Details for gene set REACTOME_GENE

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	ATM_minus
GeneSet	REACTOME_GENE_EXPRESSION
Enrichment Score (ES)	0.46724564
Normalized Enrichment Score (NES)	2.0010335
Nominal p-value	0.0
FDR q-value	0.013910975
FWER p-Value	0.038

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EIF2S2	1417712_at 1417713_at 1441023_at 1448819_at 1448820_a_at 1456617_a_at	21	8.894	0.0384	Yes
2	SNRPA1	1417351_a_at 1417352_s_at 1417353_x_at	72	6.411	0.0645	Yes
3	TAF9	1422778_at 1451509_at	119	5.623	0.0873	Yes
4	RARS	1416312_at	141	5.484	0.1106	Yes
5	GARS	1423784_at	148	5.420	0.1343	Yes
6	NARS	1428666_at 1452866_at	160	5.330	0.1574	Yes
7	EIF2B1	1460730_at	165	5.299	0.1807	Yes
8	GTF2E2	1448884_at	200	5.075	0.2016	Yes
9	NUP43	1432187_at 1432188_s_at	281	4.640	0.2185	Yes
10	SF3A3	1423811_at	287	4.587	0.2386	Yes
11	NUP54	1432539_a_at 1433580_at 1438951_x_at 1447253_x_at 1459651_s_at	341	4.357	0.2554	Yes
12	CCAR1	1436156_at 1436157_at 1453319_at	484	3.944	0.2664	Yes
13	GTF2H2	1450701_a_at 1457818_at	546	3.794	0.2804	Yes
14	PHF5A	1424170_at	601	3.640	0.2940	Yes
15	GTF2B	1438066_at 1451135_at	726	3.374	0.3033	Yes
16	NUP93	1424291_at	816	3.213	0.3134	Yes
17	TAF12	1423398_at	878	3.130	0.3245	Yes
18	RPL4	1425183_a_at	927	3.062	0.3358	Yes
19	RPS3A	1422475_a_at	969	3.020	0.3473	Yes
20	POLR2E	1417138_s_at 1451093_at 1458326_at	1231	2.751	0.3475	Yes
21	GTF2A2	1433528_at	1294	2.679	0.3565	Yes
22	SNRPB2	1426613_a_at 1452422_a_at	1450	2.537	0.3606	Yes
23	HARS	1417024_at 1438510_a_at 1442387_at	1489	2.501	0.3700	Yes
24	NUPL2	1424889_at 1456773_at	1589	2.415	0.3761	Yes
25	MAGOH	1416212_at	1641	2.378	0.3843	Yes
26	EIF4A1	1427058_at 1430980_a_at 1434985_a_at	1752	2.297	0.3894	Yes
27	CPSF1	1417665_a_at	1787	2.274	0.3979	Yes
28	EIF4B	1426378_at 1426379_at 1426380_at	1843	2.238	0.4053	Yes
29	U2AF1	1422509_at	1893	2.197	0.4128	Yes
30	NHP2L1	1416973_at	2200	2.026	0.4077	Yes
31	SFRS6	1416720_at 1416721_s_at 1447898_s_at 1448454_at	2304	1.974	0.4117	Yes
32	NFX1	1419752_at 1419753_at 1428248_at 1442397_at	2509	1.895	0.4108	Yes
33	CSTF1	1417117_at 1448597_at	2709	1.821	0.4097	Yes
34	SSRP1	1426788_a_at 1426789_s_at 1426790_at	2862	1.766	0.4105	Yes
35	YBX1	1418624_at 1430720_at 1438064_at	2960	1.732	0.4137	Yes
36	SNRPF	1428672_at	3248	1.649	0.4079	Yes
37	RPL6	1416546_a_at	3253	1.648	0.4150	Yes
38	POLR2B	1433552_a_at	3286	1.639	0.4208	Yes
39	POLR2I	1428494_a_at	3373	1.611	0.4240	Yes
40	POLR2A	1422311_a_at 1426242_at 1458710_at	3378	1.608	0.4309	Yes
41	EEF1G	1417364_at 1458955_at	3400	1.600	0.4370	Yes
42	EIF4EBP1	1417562_at 1417563_at 1434976_x_at	3405	1.597	0.4439	Yes
43	MED6	1424264_at 1439737_x_at 1458343_x_at	3413	1.594	0.4506	Yes
44	METTL3	1423099_a_at	3424	1.589	0.4572	Yes
45	SFRS3	1416150_a_at 1416151_at 1416152_a_at 1454993_a_at	3506	1.563	0.4604	Yes
46	ETF1	1420023_at 1420024_s_at 1424013_at 1440629_at 1451208_at	3509	1.562	0.4672	Yes
47	SNW1	1429002_at 1429003_at 1459026_at	3714	1.506	0.4646	No
48	YARS	1460638_at	3864	1.461	0.4642	No
49	POLR2D	1424258_at	4090	1.398	0.4600	No
50	AARS	1423685_at 1451083_s_at	4625	1.256	0.4411	No
51	SARS	1426257_a_at 1452000_s_at	4959	1.171	0.4310	No
52	NUP160	1418530_at 1444892_at	5256	1.113	0.4223	No
53	SFRS7	1424033_at 1424883_s_at 1436871_at	5349	1.096	0.4230	No
54	LARS2	1435682_at 1439225_at 1443672_at	5803	1.008	0.4066	No
55	RPL5	1423665_a_at 1447460_at	5864	0.998	0.4083	No
56	EIF4G1	1427036_a_at 1427037_at 1438686_at	5912	0.989	0.4105	No
57	RPL41	1422623_x_at 1455578_x_at	6185	0.944	0.4022	No
