Details for gene set V$RFX1

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$RFX1_01
Enrichment Score (ES)	-0.4022336
Normalized Enrichment Score (NES)	-1.6756175
Nominal p-value	0.0
FDR q-value	0.038941216
FWER p-Value	0.369

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	73	2.425	0.0210	No
2	ACBD3	1426635_at 1428668_at 1452137_at 1456316_a_at	321	1.650	0.0263	No
3	GSN	1415812_at 1436991_x_at 1437171_x_at 1441225_at 1456312_x_at 1456568_at 1456569_x_at	353	1.622	0.0412	No
4	TPCN1	1434930_at 1451771_at 1451772_at	672	1.287	0.0395	No
5	ARL4A	1425411_at 1431429_a_at 1435092_at	741	1.246	0.0489	No
6	IDS	1421216_a_at 1427812_at 1427813_at 1434751_at 1450166_at 1455481_at	1126	1.051	0.0418	No
7	HMGCS1	1433443_a_at 1433444_at 1433445_x_at 1433446_at 1441536_at	1196	1.033	0.0490	No
8	CNOT10	1433882_at 1453654_at 1459756_at 1459757_x_at	1302	1.010	0.0544	No
9	DFNB31	1432555_at 1436485_s_at 1436486_x_at 1442507_at 1447438_at	1350	1.000	0.0623	No
10	PARK2	1420755_a_at 1426135_a_at 1449975_a_at	1445	0.980	0.0678	No
11	TRERF1	1444654_at	1507	0.967	0.0747	No
12	PPOX	1416618_at 1441862_at 1448065_at	2210	0.806	0.0506	No
13	MDH1	1434319_at 1436834_x_at 1438338_at 1448172_at 1454925_x_at	2326	0.781	0.0531	No
14	SNF1LK	1419766_at 1459601_at	2335	0.779	0.0606	No
15	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	2454	0.753	0.0627	No
16	ARHGAP15	1429881_at 1435959_at 1441650_at	2927	0.660	0.0477	No
17	ADM	1416077_at 1447839_x_at	3456	0.569	0.0292	No
18	EFNA1	1416895_at 1448510_at	3861	0.514	0.0158	No
19	MDS1	1422295_at	3917	0.508	0.0183	No
20	SRR	1419664_at 1438549_a_at 1438550_x_at 1453421_at 1455045_at 1458393_at	4071	0.489	0.0162	No
21	MAGED1	1450062_a_at	4433	0.447	0.0041	No
22	ANXA1	1448213_at	4607	0.429	0.0005	No
23	BTRC	1417325_at 1425680_a_at 1443142_at 1446925_at 1447120_at 1456780_at	5087	0.382	-0.0177	No
24	HAT1	1428061_at	5218	0.370	-0.0199	No
25	NPM1	1415839_a_at 1420267_at 1420268_x_at 1420269_at 1432416_a_at	5290	0.363	-0.0195	No
26	MYH8	1426650_at	5434	0.349	-0.0226	No
27	TSGA10	1436045_at 1447283_at	5470	0.347	-0.0207	No
28	PAK6	1445475_at 1455200_at	5533	0.342	-0.0201	No
29	SEP15	1448903_at 1454525_at	5548	0.340	-0.0173	No
30	FXYD6	1417343_at	5856	0.311	-0.0283	No
31	PIGA	1427305_at 1453497_a_at	5995	0.301	-0.0316	No
32	RFC5	1452917_at	6006	0.299	-0.0291	No
33	GGN	1445278_at	6058	0.295	-0.0285	No
34	ZFP36L2	1437626_at 1439054_at 1451034_at	6185	0.285	-0.0314	No
35	MYO1C	1419648_at 1419649_s_at 1449550_at 1449551_at	6378	0.271	-0.0375	No
36	PTDSS2	1426728_x_at 1429492_x_at 1434586_a_at 1434587_x_at 1439984_at 1443738_at 1450354_a_at 1453164_a_at 1458387_at 1460010_a_at	6397	0.269	-0.0356	No
