Details for gene set BRENTANI

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	BRENTANI_SIGNALING
Enrichment Score (ES)	-0.4524288
Normalized Enrichment Score (NES)	-1.8930031
Nominal p-value	0.0
FDR q-value	0.06707674
FWER p-Value	0.413

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MAP3K12	1417115_at 1438908_at 1456565_s_at	732	3.365	-0.0208	No
2	AXIN1	1426966_at 1426967_at 1441029_at	1323	2.648	-0.0377	No
3	NF1	1438067_at 1441523_at 1443097_at 1452525_a_at	1365	2.618	-0.0296	No
4	TNFRSF10B	1421296_at 1422344_s_at	1534	2.459	-0.0279	No
5	ITGA9	1420860_at 1450029_s_at 1460285_at	1578	2.422	-0.0206	No
6	MAPK10	1437195_x_at 1448342_at 1458002_at 1458062_at 1458513_at	1671	2.356	-0.0158	No
7	NCK1	1421487_a_at 1424543_at 1447271_at	1960	2.152	-0.0208	No
8	SFN	1448612_at	2270	1.991	-0.0274	No
9	PDPK1	1415729_at 1416501_at 1459775_at 1459776_x_at	2420	1.929	-0.0269	No
10	WNT1	1425377_at	2583	1.866	-0.0272	No
11	ITGA7	1418393_a_at	2586	1.866	-0.0201	No
12	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	2937	1.741	-0.0295	No
13	IL13	1420802_at	3078	1.697	-0.0295	No
14	TANK	1421640_a_at 1441513_at 1459668_at	3295	1.637	-0.0331	No
15	PTCH2	1422655_at	3498	1.565	-0.0364	No
16	ITGB5	1417533_a_at 1417534_at 1456133_x_at 1456195_x_at	3653	1.520	-0.0377	No
17	CXCL12	1417574_at 1439084_at 1448823_at	3678	1.513	-0.0330	No
18	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	3687	1.511	-0.0276	No
19	GRB14	1417673_at 1457526_at	3777	1.487	-0.0260	No
20	TIAM1	1418057_at 1444373_at 1453887_a_at	3855	1.464	-0.0239	No
21	IFNB1	1422305_at	4139	1.383	-0.0316	No
22	RAP1A	1424139_at	4179	1.374	-0.0282	No
23	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	4425	1.307	-0.0344	No
24	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	4454	1.298	-0.0308	No
25	IFNAR2	1427691_a_at 1440169_x_at 1451462_a_at	4686	1.236	-0.0366	No
26	IFNG	1425947_at	5016	1.158	-0.0473	No
27	MAS1	1422936_at 1447026_at	5058	1.150	-0.0448	No
28	TNF	1419607_at	5329	1.099	-0.0530	No
29	MAP3K7IP1	1426898_at 1447692_x_at	5350	1.096	-0.0497	No
30	CXCL2	1449984_at	5436	1.080	-0.0495	No
31	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	5616	1.044	-0.0537	No
32	MAPK13	1448871_at	5732	1.020	-0.0551	No
33	RAN	1443131_at 1446819_at 1447478_at 1460551_at	5840	1.003	-0.0562	No
34	IL10	1450330_at	6230	0.937	-0.0705	No
35	IRS1	1423104_at	6234	0.936	-0.0670	No
36	MAPKAPK2	1426648_at	6416	0.901	-0.0719	No
37	MAP2K1	1416351_at	6572	0.873	-0.0757	No
38	ITGA2	1450501_at	7093	0.780	-0.0966	No
39	TNFSF4	1421744_at	7760	0.674	-0.1246	No
40	MAP2K2	1415974_at 1443436_at 1460636_at	7957	0.639	-0.1312	No
41	MAPK12	1447823_x_at 1449283_a_at	7998	0.632	-0.1306	No
42	SHC1	1422853_at 1422854_at	8026	0.627	-0.1295	No
