DatasetSet_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch_repos
Phenotypephenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in classabsentNotch
GeneSetFLECHNER_KIDNEY_TRANSPLANT_WELL_UP
Enrichment Score (ES)0.5382241
Normalized Enrichment Score (NES)1.7505563
Nominal p-value0.0
FDR q-value0.030879412
FWER p-Value0.293
Table: GSEA Results Summary



Fig 1: Enrichment plot: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MCL11660672125.7940.0138Yes
2ATG12780167334.9090.0249Yes
3SFRS12360440394.8460.0367Yes
4H3F3B1410300424.8220.0486Yes
5WSB1870563474.7830.0603Yes
6AP3S15570044484.7760.0722Yes
7ACBD32760170594.6150.0831Yes
8RPP147040014664.4850.0939Yes
9APLP23610037974.1700.1027Yes
10MAPRE132900371224.0310.1114Yes
11HAT137100821323.9450.1207Yes
12PRKAR1A34503691453.8720.1297Yes
13SMAD557004971483.8490.1392Yes
14JTB69804001493.8320.1487Yes
15ABI128501521623.7840.1575Yes
16OXCT166502791863.6860.1654Yes
17RALBP147806322003.6050.1737Yes
18LEPROTL169001102063.5910.1823Yes
19TOPORS40605922273.5000.1899Yes
20SERINC166500202473.4320.1974Yes
21RAB1A23706712523.4050.2057Yes
22IDH119900212823.2850.2123Yes
23SFRS2IP730687 15003733013.2240.2193Yes
24NARS16607223093.1920.2269Yes
25PSMD1456905933173.1660.2344Yes
26HNRPC1570133 36101313473.0700.2404Yes
27PSMA445604273513.0590.2479Yes
28ANXA510503733972.9440.2527Yes
29RB159003384112.9120.2593Yes
30MARCKS70404504522.8080.2641Yes
31PARG501394582.7970.2708Yes
32AHCYL15406094652.7800.2773Yes
33MSN40600444702.7690.2840Yes
34DDX3X21900204942.7250.2895Yes
35PPP2CB55705935032.7110.2959Yes
36CREBBP5690035 70400505352.6250.3007Yes
37IFNGR16105775392.6170.3070Yes
38PDIA321202705522.5810.3128Yes
39MORF4L264501335662.5480.3184Yes
40RNF626400355672.5440.3248Yes
41CFDP170001126012.4810.3291Yes
42HNRPDL1050102 1090181 53604716032.4800.3353Yes
43ETF167700756202.4470.3405Yes
44ATP6V1A65902426662.3640.3439Yes
45H2AFZ14701686732.3600.3494Yes
46TBL1X64005247262.2800.3522Yes
47UGCG34200537552.2340.3563Yes
48IL6ST58900477592.2300.3617Yes
49SHFM115701147632.2260.3670Yes
50VCAM129004507862.1900.3713Yes
51EFHA14540167 46106717902.1870.3766Yes
52SLC39A661000728232.1400.3801Yes
53NDUFAF11301138582.1010.3835Yes
54TOB141501388722.0860.3880Yes
55PRDX438000398862.0640.3924Yes
56SC4MOL31405248972.0530.3970Yes
57ANP32A510044 1580095 26800378992.0490.4020Yes
58PPID26807079142.0220.4063Yes
59LASP11690528 2190341 64203419332.0000.4103Yes
60ATP2A21090075 39902799391.9870.4149Yes
61SNX22470068 3360364 65100649641.9340.4184Yes
62NXF115703779911.8970.4217Yes
63PPP1R23710278 140072510421.8380.4236Yes
64ELOVL5380017010461.8360.4280Yes
65ETFA50347 5690040 637004410531.8300.4322Yes
66PKM26520403 7050010581.8260.4365Yes
67GSTO1665060010621.8200.4409Yes
68FECH2810605 3120088 492041110641.8180.4454Yes
69FNTA7005910751.8080.4493Yes
70LAMP21230402 198037310821.7970.4535Yes
71SNRPD3297005010841.7950.4579Yes
72TXNDC152039811051.7710.4612Yes
73DCTD94016211951.6710.4604Yes
74CYCS203007212121.6570.4637Yes
75COPS2306014212321.6370.4667Yes
76PTPRC130402 529014812821.5740.4680Yes
77COPA257051912971.5550.4711Yes
78RAC1481068713041.5480.4746Yes
79CCNG2319009513471.5020.4760Yes
80TOMM34569010214071.4340.4763Yes
81COPS51340722 505021514361.4060.4783Yes
82PRPF40A1190138 219016114371.4050.4818Yes
83LITAF694067114961.3470.4820Yes
84HMGN1265002615321.3060.4833Yes
85OGT2360131 461033315421.2980.4860Yes
