Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_Q6
Enrichment Score (ES)	-0.4066361
Normalized Enrichment Score (NES)	-1.7439104
Nominal p-value	0.0
FDR q-value	0.025437465
FWER p-Value	0.177

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	73	2.425	0.0136	No
2	UBE2D3	1423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at	77	2.421	0.0304	No
3	LDB3	1416752_at 1433783_at 1451999_at	153	2.061	0.0414	No
4	ROCK2	1423592_at 1451041_at	175	1.980	0.0543	No
5	EML4	1429612_at 1447838_x_at	316	1.655	0.0594	No
6	MATR3	1434888_a_at 1438368_a_at 1441272_at 1450874_at 1458508_at	536	1.408	0.0592	No
7	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	578	1.356	0.0668	No
8	TCF8	1418926_at 1420243_at 1443005_at 1443203_at 1446127_at 1456686_at	1024	1.082	0.0539	No
9	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	1251	1.019	0.0507	No
10	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	1339	1.001	0.0537	No
11	RASD2	1427343_at 1427344_s_at 1458433_at	1358	0.999	0.0598	No
12	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	1562	0.956	0.0572	No
13	TNMD	1417979_at	1647	0.937	0.0599	No
14	VCL	1416156_at 1416157_at 1445256_at	1706	0.924	0.0637	No
15	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	1909	0.877	0.0605	No
16	CORO1C	1417752_at 1419911_at 1437721_at 1442972_at 1449660_s_at 1459169_at	1968	0.864	0.0639	No
17	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	2233	0.801	0.0574	No
18	DUSP10	1417163_at 1417164_at	2241	0.799	0.0626	No
19	RARB	1454906_at	2355	0.772	0.0628	No
20	CHD6	1427384_at 1431047_at	2380	0.768	0.0671	No
21	POU3F4	1422164_at 1422165_at	2436	0.757	0.0699	No
22	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	2454	0.753	0.0744	No
23	GPR158	1438526_at 1459430_at	2538	0.733	0.0757	No
24	SCOC	1416267_at 1430999_a_at	2546	0.731	0.0805	No
25	RHOJ	1418892_at 1444982_at	2586	0.723	0.0837	No
26	MAP2K6	1426850_a_at 1459292_at	2630	0.715	0.0868	No
27	EMILIN2	1435264_at	2679	0.704	0.0895	No
28	RAP1A	1424139_at	3762	0.526	0.0434	No
29	LRRFIP1	1433842_at 1437477_at 1448487_at	3829	0.519	0.0440	No
30	TRDN	1426134_at 1426142_a_at 1426143_at 1426144_x_at 1451801_at 1451940_x_at	3892	0.510	0.0447	No
31	DVL3	1420457_at	4143	0.479	0.0366	No
32	TGFB1I1	1418136_at	4236	0.468	0.0356	No
33	JMJD1A	1426810_at	4371	0.455	0.0326	No
34	SCN3B	1426328_a_at 1435767_at	4379	0.454	0.0355	No
35	HOXA3	1427433_s_at 1441070_at 1452421_at	4404	0.451	0.0375	No
36	RIMS1	1435667_at 1438305_at 1444393_at	4420	0.449	0.0400	No
37	PDLIM7	1417959_at 1428319_at 1443785_x_at	4843	0.405	0.0234	No
38	PDLIM4	1417928_at	4875	0.403	0.0248	No
39	PPP2R3A	1455198_a_at	4903	0.400	0.0264	No
40	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	5120	0.379	0.0191	No
41	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	5160	0.375	0.0199	No
42	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	5256	0.366	0.0181	No
43	PODN	1435180_at	5457	0.347	0.0113	No
44	ITGB1BP2	1423238_at	5641	0.332	0.0052	No