37	BCL2L1	1420887_a_at 1420888_at 1426050_at 1426191_a_at	6603	0.252	-0.0425	No
38	VEGF	1420909_at 1451959_a_at	6760	0.242	-0.0472	No
39	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	6943	0.227	-0.0533	No
40	DNAH9	1442412_at 1457401_at	7354	0.198	-0.0701	No
41	MANEA	1455403_at	7523	0.187	-0.0760	No
42	MRPL10	1418112_at	7986	0.155	-0.0956	No
43	CTF1	1449093_at	8225	0.138	-0.1052	No
44	ADCK4	1448490_at	8228	0.138	-0.1039	No
45	SPA17	1417635_at	8433	0.124	-0.1120	No
46	WWOX	1416334_at 1431942_at 1431960_at 1438517_at 1442651_at 1446412_at	8497	0.120	-0.1137	No
47	TBPL1	1431415_a_at 1434907_at	8644	0.111	-0.1193	No
48	BIK	1420362_a_at 1420363_at 1449836_x_at	8733	0.105	-0.1223	No
49	XRCC1	1416587_a_at	8808	0.101	-0.1247	No
50	CFL2	1418066_at 1418067_at 1431432_at	8810	0.101	-0.1237	No
51	PRRX1	1425526_a_at 1425527_at 1425528_at 1432129_a_at 1439774_at 1458004_at	8921	0.094	-0.1278	No
52	B3GALT2	1423084_at 1437433_at 1437644_at	9061	0.086	-0.1333	No
53	MFN1	1426773_at 1449697_s_at	9235	0.075	-0.1405	No
54	PRICKLE1	1441663_at 1442172_at 1442400_at 1444759_at 1452249_at 1457637_at	9454	0.061	-0.1499	No
55	BOP1	1423264_at 1430491_at	9645	0.049	-0.1582	No
56	NLGN2	1455143_at 1460013_at	9692	0.046	-0.1598	No
57	PURA	1420628_at 1438219_at 1449934_at 1453783_at 1456898_at	9977	0.027	-0.1726	No
58	PTPRT	1421238_a_at 1439725_at 1447135_at 1450174_at	10093	0.019	-0.1777	No
59	PITX2	1424797_a_at 1450482_a_at	10173	0.014	-0.1812	No
60	FGR	1419526_at 1442804_at	10416	-0.000	-0.1923	No
61	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	10461	-0.003	-0.1943	No
62	GRIA1	1435239_at 1448972_at 1458285_at	10538	-0.008	-0.1977	No
63	TTC16	1455414_at	10750	-0.021	-0.2072	No
64	STMN4	1418105_at	10758	-0.021	-0.2073	No
65	ASB7	1435010_at 1438744_at 1446319_at 1450363_at	10887	-0.031	-0.2129	No
66	RIT2	1421779_at 1448125_at 1460166_at	10946	-0.035	-0.2152	No
67	POLR3H	1424227_at 1424228_at	10954	-0.035	-0.2151	No
68	RTDR1	1431601_at	11015	-0.039	-0.2175	No
69	HSPG2	1418669_at 1418670_s_at	11021	-0.040	-0.2173	No
70	SLC8A3	1440962_at 1450311_at	11035	-0.041	-0.2175	No
71	BNC2	1438861_at 1440593_at 1459132_at	11271	-0.055	-0.2278	No
72	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	11412	-0.063	-0.2336	No
73	STOML2	1448774_at	11585	-0.073	-0.2407	No
74	SMCR7	1434072_at	11645	-0.077	-0.2427	No
75	BRD2	1423502_at 1437210_a_at	11867	-0.090	-0.2519	No
76	IGF1	1419519_at 1436497_at 1437401_at 1452014_a_at	11916	-0.094	-0.2532	No
77	MDH1B	1429842_at	11917	-0.094	-0.2522	No
78	DPAGT1	1448549_a_at	11950	-0.096	-0.2527	No
79	TBX5	1425694_at 1425695_at	12080	-0.103	-0.2576	No
