Details for gene set IMMUNE

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	IMMUNE_RESPONSE
Enrichment Score (ES)	-0.44658607
Normalized Enrichment Score (NES)	-1.8953439
Nominal p-value	0.0
FDR q-value	0.123822905
FWER p-Value	0.412

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	IFITM2	1417460_at	28	2.903	0.0170	No
2	TGFB1	1420653_at 1445360_at	106	2.330	0.0281	No
3	CEBPG	1425261_at 1425262_at 1451639_at	196	1.906	0.0360	No
4	FYN	1417558_at 1441647_at 1448765_at	216	1.850	0.0468	No
5	BST1	1449453_at 1449454_at	264	1.740	0.0555	No
6	PTPRC	1422124_a_at 1440165_at	268	1.734	0.0663	No
7	SKAP1	1437249_at 1440326_at 1440782_at 1441322_at 1441418_at 1441589_at 1456678_at	515	1.427	0.0640	No
8	CTLA4	1419334_at	529	1.413	0.0723	No
9	GZMA	1417898_a_at	624	1.325	0.0763	No
10	ETS1	1422027_a_at 1422028_a_at 1426725_s_at 1452163_at	913	1.137	0.0702	No
11	BNIP3L	1416922_a_at 1416923_a_at 1448525_a_at	928	1.130	0.0767	No
12	MS4A2	1421475_at 1443264_at	994	1.096	0.0806	No
13	TRAT1	1427532_at 1437561_at	1026	1.082	0.0859	No
14	PRKRA	1447737_at 1448923_at	1043	1.076	0.0920	No
15	CCBP2	1422111_at 1422112_at 1437937_at	1259	1.017	0.0885	No
16	CST7	1419202_at 1445263_at	1400	0.990	0.0883	No
17	ODZ1	1421508_at	1611	0.946	0.0846	No
18	COLEC12	1419693_at 1446535_at	1936	0.871	0.0751	No
19	CCR9	1421919_a_at 1421920_a_at 1427419_x_at	2092	0.837	0.0733	No
20	CHUK	1417091_at 1428210_s_at 1451383_a_at	2099	0.833	0.0782	No
21	SEMA7A	1422040_at 1459903_at	2104	0.832	0.0833	No
22	IL2RA	1420691_at 1420692_at	2200	0.808	0.0840	No
23	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	2454	0.753	0.0771	No
24	TGFB2	1423250_a_at 1438303_at 1446141_at 1450922_a_at 1450923_at	2585	0.723	0.0757	No
25	LAT2	1426169_a_at	2733	0.693	0.0733	No
26	AQP9	1421605_a_at 1424011_at	2833	0.676	0.0730	No
27	CCL5	1418126_at	3146	0.621	0.0625	No
28	LY75	1449328_at	3228	0.606	0.0626	No
29	MR1	1421898_a_at 1421899_a_at	3288	0.597	0.0636	No
30	YTHDF2	1451317_at 1460357_at	3912	0.508	0.0382	No
31	CCL24	1450488_at	3923	0.508	0.0409	No
32	RSAD2	1421008_at 1421009_at 1436058_at	3925	0.507	0.0440	No
33	CEBPB	1418901_at 1427844_a_at	4394	0.452	0.0254	No
34	CCR5	1422259_a_at 1422260_x_at 1424727_at	4701	0.420	0.0139	No
35	DMBT1	1418287_a_at	5121	0.378	-0.0030	No
36	IL4	1449864_at	5329	0.360	-0.0102	No
37	CCL4	1421578_at	5373	0.355	-0.0100	No
38	SOCS5	1423349_at 1423350_at 1441640_at 1442890_at	5438	0.349	-0.0107	No
39	CD28	1417597_at 1437025_at 1443703_at	5475	0.347	-0.0102	No
40	BCAR1	1439388_s_at 1450622_at	5606	0.335	-0.0141	No
41	SP2	1426237_at 1447730_at	5675	0.329	-0.0151	No
42	XBP1	1420011_s_at 1420012_at 1420886_a_at 1437223_s_at	5773	0.321	-0.0176	No
43	CCR2	1421186_at 1421187_at 1421188_at 1460067_at	5776	0.320	-0.0156	No
44	ZAP70	1422701_at 1439749_at 1440178_x_at	6081	0.294	-0.0278	No
45	IL7	1422080_at 1436861_at	6130	0.290	-0.0282	No