45	CKM	1417614_at	5769	0.321	0.0016	No
46	WNT5A	1436791_at 1448818_at 1456976_at	5790	0.319	0.0029	No
47	PPAP2B	1429514_at 1446850_at 1448908_at	5797	0.318	0.0049	No
48	MYL1	1452651_a_at	5811	0.316	0.0065	No
49	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	6184	0.285	-0.0086	No
50	SP7	1418425_at	6247	0.280	-0.0095	No
51	TADA3L	1417467_a_at 1448719_at	6696	0.247	-0.0284	No
52	ADAMTS12	1439827_at 1446666_at	6759	0.242	-0.0296	No
53	SRF	1418255_s_at 1418256_at	6937	0.228	-0.0361	No
54	SDPR	1416778_at 1416779_at 1443832_s_at	6971	0.225	-0.0360	No
55	HOXB5	1418415_at	7108	0.215	-0.0408	No
56	SRD5A2	1422960_at	7114	0.215	-0.0395	No
57	ACAA2	1428145_at 1428146_s_at 1455061_a_at	7234	0.206	-0.0436	No
58	RAB27A	1425284_a_at 1425285_a_at 1429123_at 1454438_at	7668	0.176	-0.0622	No
59	PRKAB2	1435874_at 1435875_at 1442001_at	7698	0.174	-0.0624	No
60	EFHD1	1448507_at	7770	0.170	-0.0644	No
61	NAV1	1436907_at 1443629_at 1446497_at	7789	0.169	-0.0641	No
62	HIST1H4I	1424854_at	7825	0.166	-0.0645	No
63	COL1A1	1423669_at 1455494_at	8118	0.145	-0.0769	No
64	MYL9	1452670_at	8147	0.143	-0.0772	No
65	PPARG	1420715_a_at	8208	0.139	-0.0790	No
66	MYLK	1425504_at 1425505_at 1425506_at	8406	0.126	-0.0872	No
67	RRM1	1415878_at 1440073_at 1448127_at	8646	0.111	-0.0974	No
68	AGL	1429083_at 1431032_at 1431033_x_at	8796	0.102	-0.1036	No
69	CFL2	1418066_at 1418067_at 1431432_at	8810	0.101	-0.1035	No
70	HOXA1	1420565_at	9009	0.089	-0.1119	No
71	NR2F1	1418157_at 1422412_x_at	9033	0.087	-0.1124	No
72	CTDSP1	1452055_at	9250	0.073	-0.1218	No
73	CDKN1B	1419497_at 1434045_at	9462	0.061	-0.1311	No
74	STARD13	1452604_at	9707	0.045	-0.1420	No
75	NFATC4	1423380_s_at 1432821_at 1454369_a_at	9710	0.045	-0.1418	No
76	NPR3	1435184_at 1448024_at 1450286_at	9789	0.040	-0.1451	No
77	SIX2	1427436_at	10092	0.019	-0.1589	No
78	TAGLN	1423505_at	10169	0.015	-0.1622	No
79	MYH11	1418122_at 1448962_at	10445	-0.002	-0.1749	No
80	PLN	1423359_at 1450952_at 1460332_at	10580	-0.010	-0.1810	No
81	MRGPRF	1425894_at	10677	-0.016	-0.1853	No
82	KCNMB1	1421400_at 1421401_at	10696	-0.017	-0.1860	No
83	IGF2AS	1427394_at	10720	-0.018	-0.1869	No
84	MUS81	1431885_a_at 1450432_s_at	10736	-0.019	-0.1875	No
85	TRIM46	1460568_at	10824	-0.026	-0.1913	No
86	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	10942	-0.035	-0.1964	No
87	TNNC1	1418370_at	10996	-0.038	-0.1986	No
88	KCNK3	1425341_at 1425342_a_at 1426058_a_at	11167	-0.048	-0.2061	No
89	DGKG	1419756_at 1431167_at 1449584_at	11415	-0.063	-0.2170	No
90	ACTR3	1426392_a_at 1434968_a_at 1452051_at	11725	-0.083	-0.2306	No
91	IGF1	1419519_at 1436497_at 1437401_at 1452014_a_at	11916	-0.094	-0.2387	No
92	NOL4	1430189_at 1441447_at 1456387_at	12208	-0.111	-0.2513	No
93	PLCB3	1448661_at	12247	-0.113	-0.2523	No
94	SEPX1	1418888_a_at	12483	-0.129	-0.2622	No
95	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	12619	-0.137	-0.2675	No
96	TAZ	1416207_at 1453785_at	12737	-0.145	-0.2718	No
97	FGFRL1	1447878_s_at 1451912_a_at	12979	-0.160	-0.2818	No
