Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_C
Enrichment Score (ES)	-0.47687668
Normalized Enrichment Score (NES)	-1.9887105
Nominal p-value	0.0
FDR q-value	0.007140411
FWER p-Value	0.011

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LDB3	1416752_at 1433783_at 1451999_at	153	2.061	0.0085	No
2	ROCK2	1423592_at 1451041_at	175	1.980	0.0225	No
3	CTNND1	1422450_at 1437448_s_at 1445830_at	291	1.690	0.0300	No
4	EML4	1429612_at 1447838_x_at	316	1.655	0.0414	No
5	COL8A1	1418440_at 1418441_at 1442794_at 1447819_x_at 1455627_at	382	1.598	0.0505	No
6	MATR3	1434888_a_at 1438368_a_at 1441272_at 1450874_at 1458508_at	536	1.408	0.0541	No
7	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	578	1.356	0.0625	No
8	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	864	1.161	0.0581	No
9	YWHAZ	1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at	986	1.098	0.0609	No
10	MEIS1	1440431_at 1443260_at 1445773_at 1450992_a_at 1459423_at 1459512_at	1047	1.075	0.0662	No
11	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	1077	1.067	0.0730	No
12	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	1251	1.019	0.0727	No
13	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	1339	1.001	0.0763	No
14	RASD2	1427343_at 1427344_s_at 1458433_at	1358	0.999	0.0830	No
15	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	1562	0.956	0.0809	No
16	VCL	1416156_at 1416157_at 1445256_at	1706	0.924	0.0813	No
17	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	1909	0.877	0.0786	No
18	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	2233	0.801	0.0698	No
19	DUSP10	1417163_at 1417164_at	2241	0.799	0.0756	No
20	BCAS3	1423528_at 1428454_at 1457817_at 1458557_at	2270	0.794	0.0803	No
21	POU3F4	1422164_at 1422165_at	2436	0.757	0.0784	No
22	SCOC	1416267_at 1430999_a_at	2546	0.731	0.0789	No
23	RHOJ	1418892_at 1444982_at	2586	0.723	0.0826	No
24	EMILIN2	1435264_at	2679	0.704	0.0837	No
25	CYR61	1416039_x_at 1417848_at 1417849_at 1438133_a_at 1442340_x_at 1457823_at 1459462_at	3095	0.628	0.0694	No
26	DVL3	1420457_at	4143	0.479	0.0249	No
27	TGFB1I1	1418136_at	4236	0.468	0.0242	No
28	HOXA3	1427433_s_at 1441070_at 1452421_at	4404	0.451	0.0199	No
29	PDLIM7	1417959_at 1428319_at 1443785_x_at	4843	0.405	0.0029	No
30	PDLIM4	1417928_at	4875	0.403	0.0045	No
31	PPP2R3A	1455198_a_at	4903	0.400	0.0063	No
32	AOC3	1449396_at	4968	0.394	0.0063	No
33	TANK	1421640_a_at 1441513_at 1459668_at	5024	0.388	0.0067	No
34	SSH3	1447929_at	5539	0.341	-0.0143	No
35	ITGB1BP2	1423238_at	5641	0.332	-0.0165	No
36	CKM	1417614_at	5769	0.321	-0.0199	No
37	GGN	1445278_at	6058	0.295	-0.0309	No
38	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	6184	0.285	-0.0345	No
39	CA3	1430584_s_at 1449434_at 1453588_at 1460256_at	6685	0.247	-0.0556	No
40	TADA3L	1417467_a_at 1448719_at	6696	0.247	-0.0542	No
41	ITGB6	1422983_at 1432281_a_at	6930	0.228	-0.0631	No
42	SRF	1418255_s_at 1418256_at	6937	0.228	-0.0617	No
43	HOXB5	1418415_at	7108	0.215	-0.0679	No
44	SRD5A2	1422960_at	7114	0.215	-0.0665	No
45	MCAM	1416357_a_at	7313	0.201	-0.0741	No
46	PRKAB2	1435874_at 1435875_at 1442001_at	7698	0.174	-0.0904	No
47	EFHD1	1448507_at	7770	0.170	-0.0924	No
48	MYL9	1452670_at	8147	0.143	-0.1086	No
49	AAK1	1420026_at 1435038_s_at 1441782_at	8378	0.128	-0.1182	No
50	MYLK	1425504_at 1425505_at 1425506_at	8406	0.126	-0.1185	No
51	RRM1	1415878_at 1440073_at 1448127_at	8646	0.111	-0.1286	No
52	KCTD15	1435339_at	8679	0.108	-0.1293	No