86PJA243053715441.2960.4892Yes
87PTP4A2870154 6040070 6130242 676022415681.2690.4911Yes
88ATP6V1B2406052815691.2680.4943Yes
89RBM32360739 570016715741.2650.4972Yes
90TOMM70A78011416341.2120.4970Yes
91RYK1500338 177007216401.2080.4997Yes
92PUM1613050016541.1820.5019Yes
93NACA520326 589067316761.1670.5037Yes
94CYP1B1476073516931.1560.5057Yes
95PAPPA2589004117121.1450.5075Yes
96SH3BGRL206011017251.1370.5097Yes
97AK3L1710060117791.0870.5095Yes
98SEC24B460717 306004018851.0210.5063Yes
99CD9473004119141.0030.5072Yes
100DICER154028619201.0010.5095Yes
101RPL22407007019241.0000.5118Yes
102CRYZ1770110 2360484 481054119390.9940.5135Yes
103ARMCX2232016720090.9590.5121Yes
104RECQL2510128 2640136 604068720210.9550.5139Yes
105SLC25A134920072 569072220500.9390.5147Yes
106YWHAE531043520860.9110.5150Yes
107CX3CR1169057720910.9100.5170Yes
108FPGT539027321040.9030.5186Yes
109RPS6KA3198070721300.8890.5195Yes
110NDUFA55720239 655003521590.8730.5201Yes
111PROSC38048422160.8390.5191Yes
112PSMC52760315 655002122330.8300.5203Yes
113NCOA3454019522840.8020.5196Yes
114STAT3460040 371034122860.8010.5215Yes
115HIPK111019323130.7860.5220Yes
116CALU2680403 3520056 4610348 5720176 613012123240.7790.5234Yes
117PSMC6281002123290.7760.5251Yes
118PEX3276010023420.7690.5264Yes
119DYRK1A319018123530.7630.5277Yes
120ARHGEF18212027923890.7490.5277Yes
121ACADSB52017024090.7330.5285Yes
122MYH10264067324260.7180.5294Yes
123HNRPK1190348 2060411 2570092 684055124270.7170.5312Yes
124PTGES32190440 268052424460.7090.5319Yes
125SRP72399042724550.7070.5332Yes
126ANK31500161 2900435 4210154 640010024690.6950.5343Yes
127CDK2AP1234015624970.6770.5345Yes
128DYNLT3557039825430.6560.5336Yes
129ASF1A705002025560.6510.5346Yes
130HSPA5513067125600.6500.5360Yes
131CXCL9157067325960.6360.5357Yes
132SMURF2194016126240.6220.5358Yes
133MSH3677057526480.6120.5360Yes
134PPM1B380180 450154 361021526520.6110.5374Yes
135RAB11A536007926650.6030.5382Yes
136ALG84150497 4780500 629056327120.5780.5371No
137IGFBP42680309 542044127290.5710.5377No
138TFPI1400288 555000827620.5570.5373No
139AP3D1454013828260.5290.5352No
140GTF3A234045129600.4750.5290No
141SCFD13440692 622036929710.4730.5297No
142F2R481018029730.4730.5308No
143ABAT1940520 2690021 569016729870.4690.5312No
144STRN31450093 620068530210.4540.5306No
145ARFGEF1676049430310.4520.5312No
146PPIB428045030710.4330.5301No
147BRD81170463 2900075 4050397 659033230760.4320.5310No
148TNPO1730092 226073532030.3900.5250No
149ATF22260348 248044132260.3830.5248No
150GBAS676027832270.3830.5257No
151CITED25670114 513008832360.3790.5262No
152DLD4150403 659034132400.3790.5270No
153CLU542007532580.3720.5270No
154TOP2B698030932620.3720.5278No
155NRIP1319003932690.3690.5283No
156RRAGA640060333030.3540.5274No
157E2F350162 46018033200.3500.5274No
158PEX11B651015233540.3410.5264No
159KRIT12640500 4230435 473018434030.3280.5246No
160SEC22B319027834120.3240.5250No
161CREB11500717 2230358 3610600 655060134140.3230.5257No
162HDGF5130114 5420066 659015234260.3180.5259No
163WEE1339007034300.3170.5266No
164PICALM194028034540.3100.5261No
165ADH1A317042735250.2880.5229No
166RBL2580446 140067035920.2670.5200No
167TXNDC9158007936160.2600.5194No
168ANXA4140031536300.2560.5193No
169FNDC3A2690097 329004436350.2550.5197No
170YWHAH1660133 281005336530.2510.5194No
171CDS1345039737020.2390.5173No
172NPTN620037337070.2380.5177No