98	EPHB1	1455188_at	13254	-0.178	-0.2932	No
99	NKX2-2	1421112_at	13380	-0.186	-0.2976	No
100	NKX6-1	1425828_at	13516	-0.195	-0.3025	No
101	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	13585	-0.200	-0.3042	No
102	FOSL1	1417487_at 1417488_at	13631	-0.203	-0.3048	No
103	H2AFX	1416746_at	13647	-0.204	-0.3041	No
104	MSX1	1417127_at 1448601_s_at	13678	-0.207	-0.3040	No
105	NPAS2	1421036_at 1421037_at	13829	-0.217	-0.3094	No
106	BLOC1S1	1422614_s_at	13959	-0.225	-0.3138	No
107	PFN1	1449018_at	13989	-0.227	-0.3135	No
108	RAI2	1452358_at	14048	-0.231	-0.3146	No
109	FOSB	1422134_at	14066	-0.232	-0.3137	No
110	CNN1	1417917_at	14273	-0.247	-0.3215	No
111	FOXE3	1422393_at	14544	-0.266	-0.3320	No
112	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	14707	-0.279	-0.3375	No
113	RBBP7	1415775_at 1456227_x_at	14920	-0.294	-0.3452	No
114	HIVEP3	1421150_at 1429134_at 1439660_at 1450132_at 1458802_at	14960	-0.297	-0.3449	No
115	CSMD3	1438272_at 1438572_at 1454245_at	15129	-0.309	-0.3505	No
116	CABP1	1421255_a_at	15171	-0.312	-0.3502	No
117	HOXD10	1418606_at	15240	-0.318	-0.3511	No
118	MYL7	1449071_at	15574	-0.342	-0.3640	No
119	PDLIM3	1443299_at 1449178_at	15621	-0.345	-0.3637	No
120	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	15670	-0.350	-0.3635	No
121	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	15686	-0.351	-0.3617	No
122	KRTCAP2	1417058_a_at 1417059_at	16068	-0.382	-0.3766	No
123	MAP1A	1460566_at	16104	-0.386	-0.3755	No
124	ATP1A2	1427465_at 1434893_at 1443823_s_at 1452308_a_at 1455136_at	16112	-0.386	-0.3731	No
125	PRELP	1416321_s_at 1416322_at	16128	-0.387	-0.3711	No
126	MAPKAPK2	1426648_at	16184	-0.392	-0.3709	No
127	HOXD13	1422239_at 1440626_at	16192	-0.393	-0.3685	No
128	PHF12	1434922_at 1453579_at	16518	-0.422	-0.3805	No
129	IL17B	1431693_a_at	16523	-0.423	-0.3777	No
130	ABR	1433477_at	16610	-0.430	-0.3786	No
131	MYO18B	1431813_at	16612	-0.430	-0.3757	No
132	AQP2	1418903_at	16686	-0.437	-0.3760	No
133	LRRTM4	1437214_at 1455937_at	16826	-0.451	-0.3792	No
134	TES	1424246_a_at 1440649_at 1460378_a_at	16923	-0.461	-0.3804	No
135	ITGA7	1418393_a_at	16991	-0.468	-0.3802	No
136	ARPC4	1423588_at 1423589_at	16995	-0.468	-0.3771	No
137	INSM1	1421399_at 1455865_at	17027	-0.471	-0.3752	No
138	DHH	1422127_at 1434959_at	17062	-0.475	-0.3734	No
139	JPH2	1421453_at 1455404_at	17244	-0.494	-0.3783	No
140	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17324	-0.502	-0.3784	No
141	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	17373	-0.508	-0.3771	No
142	NPPA	1456062_at	17376	-0.509	-0.3736	No
143	GRK6	1437436_s_at 1450480_a_at 1451672_at	17448	-0.516	-0.3733	No
144	SLC4A3	1418485_at 1453687_at	17682	-0.543	-0.3802	No
145	LDHA	1419737_a_at	17749	-0.550	-0.3794	No
146	MYL6	1435041_at	17753	-0.551	-0.3757	No
147	HOXB4	1451761_at 1460379_at	17824	-0.559	-0.3750	No
148	HOXC5	1439885_at 1450832_at 1456301_at	17858	-0.564	-0.3725	No
149	ACTG2	1422340_a_at	17989	-0.581	-0.3744	No
