	-0.2533	Yes
173	PDE8A	5080446	17757	-1.021	-0.2389	Yes
174	LPL	1450735 2970706	17760	-1.023	-0.2232	Yes
175	BAZ2A	730184	17764	-1.024	-0.2075	Yes
176	PDZK1	2320128	17838	-1.082	-0.1948	Yes
177	ETFDH	4670358	17843	-1.086	-0.1782	Yes
178	RASGRP2	2970333	17897	-1.125	-0.1637	Yes
179	ZSWIM3	1230563	17932	-1.148	-0.1478	Yes
180	SLC25A25	1230605	17968	-1.178	-0.1315	Yes
181	SESN3	110687	18034	-1.234	-0.1159	Yes
182	SLC26A6	4810575	18043	-1.242	-0.0972	Yes
183	TP53	6130707	18184	-1.390	-0.0833	Yes
184	GCH1	670364 6550358	18206	-1.422	-0.0624	Yes
185	USP52	3710215 6380133	18224	-1.453	-0.0409	Yes
186	TRAF4	3060041 4920528 6980286	18403	-1.762	-0.0233	Yes
187	PAK4	1690152	18548	-2.254	0.0037	Yes