173CLDN104070364 4590059 4920097 5080687 662027037720.2220.5148No
174COPB1539003738080.2150.5134No
175DPM11240050 4810019 638039838210.2130.5132No
176SLC1A1520372 642005938390.2100.5128No
177EVI2B105046538610.2060.5122No
178TXNL4A4120286 651024238700.2040.5123No
179UBE4A610052038930.1990.5115No
180AMD1629012839430.1880.5093No
181NR1D22360014 454001440780.1640.5024No
182LRRFIP1870259 1050204 276037741070.1600.5012No
183ACTA260008 123008241280.1570.5005No
184ACSL4510020 1240041 3190050 4540500 557046341420.1550.5002No
185ARF4319066141800.1510.4985No
186DHX960017 1170095 226001442010.1480.4978No
187LY751990358 459013642100.1450.4977No
188MDH16660358 676073142430.1410.4963No
189ABP11980609 6005642660.1390.4955No
190THRAP1247012143320.1310.4922No
191GALC2260685 4810161 637004044140.1220.4881No
192BIRC3655041144150.1220.4884No
193HMGN34210541 467057744530.1180.4866No
194SELENBP1385057544910.1140.4849No
195DUSP31240129 684021545010.1130.4847No
196UBQLN2430397 1170594 407012146150.1030.4787No
197COL1A238036446350.1020.4779No
198FRMD4B677073647690.0920.4708No
199SAP18361009247790.0910.4706No
200FYN2100468 4760520 485068747850.0910.4705No
201PFTK1178018148490.0860.4673No
202PTPN122030309 6020725 6130746 629060948510.0850.4674No
203HMGB2264060348560.0850.4674No
204AZIN1345007049420.0810.4630No
205TANK1090020 2060458 237040050150.0760.4592No
206ACSL3314019551010.0720.4547No
207QKI5220093 613004451650.0680.4514No
208FMO3248036952130.0660.4490No
209SP3384033852160.0660.4490No
210PIK3C2A604059352310.0650.4484No
211RERE394027952780.0640.4461No
212GPC3618073553330.0610.4432No
213LGALS1645019353520.0610.4424No
214SPARC169008653550.0600.4425No
215NNT540253 1170471 5550092 676039756040.0520.4290No
216FHL16027856150.0510.4285No
217USP3378004756420.0500.4272No
218CDC42BPA84067156610.0500.4264No
219GDI2237006857060.0480.4241No
220IGF1R336049457190.0480.4235No
221SLC16A4245050057310.0470.4230No
222HNRPH22630040 572067158950.0420.4142No
223CNBP257016159180.0420.4131No
224MUT690017061100.0360.4027No
225CFLAR2320605 618044061180.0360.4024No
226IGJ117054162530.0330.3951No
227ARPC51740411 345030062560.0330.3951No
228F2RL1329027963340.0310.3909No
229MYH11710027363620.0300.3895No
230GRB10698008264000.0290.3876No
231BAMBI665046365360.0260.3802No
232SH3BGR84040066210.0240.3756No
233HSD17B4478050466230.0240.3757No
234CAPZA1314039066550.0240.3740No
235PAM529052866830.0230.3726No
236HIBCH415002567330.0220.3699No
237CRYAA203016469470.0180.3583No
238CLASP2251013969490.0180.3583No
239ENPP2586054670020.0170.3555No
240SLC34A143004470360.0160.3537No
241PFN2730040 570002671740.0140.3462No
242AUH557015272000.0130.3448No
243PTHR12640711 336064774150.0090.3331No
244DSTN314059274720.0080.3301No
245XPO154070774920.0080.3290No
246NDUFS1265025374980.0080.3288No
247TSPAN8174053876210.0050.3221No
248SEC23A586003577230.0040.3165No
249EPS15420021577700.0030.3140No
250CASP45860047 66500937997-0.0010.3016No
251NEK745400268012-0.0010.3008No
252OAT5406328062-0.0020.2982No
253NUP15370004528186-0.0040.2914No
254BNIP331402708199-0.0040.2908No
255DDX5940021 2630338 34401488359-0.0070.2820No
256RBP445401318423-0.0080.2786No
257PLS332900828484-0.0090.2753No
258SERINC320306858594-0.0110.2694No
259SFRP169803158599-0.0110.2692No
260UGT837101288652-0.0120.2663No
261PLSCR126503018664-0.0120.2658No
262NEK4430731 2060010 70003338746-0.0130.2613No