150	PRDM1	1420425_at 1444997_at	18069	-0.593	-0.3739	No
151	CFL1	1448346_at 1455138_x_at	18162	-0.606	-0.3739	No
152	RSU1	1419259_at	18613	-0.669	-0.3899	No
153	DUSP5	1437199_at	18806	-0.699	-0.3939	No
154	H3F3A	1423263_at 1442087_at	18844	-0.705	-0.3906	No
155	CSNK1E	1417175_at 1417176_at 1435373_at	18902	-0.715	-0.3883	No
156	ATF4	1438992_x_at 1439258_at 1448135_at	19011	-0.731	-0.3881	No
157	HOXA5	1443803_x_at 1448926_at	19187	-0.762	-0.3908	No
158	FGF8	1451882_a_at	19222	-0.771	-0.3870	No
159	GNG8	1457755_at	19516	-0.824	-0.3947	No
160	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	19632	-0.847	-0.3941	No
161	GPR20	1440021_at	19906	-0.909	-0.4003	Yes
162	EGR3	1421486_at 1436329_at	19914	-0.912	-0.3942	Yes
163	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	20044	-0.943	-0.3935	Yes
164	LSP1	1417756_a_at	20241	-0.994	-0.3956	Yes
165	RUNDC1	1454829_at	20295	-1.003	-0.3910	Yes
166	ACTA1	1427735_a_at	20375	-1.018	-0.3875	Yes
167	COL1A2	1446326_at 1450857_a_at	20411	-1.028	-0.3819	Yes
168	TITF1	1422346_at	20446	-1.035	-0.3763	Yes
169	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20490	-1.047	-0.3709	Yes
170	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	20515	-1.053	-0.3646	Yes
171	SLC7A1	1421533_at 1454991_at 1454992_at	20601	-1.077	-0.3610	Yes
172	ACTN1	1427385_s_at 1428585_at 1452415_at	20612	-1.081	-0.3539	Yes
173	UNC84B	1433832_at 1439238_at	20719	-1.121	-0.3509	Yes
174	FST	1421365_at 1434458_at	20913	-1.213	-0.3513	Yes
175	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	20914	-1.213	-0.3428	Yes
176	STAT5B	1422102_a_at 1422103_a_at	20958	-1.236	-0.3362	Yes
177	NNAT	1423506_a_at	21018	-1.263	-0.3300	Yes
178	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	21126	-1.322	-0.3257	Yes
179	GADD45G	1453851_a_at	21192	-1.365	-0.3191	Yes
180	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	21406	-1.564	-0.3180	Yes
181	BDNF	1422168_a_at 1422169_a_at	21424	-1.580	-0.3077	Yes
182	DMPK	1422989_a_at 1434944_at	21442	-1.597	-0.2973	Yes
183	MYADM	1423321_at 1439389_s_at	21468	-1.623	-0.2871	Yes
184	SVIL	1427662_at 1460694_s_at 1460735_at	21485	-1.643	-0.2763	Yes
185	SIPA1	1416206_at	21548	-1.717	-0.2672	Yes
186	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	21616	-1.853	-0.2573	Yes
187	RERE	1454670_at	21641	-1.906	-0.2450	Yes
188	FLNA	1426677_at	21670	-1.984	-0.2325	Yes
189	JUNB	1415899_at	21672	-1.992	-0.2186	Yes
190	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21677	-2.002	-0.2047	Yes
191	DUSP2	1450698_at	21696	-2.054	-0.1912	Yes
192	RASSF2	1428392_at 1444889_at	21715	-2.124	-0.1771	Yes
193	FOXP3	1420765_a_at 1457082_at	21728	-2.176	-0.1625	Yes
194	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	21796	-2.538	-0.1478	Yes
195	CNN2	1450981_at	21853	-3.054	-0.1290	Yes
196	FOS	1423100_at	21901	-3.644	-0.1056	Yes
197	NR4A1	1416505_at	21917	-3.996	-0.0783	Yes
198	EGR1	1417065_at	21922	-4.993	-0.0436	Yes
199	EGR2	1427682_a_at 1427683_at	21930	-6.298	0.0002	Yes