43	JAK1	1433803_at 1433804_at 1433805_at	8069	0.620	-0.1290	No
44	MAPKAPK5	1417016_at 1439828_at	8180	0.604	-0.1318	No
45	VIPR1	1423004_at	8316	0.583	-0.1357	No
46	IL1B	1449399_a_at	8326	0.582	-0.1339	No
47	AKAP13	1430445_at 1433722_at 1436933_at 1439254_at 1440392_at 1440977_at 1443923_at 1445311_at 1447663_at	8527	0.548	-0.1410	No
48	ITGA1	1439713_at 1446569_at 1455251_at	8612	0.535	-0.1428	No
49	APC	1420956_at 1420957_at 1435543_at 1450056_at	8643	0.529	-0.1422	No
50	INHA	1422728_at	8763	0.512	-0.1457	No
51	ITGB3	1421511_at 1455257_at	9025	0.470	-0.1559	No
52	MAPK4	1435367_at	9077	0.461	-0.1565	No
53	ITGA3	1421997_s_at 1455158_at 1460305_at	9157	0.449	-0.1584	No
54	PTPRK	1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at	9250	0.435	-0.1609	No
55	ARHGEF16	1427386_at	9529	0.397	-0.1722	No
56	JAG2	1426430_at 1426431_at	9543	0.393	-0.1713	No
57	ITGA5	1423267_s_at 1423268_at 1457561_at 1458996_at	9682	0.373	-0.1762	No
58	SKIL	1422054_a_at 1452214_at	9827	0.348	-0.1815	No
59	MYD88	1419272_at	9908	0.336	-0.1839	No
60	AXL	1423586_at 1438621_x_at	10143	0.300	-0.1935	No
61	PTEN	1422553_at 1441593_at 1444325_at 1450655_at 1454722_at 1455728_at 1457493_at	10343	0.267	-0.2016	No
62	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	10669	0.219	-0.2157	No
63	AKT2	1421324_a_at 1424480_s_at 1455703_at	11192	0.139	-0.2391	No
64	MUSK	1450511_at	11206	0.138	-0.2392	No
65	MAP2K5	1417854_at 1430180_at 1453712_a_at 1455941_s_at	11341	0.117	-0.2449	No
66	ITGB1	1426918_at 1426919_at 1426920_x_at 1427771_x_at 1438119_at 1452545_a_at	11386	0.111	-0.2465	No
67	TRAF6	1421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at	11435	0.105	-0.2483	No
68	SUFU	1420848_at 1431713_at 1440004_at 1446489_at	11933	0.024	-0.2711	No
69	JAK3	1425750_a_at 1446515_at	11975	0.019	-0.2729	No
70	BTK	1422755_at	12023	0.011	-0.2750	No
71	MAPK9	1421876_at 1421877_at 1421878_at	12075	0.004	-0.2773	No
72	MAPK11	1421925_at 1421926_at	12080	0.003	-0.2775	No
73	YWHAE	1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at	12203	-0.016	-0.2831	No
74	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	12265	-0.026	-0.2858	No
75	ITGAX	1419128_at	12327	-0.039	-0.2884	No
76	HRAS	1422407_s_at 1424132_at	12431	-0.057	-0.2929	No
77	ITGB8	1436223_at	12842	-0.129	-0.3113	No
78	ATM	1421205_at 1428830_at	12862	-0.132	-0.3116	No
79	IGFBP1	1418918_at	12873	-0.134	-0.3116	No
80	CALM1	1417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at	12917	-0.142	-0.3130	No
81	GNB1	1417432_a_at 1425908_at 1454696_at 1459442_at	12974	-0.152	-0.3150	No
82	ITGB7	1418741_at	13003	-0.156	-0.3157	No
83	NRAS	1422688_a_at 1454060_a_at	13011	-0.158	-0.3154	No
84	MCC	1438081_at 1442741_at 1442892_at 1459524_at 1459752_at	13071	-0.169	-0.3175	No
85	BCR	1427265_at 1452368_at 1455564_at	13139	-0.179	-0.3199	No