263RFK10500708765-0.0140.2604No
264EPS870502048779-0.0140.2597No
265SLC17A31780463 56704358863-0.0150.2552No
266GBE121903689010-0.0180.2472No
267ANXA761104469021-0.0180.2467No
268SDCBP460487 2190039 52704419039-0.0180.2458No
269PSMA35900047 70401619078-0.0190.2438No
270CAT42801529283-0.0230.2326No
271STCH39900509359-0.0240.2286No
272TNFRSF11B46104469372-0.0240.2280No
273PSMD112340538 65100539447-0.0250.2240No
274ANK265105469507-0.0270.2208No
275KCNJ1570176 69007509570-0.0280.2174No
276SERPINE228103909586-0.0280.2167No
277ACTR211703329593-0.0280.2164No
278TEK63505419623-0.0290.2149No
279RAN2260446 45906479637-0.0290.2143No
280WDFY33610041 4560333 45702739869-0.0340.2017No
281TIAL14150048 65106059953-0.0360.1972No
282NUP501240519 2640390 2650471 47301339990-0.0370.1953No
283TRIM2430546 117028610102-0.0390.1893No
284FABP4505011410118-0.0390.1886No
285LUM542007910122-0.0400.1885No
286BBOX12030538 237045210153-0.0400.1870No
287TUSC3169041110156-0.0400.1870No
288MYO1B77037210173-0.0410.1862No
289ACSM36220170 2650706 590002010251-0.0420.1820No
290FGL2317073110657-0.0510.1599No
291PGM1384040810717-0.0530.1568No
292PDCD6476023910765-0.0540.1544No
293CDH111230133 2100180 461011010844-0.0550.1502No
294TM9SF1276033310845-0.0550.1504No
295MINPP1870301 2230731 2940148 5860736 611011210891-0.0560.1480No
296CNIH2190484 508060910897-0.0560.1479No
297LEPR1340398 319032410898-0.0560.1480No
298UBXD2428009210908-0.0570.1477No
299IFI16652060111411-0.0710.1203No
300ERBB3589037211431-0.0720.1194No
301PRKCI542013911438-0.0720.1193No
302NMI52027011645-0.0790.1081No
303RHOBTB3401068711668-0.0800.1071No
304MAOA1410039 461032411760-0.0830.1023No
305SYPL12680706 590040311836-0.0860.0984No
306MMP7178049711916-0.0890.0943No
307CREB3L2339048412017-0.0930.0890No
308NBN730538 2470619 478059412073-0.0950.0863No
309LRP21400204 329070612114-0.0970.0843No
310C1S840184 684011412134-0.0980.0835No
311GBP178007512407-0.1130.0688No
312CRYM394052812534-0.1190.0622No
313KNG16400576 677034712540-0.1200.0622No
314GALNT14070487 6130100 6250132 690004812567-0.1210.0611No
315SPARCL1199034812569-0.1210.0614No
316CXCL12580546 4150750 457006812660-0.1270.0567No
317AHR456067112673-0.1280.0564No
318PHKB2060735 423048712721-0.1310.0541No
319C1D421009212769-0.1350.0519No
320THEM2684074612874-0.1420.0465No
321MEGF9232009712920-0.1450.0444No
322PCK1700035812936-0.1460.0439No
323ARID5B11040312985-0.1500.0417No
324BTBD31980041 2510577 3190053 420074613039-0.1530.0392No
325GULP12230725 2350039 557044613076-0.1560.0376No
326CD2AP194036913118-0.1590.0357No
327HNRPR2320440 2900601 461000813138-0.1610.0351No
328BMP2K60541 557050413165-0.1630.0340No
329PTPRD520008 312009713168-0.1640.0343No
330DST430026 1090035 2340577 3170068 3870112 4780519 6400167 6450358 704034713203-0.1660.0329No
331GSN383016813349-0.1770.0254No
332SLC22A2567052013557-0.1990.0145No
333ZMPSTE241090112 2030593 3780129 459004413649-0.2100.0100No
334HSPE1317043813651-0.2100.0105No
335PAFAH1B14230333 6420121 645006613670-0.2130.0100No
336PLOD2336042713722-0.2190.0078No
337HPGD677019213876-0.236-0.0001No
338PPP2R5C3310121 665067213892-0.238-0.0003No
339TSC22D11340739 604018113943-0.244-0.0024No
340COL3A16420273 662004414059-0.260-0.0081No
341CD443990072 4850671 5860411 6860148 705055114275-0.293-0.0192No
342DNAJA11660010 2320358 684013614448-0.323-0.0278No