46	MALT1	1445068_at 1456126_at 1456429_at	6180	0.286	-0.0286	No
47	UBE2N	1422559_at 1435384_at	6255	0.280	-0.0303	No
48	TLR8	1450267_at	6439	0.266	-0.0370	No
49	RGS1	1417601_at	6520	0.259	-0.0391	No
50	POU2F2	1427713_x_at 1427725_a_at	6542	0.257	-0.0384	No
51	IL4R	1421034_a_at 1423996_a_at 1447858_x_at	6783	0.240	-0.0479	No
52	IK	1423791_at 1435988_x_at 1439271_x_at 1451113_a_at	6950	0.226	-0.0542	No
53	CD164	1416440_at 1431527_at	7009	0.222	-0.0554	No
54	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	7261	0.204	-0.0657	No
55	OPRD1	1422121_at	7383	0.196	-0.0700	No
56	APLN	1451038_at	7488	0.189	-0.0736	No
57	SLA2	1437504_at 1451492_at	7640	0.178	-0.0795	No
58	CFHR1	1419436_at	7776	0.170	-0.0846	No
59	C1QBP	1448274_at 1455821_x_at	7989	0.155	-0.0934	No
60	FYB	1452117_a_at	8124	0.145	-0.0986	No
61	FCGRT	1416978_at	8135	0.144	-0.0982	No
62	IL10	1450330_at	8296	0.133	-0.1047	No
63	LAT	1460651_at	8806	0.101	-0.1275	No
64	IL17A	1421672_at	9036	0.087	-0.1375	No
65	DEFB103A	1421806_at	9042	0.087	-0.1372	No
66	CXCL12	1417574_at 1439084_at 1448823_at	9210	0.076	-0.1444	No
67	CD97	1418394_a_at	9272	0.072	-0.1467	No
68	CHST4	1453393_a_at	9401	0.064	-0.1522	No
69	APOA1	1419232_a_at 1419233_x_at 1438840_x_at 1455201_x_at	9677	0.046	-0.1646	No
70	CD86	1420404_at 1449858_at	9864	0.034	-0.1729	No
71	FCGR3A	1425225_at 1448620_at	9892	0.033	-0.1739	No
72	CCL27	1419188_s_at 1430375_a_at 1434962_x_at	10078	0.020	-0.1823	No
73	CCR1	1419609_at 1419610_at	10082	0.020	-0.1823	No
74	THY1	1423135_at	10150	0.015	-0.1853	No
75	DPP8	1428697_at 1431064_at 1445705_x_at	10261	0.010	-0.1903	No
76	GBP2	1418240_at 1435906_x_at	10918	-0.033	-0.2203	No
77	APOA2	1417950_a_at	11153	-0.047	-0.2308	No
78	FTH1	1448771_a_at	11179	-0.049	-0.2316	No
79	TARBP2	1423616_at 1438952_x_at	11182	-0.049	-0.2314	No
80	CCRL1	1426139_a_at 1437668_at 1437669_x_at	11210	-0.051	-0.2323	No
81	NCR1	1422089_at	11397	-0.062	-0.2405	No
82	IL28RA	1446908_at 1460598_at	11666	-0.079	-0.2523	No
83	EREG	1419431_at	11930	-0.095	-0.2638	No
84	CD22	1419768_at 1419769_at 1445222_at	11937	-0.095	-0.2635	No
85	PTGER4	1421073_a_at 1424208_at 1436441_at	11946	-0.095	-0.2633	No
86	SEMA3C	1420696_at 1429348_at	12021	-0.100	-0.2660	No
87	DEFB1	1419491_at 1419492_s_at	12452	-0.127	-0.2850	No
88	LY86	1422903_at	13016	-0.162	-0.3099	No
89	TRAF2	1451233_at	13030	-0.163	-0.3095	No
90	BNIP3	1422470_at	13233	-0.176	-0.3177	No
91	APOA4	1417761_at 1436504_x_at	13382	-0.186	-0.3233	No
92	IL6	1450297_at	13790	-0.213	-0.3407	No
93	CRHR1	1418810_at 1427782_a_at	13814	-0.216	-0.3404	No
94	IL18	1417932_at	13852	-0.218	-0.3407	No
95	MS4A1	1423226_at 1450912_at	14105	-0.235	-0.3508	No
96	SEMA4D	1420823_at 1420824_at	14340	-0.251	-0.3600	No
97	ST6GAL1	1420927_at 1420928_at 1443581_at 1446739_at	14418	-0.257	-0.3619	No
98	WAS	1419631_at	14495	-0.262	-0.3638	No