86	IGFBP3	1423062_at 1458268_s_at	13172	-0.184	-0.3206	No
87	TNFRSF1B	1418099_at 1448951_at	13336	-0.213	-0.3273	No
88	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	13338	-0.213	-0.3265	No
89	IL15	1418219_at	13712	-0.280	-0.3426	No
90	IFNGR1	1443602_at 1448167_at	13745	-0.285	-0.3430	No
91	REL	1420710_at	14071	-0.338	-0.3566	No
92	ITGAV	1421198_at 1432296_a_at 1432678_at 1432679_at 1452784_at	14230	-0.368	-0.3625	No
93	ABL2	1445483_at 1447127_at	14290	-0.377	-0.3638	No
94	IL2RB	1417546_at 1448759_at 1459870_x_at	14387	-0.396	-0.3667	No
95	NOTCH4	1436901_at 1449146_at 1456263_at	14397	-0.398	-0.3655	No
96	MKNK1	1417630_at 1417631_at 1454119_at	14424	-0.404	-0.3652	No
97	ITGAM	1422046_at	14822	-0.484	-0.3816	No
98	ROS1	1425970_a_at	14929	-0.507	-0.3845	No
99	JAG1	1421105_at 1421106_at 1434070_at	15082	-0.540	-0.3894	No
100	ARHGEF12	1423902_s_at 1446965_at 1451159_at 1453853_a_at	15169	-0.557	-0.3913	No
101	MAP2K3	1425456_a_at 1451714_a_at	15187	-0.559	-0.3899	No
102	MAP3K8	1419208_at	15282	-0.580	-0.3920	No
103	SOS1	1421884_at 1421885_at 1421886_at	15572	-0.643	-0.4028	No
104	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	15672	-0.666	-0.4048	No
105	GRB7	1448227_at	15771	-0.685	-0.4067	No
106	WNT4	1450782_at	16069	-0.754	-0.4175	No
107	TYRO3	1425248_a_at 1425249_a_at	16134	-0.772	-0.4174	No
108	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	16226	-0.792	-0.4186	No
109	AXIN2	1421341_at 1436845_at	16310	-0.814	-0.4193	No
110	STAT3	1424272_at 1426587_a_at 1459961_a_at 1460700_at	16620	-0.890	-0.4301	No
111	DGKG	1419756_at 1431167_at 1449584_at	16929	-0.963	-0.4406	No
112	RGS16	1426037_a_at 1451452_a_at 1455265_a_at	17060	-0.990	-0.4427	No
113	TYK2	1417306_at	17157	-1.010	-0.4433	No
114	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	17336	-1.044	-0.4475	No
115	WNT2	1449425_at	17371	-1.055	-0.4450	No
116	PIK3CG	1422707_at 1422708_at	17475	-1.083	-0.4456	No
117	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	17587	-1.112	-0.4464	No
118	WNT5A	1436791_at 1448818_at 1456976_at	17591	-1.113	-0.4423	No
119	SMO	1427048_at 1427049_s_at 1442215_at	17644	-1.127	-0.4404	No
120	FYN	1417558_at 1441647_at 1448765_at	17777	-1.164	-0.4420	No
121	MPL	1421461_at 1451919_a_at	18005	-1.235	-0.4477	Yes
122	RALBP1	1417248_at 1448634_at	18047	-1.249	-0.4448	Yes
123	ERG	1425370_a_at 1440244_at	18155	-1.282	-0.4448	Yes
124	STAT6	1421708_a_at 1426353_at	18205	-1.300	-0.4421	Yes
125	PIK3C3	1425580_a_at	18232	-1.308	-0.4383	Yes
126	TTK	1442594_at 1449171_at	18264	-1.319	-0.4347	Yes
127	SRC	1423240_at 1450918_s_at	18385	-1.363	-0.4350	Yes
128	TNFSF13	1445227_at	18530	-1.417	-0.4362	Yes
129	ITGA4	1421194_at 1427615_at 1446350_at 1450155_at 1456498_at 1457376_at	18652	-1.472	-0.4361	Yes