80	TEKT2	1418484_at	12161	-0.108	-0.2602	No
81	PLCB3	1448661_at	12247	-0.113	-0.2630	No
82	SH3GL3	1432103_a_at	12281	-0.115	-0.2633	No
83	UBXD3	1426007_a_at 1451906_at 1456385_x_at 1457581_at	12453	-0.127	-0.2699	No
84	GPX1	1460671_at	12601	-0.136	-0.2753	No
85	PSMF1	1424369_at 1424370_s_at 1424371_at 1451337_at	12740	-0.145	-0.2802	No
86	E2F5	1417444_at 1447625_at 1460207_s_at	12973	-0.159	-0.2892	No
87	EFNB3	1423085_at	13056	-0.164	-0.2914	No
88	PDCL2	1432503_a_at	13107	-0.168	-0.2920	No
89	GRM3	1430136_at	13566	-0.198	-0.3110	No
90	ABCD1	1418838_at	13684	-0.207	-0.3143	No
91	GTF3C4	1434320_at 1438692_at	13703	-0.208	-0.3130	No
92	HSF1	1424622_at	13898	-0.221	-0.3197	No
93	DRP2	1440452_at 1441224_at 1441542_at	14012	-0.228	-0.3226	No
94	KIF17	1419826_at 1419827_s_at 1422762_at	14056	-0.232	-0.3223	No
95	HOXA10	1431475_a_at 1446408_at	14080	-0.233	-0.3210	No
96	DDX41	1423814_at	14085	-0.234	-0.3188	No
97	NME5	1422727_at	14114	-0.236	-0.3177	No
98	HDAC9	1421306_a_at 1434572_at	14480	-0.261	-0.3319	No
99	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	14533	-0.265	-0.3316	No
100	PPP2R2B	1426621_a_at	14684	-0.278	-0.3357	No
101	SMAD5	1421047_at 1433641_at 1451873_a_at	14712	-0.279	-0.3341	No
102	MIR16	1418444_a_at	14871	-0.290	-0.3385	No
103	SHC3	1450326_at	14912	-0.293	-0.3374	No
104	AP1M1	1416307_at 1459832_s_at	14974	-0.298	-0.3372	No
105	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	15302	-0.322	-0.3490	No
106	PVRL4	1428701_at 1451690_a_at	15474	-0.335	-0.3534	No
107	PRKCSH	1416339_a_at	15610	-0.344	-0.3562	No
108	CACNA2D3	1419225_at	15671	-0.350	-0.3554	No
109	SNRPF	1428672_at	15779	-0.358	-0.3567	No
110	RNF25	1442108_at 1448674_at	15870	-0.366	-0.3572	No
111	PSCD2	1450103_a_at	16071	-0.383	-0.3625	No
112	GALNT14	1453630_at	16233	-0.396	-0.3659	No
113	GJB1	1448766_at 1448767_s_at	16687	-0.437	-0.3824	No
114	WDR17	1435392_at 1453537_a_at	16782	-0.446	-0.3822	No
115	LMO3	1455754_at	17198	-0.489	-0.3964	No
116	BBS2	1424478_at	17327	-0.502	-0.3972	Yes
117	ZRANB1	1415712_at 1427200_at 1436228_at	17351	-0.505	-0.3932	Yes
118	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	17445	-0.516	-0.3923	Yes
119	KCNJ2	1450503_at	17497	-0.521	-0.3894	Yes
120	PES1	1416172_at 1416173_at	17623	-0.536	-0.3897	Yes
121	CALB2	1451129_at	17791	-0.555	-0.3918	Yes
122	IGSF8	1460675_at	17864	-0.565	-0.3894	Yes
123	FIBCD1	1435482_at	17867	-0.565	-0.3838	Yes
124	ACTG2	1422340_a_at	17989	-0.581	-0.3835	Yes
125	F2RL1	1448931_at	18136	-0.602	-0.3842	Yes
126	GABARAPL2	1423187_at 1441376_at 1444956_at 1459477_at	18332	-0.627	-0.3869	Yes