99	CNIH	1423727_at	14665	-0.276	-0.3698	No
100	VTN	1420484_a_at 1455098_a_at	14710	-0.279	-0.3701	No
101	IL15	1418219_at	14754	-0.283	-0.3703	No
102	TNFSF13	1445227_at	14971	-0.298	-0.3784	No
103	IL18BP	1450424_a_at	15051	-0.304	-0.3801	No
104	IKBKAP	1424142_at 1451254_at	15155	-0.312	-0.3829	No
105	CCL20	1422029_at	15181	-0.313	-0.3820	No
106	CTSG	1419594_at	15263	-0.319	-0.3838	No
107	LTB4R	1420407_at	15296	-0.322	-0.3832	No
108	PTAFR	1427871_at 1427872_at	15747	-0.355	-0.4017	No
109	MBP	1419646_a_at 1425263_a_at 1425264_s_at 1433532_a_at 1436201_x_at 1451961_a_at 1454651_x_at 1456228_x_at	15780	-0.358	-0.4009	No
110	IL6R	1422270_a_at 1452416_at	15909	-0.370	-0.4045	No
111	BCL2	1422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at	15936	-0.372	-0.4033	No
112	CCL25	1418777_at 1458277_at	16191	-0.393	-0.4125	No
113	TLR7	1419848_x_at 1422010_at 1449640_at	16273	-0.399	-0.4137	No
114	C5AR1	1422190_at 1439902_at	16283	-0.400	-0.4116	No
115	OPRK1	1446394_at 1451813_at	16301	-0.402	-0.4099	No
116	MBL2	1418787_at	16381	-0.409	-0.4110	No
117	TCF7	1433471_at 1450461_at	16395	-0.411	-0.4090	No
118	IL17B	1431693_a_at	16523	-0.423	-0.4122	No
119	C2	1416051_at 1441912_x_at 1457664_x_at	16605	-0.430	-0.4132	No
120	TREM1	1447284_at 1460282_at	16798	-0.448	-0.4192	No
121	MADCAM1	1425253_a_at	16930	-0.461	-0.4223	No
122	NFIL3	1418932_at	17165	-0.485	-0.4300	No
123	IL7R	1448575_at 1448576_at	17227	-0.491	-0.4297	No
124	BLNK	1451780_at	17243	-0.494	-0.4273	No
125	CRTAM	1449903_at	17317	-0.501	-0.4275	No
126	CCL19	1449277_at	17359	-0.506	-0.4262	No
127	CCR6	1450357_a_at	17422	-0.514	-0.4259	No
128	CMKLR1	1426072_at 1456887_at	17478	-0.520	-0.4251	No
129	GPR44	1422275_at	17495	-0.521	-0.4226	No
130	CD40LG	1422283_at	17543	-0.526	-0.4214	No
131	CXCR4	1448710_at	17598	-0.531	-0.4206	No
132	PAX5	1421765_at 1459916_at	17686	-0.543	-0.4212	No
133	BST2	1424921_at	17773	-0.554	-0.4216	No
134	SFTPD	1420378_at	18018	-0.585	-0.4292	No
135	HRH2	1423639_at	18059	-0.592	-0.4273	No
136	CIITA	1421210_at 1421211_a_at 1447075_at	18222	-0.612	-0.4309	No
137	NFAM1	1425714_a_at 1428790_at	18382	-0.634	-0.4342	No
138	GPR65	1449175_at	18652	-0.675	-0.4423	Yes
139	MAP3K7	1419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at	18709	-0.686	-0.4406	Yes
140	TREM2	1421226_at 1421792_s_at	18760	-0.693	-0.4385	Yes
141	SECTM1	1419478_at 1419479_at	18778	-0.695	-0.4349	Yes
142	SPINK5	1430567_at	18787	-0.697	-0.4309	Yes
143	GTPBP1	1450022_at 1450023_at	18835	-0.704	-0.4287	Yes
144	CD96	1419226_at	18947	-0.720	-0.4292	Yes
145	MAP4K2	1428297_at 1434833_at 1450244_a_at	18979	-0.727	-0.4261	Yes
146	IGSF6	1421408_at 1445302_at	19014	-0.732	-0.4231	Yes
147	GEM	1426063_a_at	19071	-0.742	-0.4210	Yes
148	CD79B	1417640_at	19247	-0.775	-0.4241	Yes
149	TCF12	1421908_a_at 1427670_a_at 1438762_at 1439209_at 1439619_at 1443012_at 1444620_at 1445093_at 1445133_at 1457524_at 1458337_at	19284	-0.782	-0.4209	Yes