53	CFL2	1418066_at 1418067_at 1431432_at	8810	0.101	-0.1345	No
54	MRVI1	1422245_a_at 1459665_s_at	8868	0.098	-0.1363	No
55	DSTN	1417124_at	9007	0.089	-0.1420	No
56	NR2F1	1418157_at 1422412_x_at	9033	0.087	-0.1425	No
57	STARD13	1452604_at	9707	0.045	-0.1731	No
58	EGR4	1449977_at	10167	0.015	-0.1941	No
59	TAGLN	1423505_at	10169	0.015	-0.1940	No
60	MYH11	1418122_at 1448962_at	10445	-0.002	-0.2066	No
61	ASB2	1428444_at 1436259_at	10470	-0.004	-0.2077	No
62	PLN	1423359_at 1450952_at 1460332_at	10580	-0.010	-0.2126	No
63	MRGPRF	1425894_at	10677	-0.016	-0.2169	No
64	RNF39	1440912_at 1441793_at	10686	-0.017	-0.2171	No
65	KCNMB1	1421400_at 1421401_at	10696	-0.017	-0.2174	No
66	IGF2AS	1427394_at	10720	-0.018	-0.2184	No
67	MUS81	1431885_a_at 1450432_s_at	10736	-0.019	-0.2189	No
68	TRIM46	1460568_at	10824	-0.026	-0.2227	No
69	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	10942	-0.035	-0.2278	No
70	TNNC1	1418370_at	10996	-0.038	-0.2300	No
71	TCF2	1421224_a_at 1441484_at 1451687_a_at	11090	-0.044	-0.2339	No
72	FHL2	1419184_a_at	11115	-0.045	-0.2347	No
73	KCNK3	1425341_at 1425342_a_at 1426058_a_at	11167	-0.048	-0.2366	No
74	MITF	1422025_at 1455214_at	11218	-0.052	-0.2386	No
75	AKAP12	1419706_a_at 1458235_at	11231	-0.053	-0.2387	No
76	ACTR3	1426392_a_at 1434968_a_at 1452051_at	11725	-0.083	-0.2607	No
77	LIN28	1437752_at	11747	-0.084	-0.2611	No
78	NKX6-2	1427420_at	12091	-0.104	-0.2760	No
79	PLCB3	1448661_at	12247	-0.113	-0.2823	No
80	DAPK3	1423446_at 1456496_at	12501	-0.130	-0.2929	No
81	ZFHX1B	1422748_at 1434298_at 1442393_at 1445518_at 1454200_at 1456389_at	12573	-0.135	-0.2952	No
82	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	12619	-0.137	-0.2962	No
83	ASPA	1418472_at	12647	-0.138	-0.2964	No
84	TAZ	1416207_at 1453785_at	12737	-0.145	-0.2994	No
85	GFPT2	1418753_at	12925	-0.157	-0.3068	No
86	FGFRL1	1447878_s_at 1451912_a_at	12979	-0.160	-0.3081	No
87	NKX2-2	1421112_at	13380	-0.186	-0.3250	No
88	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	13585	-0.200	-0.3329	No
89	LTBP1	1419786_at 1440678_at 1446232_at 1447547_at 1448870_at 1457852_at 1458739_at	13621	-0.202	-0.3330	No
90	FOSL1	1417487_at 1417488_at	13631	-0.203	-0.3318	No
91	NPAS2	1421036_at 1421037_at	13829	-0.217	-0.3393	No
92	PFN1	1449018_at	13989	-0.227	-0.3449	No
93	FOSB	1422134_at	14066	-0.232	-0.3466	No
94	PNKP	1416378_at	14072	-0.233	-0.3451	No
95	CNN1	1417917_at	14273	-0.247	-0.3524	No
96	POPDC2	1417806_at	14409	-0.256	-0.3567	No
97	FOXE3	1422393_at	14544	-0.266	-0.3608	No
98	RBBP7	1415775_at 1456227_x_at	14920	-0.294	-0.3758	No
99	HOXD10	1418606_at	15240	-0.318	-0.3881	No
100	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	15302	-0.322	-0.3884	No
101	MYL7	1449071_at	15574	-0.342	-0.3983	No
102	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	15670	-0.350	-0.4000	No
103	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	15686	-0.351	-0.3981	No
104	KRTCAP2	1417058_a_at 1417059_at	16068	-0.382	-0.4127	No
105	MAP1A	1460566_at	16104	-0.386	-0.4114	No
106	PHF12	1434922_at 1453579_at	16518	-0.422	-0.4272	No
107	IL17B	1431693_a_at	16523	-0.423	-0.4242	No
108	MYO18B	1431813_at	16612	-0.430	-0.4250	No
109	DLL1	1419204_at	16966	-0.465	-0.4377	No
110	ITGA7	1418393_a_at	16991	-0.468	-0.4352	No
111	ARPC4	1423588_at 1423589_at	16995	-0.468	-0.4318	No
112	TUFT1	1416689_at 1444694_at	17058	-0.475	-0.4311	No
113	JPH2	1421453_at 1455404_at	17244	-0.494	-0.4359	No