130	ROCK1	1423444_at 1423445_at 1441162_at 1446518_at 1450994_at 1460729_at	18684	-1.488	-0.4318	Yes
131	ZAP70	1422701_at 1439749_at 1440178_x_at	18827	-1.548	-0.4324	Yes
132	STAT1	1420915_at 1440481_at 1450033_a_at 1450034_at	19065	-1.647	-0.4370	Yes
133	ARHGAP1	1424307_at 1451309_at	19191	-1.700	-0.4362	Yes
134	BIRC2	1418854_at	19444	-1.821	-0.4409	Yes
135	CXCL1	1419209_at 1441855_x_at 1457644_s_at	19452	-1.832	-0.4342	Yes
136	MAP3K14	1422999_at 1434364_at	19532	-1.872	-0.4306	Yes
137	IL12RB1	1418166_at	19558	-1.891	-0.4245	Yes
138	NOTCH3	1421964_at 1421965_s_at 1443300_at	19636	-1.951	-0.4206	Yes
139	MAP3K4	1421450_a_at 1447667_x_at 1450253_a_at 1459800_s_at	19710	-2.006	-0.4163	Yes
140	IL18R1	1421628_at	19719	-2.019	-0.4089	Yes
141	TRAF1	1423602_at 1445452_at	19721	-2.020	-0.4012	Yes
142	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	19751	-2.036	-0.3948	Yes
143	MAPK7	1418060_a_at	19752	-2.036	-0.3870	Yes
144	IRS2	1443969_at	19820	-2.094	-0.3821	Yes
145	ITGAE	1447541_s_at 1449216_at	19906	-2.171	-0.3777	Yes
146	IL6ST	1421239_at 1437303_at 1452843_at 1460295_s_at	19966	-2.222	-0.3719	Yes
147	ITGB4	1427387_a_at	20070	-2.313	-0.3678	Yes
148	CAMK4	1421941_at 1426167_a_at 1439843_at 1442822_at 1452572_at	20147	-2.379	-0.3621	Yes
149	TRAF3	1418587_at 1444758_at 1449149_at	20160	-2.389	-0.3535	Yes
150	ITGA6	1422444_at 1422445_at	20199	-2.417	-0.3460	Yes
151	DGKA	1418578_at	20214	-2.428	-0.3374	Yes
152	TNFRSF14	1452425_at	20608	-2.842	-0.3446	Yes
153	ILK	1449942_a_at	20645	-2.883	-0.3352	Yes
154	DGKQ	1437000_at	20797	-3.096	-0.3303	Yes
155	STAT5A	1421469_a_at 1450259_a_at	20852	-3.200	-0.3205	Yes
156	RELA	1419536_a_at	20889	-3.265	-0.3097	Yes
157	MAP3K3	1426686_s_at 1426687_at 1436522_at	21072	-3.604	-0.3043	Yes
158	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	21150	-3.752	-0.2934	Yes
159	RELB	1417856_at	21234	-3.907	-0.2823	Yes
160	MAP2K4	1426233_at 1442679_at 1451982_at	21293	-4.054	-0.2694	Yes
161	ITGB2	1450678_at	21367	-4.241	-0.2566	Yes
162	TNFRSF4	1420351_at	21431	-4.440	-0.2425	Yes
163	IQGAP2	1433885_at 1459894_at	21449	-4.503	-0.2260	Yes
164	RAF1	1416078_s_at 1425419_a_at	21451	-4.510	-0.2088	Yes
165	SH3BP2	1448328_at	21456	-4.518	-0.1917	Yes
166	STAT2	1421911_at 1450403_at	21604	-5.204	-0.1785	Yes
167	MAP2K6	1426850_a_at 1459292_at	21619	-5.264	-0.1590	Yes
168	VAV1	1422932_a_at	21645	-5.494	-0.1392	Yes
169	STAT5B	1422102_a_at 1422103_a_at	21715	-6.071	-0.1191	Yes
170	PTK2B	1434653_at 1442437_at 1442927_at	21724	-6.115	-0.0961	Yes
171	TNFRSF1A	1417291_at	21839	-8.146	-0.0701	Yes
172	IFNAR1	1442222_at 1449026_at	21889	-9.491	-0.0361	Yes
173	MAP2K7	1421416_at 1425393_a_at 1425512_at 1425513_at 1440442_at 1451736_a_at 1457182_at	21902	-9.953	0.0015	Yes