150	FCGR2B	1435476_a_at 1435477_s_at 1447622_at 1451941_a_at 1455332_x_at	19428	-0.807	-0.4224	Yes
151	IL1R2	1419532_at 1457108_at	19450	-0.811	-0.4182	Yes
152	CTSC	1416382_at 1437939_s_at 1446834_at	19498	-0.821	-0.4152	Yes
153	VIPR1	1423004_at	19528	-0.826	-0.4114	Yes
154	CCL2	1420380_at	19682	-0.858	-0.4130	Yes
155	DPP4	1416697_at 1438279_at 1441242_at 1441342_at 1459973_x_at	19750	-0.873	-0.4106	Yes
156	CXCL13	1417851_at 1448859_at	19751	-0.873	-0.4051	Yes
157	IFITM3	1423754_at	19824	-0.889	-0.4028	Yes
158	ARHGDIB	1426454_at	20048	-0.945	-0.4071	Yes
159	PSMB10	1448632_at	20180	-0.975	-0.4070	Yes
160	IL12B	1419530_at 1449497_at	20298	-1.004	-0.4061	Yes
161	RFX1	1422109_at 1436059_at	20306	-1.005	-0.4001	Yes
162	IL12A	1425454_a_at	20338	-1.011	-0.3952	Yes
163	EBI3	1449222_at	20514	-1.053	-0.3966	Yes
164	DEFB4	1419600_at 1450554_at	20573	-1.068	-0.3925	Yes
165	RAG1	1440574_at 1450680_at	20591	-1.074	-0.3866	Yes
166	IRF8	1416714_at 1448452_at	20594	-1.075	-0.3799	Yes
167	ANXA11	1418468_at	20596	-1.075	-0.3732	Yes
168	TRAF6	1421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at	20770	-1.143	-0.3739	Yes
169	TNFAIP1	1417865_at 1417866_at 1448863_a_at	20800	-1.157	-0.3680	Yes
170	IL6ST	1421239_at 1437303_at 1452843_at 1460295_s_at	20813	-1.163	-0.3612	Yes
171	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	20996	-1.253	-0.3617	Yes
172	IL10RB	1419455_at	21001	-1.256	-0.3540	Yes
173	ATP6V0A2	1424513_at 1434791_at 1449870_a_at	21142	-1.331	-0.3521	Yes
174	LAX1	1438687_at	21276	-1.443	-0.3491	Yes
175	NCF4	1418465_at	21341	-1.500	-0.3426	Yes
176	LTF	1450009_at	21352	-1.510	-0.3336	Yes
177	LCP2	1418641_at 1418642_at	21385	-1.531	-0.3254	Yes
178	IL2RG	1416295_a_at 1416296_at	21451	-1.604	-0.3183	Yes
179	CD274	1419714_at	21454	-1.607	-0.3083	Yes
180	EDG6	1451024_at	21484	-1.643	-0.2993	Yes
181	TAPBP	1421812_at 1450378_at	21547	-1.717	-0.2914	Yes
182	CTSS	1448591_at	21552	-1.721	-0.2807	Yes
183	IL16	1417391_a_at 1443796_at 1447814_x_at 1448686_at	21600	-1.814	-0.2715	Yes
184	CD79A	1418830_at	21708	-2.103	-0.2631	Yes
185	CD74	1425519_a_at	21711	-2.114	-0.2499	Yes
186	TNFRSF14	1452425_at	21718	-2.133	-0.2368	Yes
187	FOXP3	1420765_a_at 1457082_at	21728	-2.176	-0.2235	Yes
188	CNR2	1450476_at	21805	-2.610	-0.2106	Yes
189	CTSW	1422632_at	21807	-2.631	-0.1941	Yes
190	CD7	1419711_at	21812	-2.672	-0.1775	Yes
191	POU2AF1	1416957_at	21814	-2.687	-0.1606	Yes
192	PDCD1	1449835_at	21822	-2.762	-0.1435	Yes
193	CD83	1416111_at	21863	-3.155	-0.1255	Yes
194	CCR4	1421655_a_at	21867	-3.180	-0.1057	Yes
195	CCL22	1417925_at	21871	-3.238	-0.0854	Yes
196	EBI2	1437356_at 1457691_at	21881	-3.381	-0.0646	Yes
197	IL27RA	1449508_at	21882	-3.395	-0.0432	Yes
198	CCR8	1422291_at	21899	-3.613	-0.0212	Yes
199	TNFRSF4	1420351_at	21900	-3.621	0.0016	Yes