127	RASGEF1A	1429316_at 1435218_at	18432	-0.642	-0.3850	Yes
128	CARS	1427330_at 1452394_at	18639	-0.672	-0.3877	Yes
129	FILIP1	1436650_at 1444075_at	18749	-0.692	-0.3857	Yes
130	SDCBP2	1424090_at	18794	-0.697	-0.3807	Yes
131	PACRG	1428751_at	18820	-0.700	-0.3748	Yes
132	ZCCHC8	1423755_at 1441639_at	18832	-0.702	-0.3683	Yes
133	BMP6	1450759_at 1459947_at	18849	-0.705	-0.3619	Yes
134	GRIK5	1418784_at	19045	-0.737	-0.3635	Yes
135	SOX3	1435192_at 1450485_at	19091	-0.746	-0.3580	Yes
136	CPEB2	1434272_at 1443017_at 1458518_at	19218	-0.770	-0.3561	Yes
137	ZFYVE1	1435071_at 1435072_at	19259	-0.777	-0.3501	Yes
138	TCF12	1421908_a_at 1427670_a_at 1438762_at 1439209_at 1439619_at 1443012_at 1444620_at 1445093_at 1445133_at 1457524_at 1458337_at	19284	-0.782	-0.3433	Yes
139	CBX8	1419198_at 1419199_at	19304	-0.785	-0.3363	Yes
140	DDX17	1437773_x_at 1439037_at 1452155_a_at	19502	-0.822	-0.3371	Yes
141	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	19700	-0.861	-0.3375	Yes
142	CAPN3	1426043_a_at 1433681_x_at	19726	-0.868	-0.3299	Yes
143	FZD1	1422985_at 1437284_at	19735	-0.869	-0.3215	Yes
144	RRAGA	1428905_at	19815	-0.887	-0.3162	Yes
145	CDIPT	1423657_at 1436715_s_at	19938	-0.918	-0.3126	Yes
146	BCAP31	1451049_at 1456279_a_at	20046	-0.944	-0.3080	Yes
147	TITF1	1422346_at	20446	-1.035	-0.3160	Yes
148	DHX8	1426629_at	20481	-1.045	-0.3070	Yes
149	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20490	-1.047	-0.2969	Yes
150	TRAF4	1416571_at 1460642_at	20504	-1.050	-0.2869	Yes
151	PHF15	1430081_at 1455345_at	20520	-1.054	-0.2770	Yes
152	HS2ST1	1422739_at 1440905_at 1450729_at 1450730_at	20690	-1.106	-0.2736	Yes
153	GBF1	1415709_s_at 1415757_at 1432677_at 1438207_at	20847	-1.177	-0.2690	Yes
154	NCOA5	1424055_at 1456997_at	20887	-1.195	-0.2587	Yes
155	TUSC3	1421662_a_at 1458568_at	21016	-1.262	-0.2519	Yes
156	PRDM4	1452208_at	21174	-1.353	-0.2455	Yes
157	TBC1D16	1435763_at 1442149_at	21183	-1.359	-0.2322	Yes
158	SIX1	1427277_at	21295	-1.456	-0.2227	Yes
159	PIK3R4	1460352_s_at	21312	-1.468	-0.2087	Yes
160	NRGN	1423231_at	21361	-1.514	-0.1957	Yes
161	MYOHD1	1451183_at 1459265_at	21391	-1.548	-0.1814	Yes
162	HECTD1	1424141_at 1438039_at	21395	-1.553	-0.1659	Yes
163	BDNF	1422168_a_at 1422169_a_at	21424	-1.580	-0.1513	Yes
164	TMEM28	1435138_at 1443271_at 1445869_at 1446912_at 1459483_at	21452	-1.604	-0.1365	Yes
165	HM13	1417287_at 1428855_at 1428856_at 1438456_at 1438865_at 1455631_at	21735	-2.196	-0.1273	Yes
166	ST13	1416851_at 1442775_at 1460193_at	21782	-2.418	-0.1051	Yes
167	DUSP4	1428834_at	21811	-2.663	-0.0796	Yes
168	SALL2	1416638_at	21892	-3.581	-0.0473	Yes
169	NAB2	1417930_at	21921	-4.892	0.0006	Yes