114	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17324	-0.502	-0.4357	No
115	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	17373	-0.508	-0.4341	No
116	GRK6	1437436_s_at 1450480_a_at 1451672_at	17448	-0.516	-0.4336	No
117	LMCD1	1424596_s_at	17528	-0.524	-0.4332	No
118	DEFB129	1440957_at	17548	-0.527	-0.4301	No
119	MYL6	1435041_at	17753	-0.551	-0.4354	No
120	HOXB4	1451761_at 1460379_at	17824	-0.559	-0.4343	No
121	ACTG2	1422340_a_at	17989	-0.581	-0.4375	No
122	DNAJB4	1431734_a_at 1439524_at 1443611_at 1451177_at	18117	-0.600	-0.4388	No
123	CFL1	1448346_at 1455138_x_at	18162	-0.606	-0.4362	No
124	SLC2A4	1415958_at 1415959_at	18487	-0.650	-0.4462	No
125	RSU1	1419259_at	18613	-0.669	-0.4469	No
126	DUSP5	1437199_at	18806	-0.699	-0.4505	No
127	OSM	1438767_at	18905	-0.715	-0.4496	No
128	HOXA5	1443803_x_at 1448926_at	19187	-0.762	-0.4567	No
129	RAB30	1426452_a_at	19627	-0.847	-0.4705	Yes
130	SPAG7	1433940_at	19631	-0.847	-0.4642	Yes
131	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	19632	-0.847	-0.4578	Yes
132	LCP1	1415983_at 1448160_at	19895	-0.906	-0.4630	Yes
133	GPR20	1440021_at	19906	-0.909	-0.4566	Yes
134	EGR3	1421486_at 1436329_at	19914	-0.912	-0.4500	Yes
135	ACVR1	1416786_at 1416787_at 1448460_at 1457551_at	20023	-0.938	-0.4479	Yes
136	RUNDC1	1454829_at	20295	-1.003	-0.4528	Yes
137	ACTA1	1427735_a_at	20375	-1.018	-0.4487	Yes
138	COL1A2	1446326_at 1450857_a_at	20411	-1.028	-0.4426	Yes
139	TITF1	1422346_at	20446	-1.035	-0.4363	Yes
140	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20490	-1.047	-0.4304	Yes
141	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	20515	-1.053	-0.4235	Yes
142	SLC7A1	1421533_at 1454991_at 1454992_at	20601	-1.077	-0.4193	Yes
143	ACTN1	1427385_s_at 1428585_at 1452415_at	20612	-1.081	-0.4116	Yes
144	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	20654	-1.094	-0.4052	Yes
145	UNC84B	1433832_at 1439238_at	20719	-1.121	-0.3997	Yes
146	USP52	1426700_a_at	20929	-1.221	-0.4001	Yes
147	ARHGAP1	1424307_at 1451309_at	20932	-1.222	-0.3909	Yes
148	STAT5B	1422102_a_at 1422103_a_at	20958	-1.236	-0.3827	Yes
149	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	21013	-1.260	-0.3757	Yes
150	CAP1	1417461_at 1417462_at	21047	-1.281	-0.3675	Yes
151	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	21126	-1.322	-0.3611	Yes
152	GADD45G	1453851_a_at	21192	-1.365	-0.3538	Yes
153	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	21320	-1.472	-0.3485	Yes
154	DMPK	1422989_a_at 1434944_at	21442	-1.597	-0.3420	Yes
155	SIPA1	1416206_at	21548	-1.717	-0.3339	Yes
156	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	21616	-1.853	-0.3230	Yes
157	FLNA	1426677_at	21670	-1.984	-0.3104	Yes
158	JUNB	1415899_at	21672	-1.992	-0.2954	Yes
159	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21677	-2.002	-0.2805	Yes
160	DUSP2	1450698_at	21696	-2.054	-0.2658	Yes
161	RASSF2	1428392_at 1444889_at	21715	-2.124	-0.2506	Yes
162	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	21796	-2.538	-0.2351	Yes
163	RGS3	1425701_a_at 1427648_at 1449516_a_at 1454026_a_at	21839	-2.911	-0.2150	Yes
164	CNN2	1450981_at	21853	-3.054	-0.1925	Yes
165	IER2	1416442_at	21874	-3.262	-0.1688	Yes
166	FOS	1423100_at	21901	-3.644	-0.1425	Yes
167	DUSP6	1415834_at	21907	-3.749	-0.1144	Yes
168	NR4A1	1416505_at	21917	-3.996	-0.0846	Yes
169	EGR1	1417065_at	21922	-4.993	-0.0471	Yes
170	EGR2	1427682_a_at 1427683_at	21930	-6.298	0.0002	Yes