343HADH1690341 383046514581-0.346-0.0342No
344VTI1B3140364 651049714589-0.347-0.0337No
345NONO705001414735-0.377-0.0408No
346IL7R2060088 638050014762-0.383-0.0412No
347EIF3S5655028014801-0.393-0.0424No
348SCP2520092 1570692 2570066 620053714818-0.395-0.0423No
349COL4A1174057514891-0.411-0.0452No
350USP14730377 405033314922-0.419-0.0458No
351RAB8A3610594 602073615009-0.439-0.0494No
352STAT16510204 659055315078-0.460-0.0520No
353SWAP702810577 2850739 513059415100-0.466-0.0520No
354SRRM1611002515118-0.469-0.0518No
355HERPUD1710044015120-0.470-0.0507No
356VIM2043115151-0.483-0.0511No
357MTMR4454052415156-0.484-0.0501No
358UBE2N520369 290004715283-0.527-0.0557No
359FBXO96420035 705012915408-0.571-0.0611No
360PKN2940746 235016815423-0.577-0.0605No
361TNFSF10317030015472-0.594-0.0616No
362NAP1L12510593 5900215 5090470 450079 492028015578-0.634-0.0658No
363SHOC21340064 157054615599-0.642-0.0653No
364PRKRA251060015640-0.659-0.0659No
365CCT2169011315681-0.678-0.0664No
366EEF1D2320524 251034115707-0.689-0.0660No
367ACTG154021515739-0.702-0.0660No
368HSBP1690068715898-0.789-0.0727No
369QDPR61001715962-0.825-0.0741No
370EIF3S2380711 870433 245061916073-0.883-0.0780No
371DEK1050451 456003716111-0.906-0.0777No
372H2AFV2030577 522012916227-0.975-0.0816No
373ADH56290100 638071116259-0.995-0.0808No
374IMMT870450 428043816262-0.996-0.0785No
375ITM2A460576 421008616268-0.997-0.0763No
376RHOA580142 5900131 534045016279-1.002-0.0743No
377TBCA640009516300-1.012-0.0729No
378TARDBP870390 235009316405-1.070-0.0760No
379RPL36AL539002516523-1.147-0.0795No
380HNRPA2B11240619 6200161 6200494 698040816546-1.160-0.0778No
381SFRS250707 38059316661-1.237-0.0810No
382ARF6352002616714-1.273-0.0807No
383BCAP31119052016716-1.274-0.0776No
384PAPSS1134057616759-1.308-0.0766No
385ADD34150739 539060016871-1.415-0.0792No
386PARK7456019516872-1.415-0.0757No
387ZMYND11630181 2570019 4850138 536004016891-1.433-0.0731No
388PSME2485008616943-1.466-0.0723No
389DSCR14540048 622003916959-1.477-0.0694No
390SEPT61740739 522040216965-1.480-0.0660No
391CRYAB481061917039-1.517-0.0662No
392TGFBR21780711 1980537 655039817052-1.525-0.0631No
393GCH1670364 655035817089-1.551-0.0612No
394DDOST268073117157-1.597-0.0609No
395UQCRC152005317166-1.607-0.0574No
396GNB2L1590052017195-1.630-0.0548No
397CYB5R3430097 686040017268-1.695-0.0546No
398VAT1105004017308-1.732-0.0524No
399MRPS687016417362-1.772-0.0509No
400MVP401025317409-1.823-0.0489No
401RBPMS399049417423-1.837-0.0450No
402PGK11570494 63030017561-1.960-0.0477No
403DPYSL22100427 3130112 570032417569-1.966-0.0432No
404HSPA82120315 1050132 655074617686-2.090-0.0443No
405DYNLL1557011317762-2.193-0.0430No
406PARP14780446 640033817812-2.259-0.0401No
407PPP2R1A206027917902-2.395-0.0390No
408SLC25A1405040217979-2.509-0.0369No
409MRPS18B557008618094-2.671-0.0365No
410COMT360687 510577 570009218154-2.778-0.0329No
411MYH93120091 485029218242-2.994-0.0302No
412TSPO110692 339045218275-3.083-0.0243No
413RAB7L143045018366-3.343-0.0209No
414TAPBP198011018385-3.409-0.0134No
415GOT1294046518396-3.438-0.0054No
416PSMB9698047118404-3.4730.0029No
417KHK1090204 387020418412-3.4980.0112No
Table: GSEA details [plain text format]



Fig 2: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: FLECHNER_KIDNEY_TRANSPLANT_WELL_UP: Random ES distribution   
Gene set null distribution of ES for FLECHNER_KIDNEY_TRANSPLANT_WELL_UP