58	RPL17	1423855_x_at 1435791_x_at 1453752_at	6219	0.939	0.4049	No
59	RPS23	1460175_at	6500	0.884	0.3959	No
60	SFRS11	1427269_at 1430077_at 1439095_at 1452371_at	6614	0.866	0.3946	No
61	RPS16	1416404_s_at 1437196_x_at 1455835_at	6664	0.855	0.3961	No
62	TAF1	1447417_at 1455513_at 1458744_at	6670	0.854	0.3997	No
63	EIF5	1415723_at 1433631_at 1454663_at 1454664_a_at 1456256_at	6695	0.850	0.4023	No
64	POLR2F	1415754_at 1427402_at	6937	0.810	0.3948	No
65	ELL	1441928_x_at 1460643_at	7347	0.739	0.3793	No
66	RPS24	1436064_x_at 1436500_at 1453362_x_at 1455195_at 1456628_x_at	7459	0.721	0.3774	No
67	CDC40	1442667_at 1445348_at 1453342_at 1457366_at	7979	0.634	0.3564	No
68	IARS	1426705_s_at 1452154_at	8067	0.620	0.3552	No
69	WARS	1415694_at 1425106_a_at 1434813_x_at 1437832_x_at	8216	0.597	0.3510	No
70	MAML2	1446570_at 1447546_s_at	8308	0.584	0.3494	No
71	RNMT	1436328_at 1440002_at 1446442_at 1453106_a_at	8444	0.563	0.3457	No
72	SMC1A	1417830_at 1417831_at 1417832_at	8747	0.515	0.3341	No
73	RPL11	1417615_a_at	8851	0.495	0.3316	No
74	RPL8	1417762_a_at	9001	0.474	0.3269	No
75	EPRS	1430370_at	9119	0.455	0.3235	No
76	SF3B2	1429362_a_at 1433461_at 1438637_x_at 1453123_at 1456040_at 1456352_a_at 1459836_x_at	9218	0.440	0.3210	No
77	PRPF6	1424036_at 1426026_at 1454789_x_at	9525	0.397	0.3087	No
78	RPS19	1449243_a_at 1460442_at	9687	0.373	0.3029	No
79	SF3A2	1450576_a_at 1455546_s_at	9749	0.360	0.3017	No
80	RPS21	1430288_x_at 1433549_x_at 1433721_x_at 1434358_x_at	9993	0.323	0.2920	No
81	RPL37A	1416217_a_at 1460543_x_at	10133	0.303	0.2870	No
82	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	10398	0.260	0.2760	No
83	CCNC	1417861_at 1428570_at 1454144_a_at 1454336_at	10461	0.251	0.2743	No
84	CCNT2	1427088_at 1427089_at 1435445_at 1452297_at 1453399_at 1457439_at	10766	0.205	0.2612	No
85	RPL18A	1428152_a_at	10934	0.180	0.2544	No
86	DARS2	1433838_at	11048	0.162	0.2499	No
87	EIF5B	1434604_at 1434605_at 1435592_at	11286	0.126	0.2396	No
88	POLR2C	1416341_at	11509	0.093	0.2298	No
89	POLR2H	1424473_at	11875	0.034	0.2132	No
90	EIF4E	1450909_at 1457489_at 1459371_at	12117	-0.004	0.2021	No
91	RBM5	1438069_a_at 1441319_at 1444618_at 1444971_at 1452186_at 1452187_at 1456262_at	12167	-0.011	0.1999	No
92	ERCC3	1448497_at	12250	-0.024	0.1963	No
93	RPS5	1416054_at	12261	-0.025	0.1959	No
94	RDBP	1450705_at	12271	-0.028	0.1956	No
95	RPS2	1431766_x_at	12559	-0.084	0.1828	No
96	SFRS9	1417727_at	12658	-0.100	0.1788	No
97	EIF2B2	1434538_x_at 1437428_x_at 1451136_a_at	12966	-0.150	0.1654	No
98	RPL28	1416074_a_at	13008	-0.158	0.1642	No
99	SRRM1	1420934_a_at 1420935_a_at 1442330_at 1447447_s_at 1450045_at 1454689_at 1459828_at	13024	-0.160	0.1642	No
100	TAF11	1446161_at 1451995_at	13025	-0.160	0.1649	No
101	PRPF4	1429724_at 1438481_at	13352	-0.215	0.1509	No
102	CCNT1	1419313_at 1456477_at	13808	-0.294	0.1313	No
103	RPL19	1416219_at	14005	-0.326	0.1237	No
104	RNPS1	1437027_x_at 1437359_at 1437851_x_at 1438267_x_at 1448324_at	14107	-0.344	0.1206	No
105	RPS20	1456373_x_at 1456436_x_at	14354	-0.389	0.1111	No
106	GTF2H1	1453169_a_at	14367	-0.393	0.1123	No
107	RPLP1	1416277_a_at	14533	-0.426	0.1066	No
108	RANBP2	1422621_at 1440104_at 1445883_at 1450690_at	14574	-0.433	0.1066	No
109	SNRPB	1419260_a_at 1437193_s_at	14684	-0.455	0.1037	No
110	TXNL4A	1419179_at	14892	-0.499	0.0964	No
111	TCEB1	1427914_a_at 1427915_s_at 1436226_at 1452593_a_at	15132	-0.549	0.0878	No
112	TBP	1426469_a_at 1426470_at	15196	-0.561	0.0874	No
113	TH1L	1416198_at	15387	-0.599	0.0813	No
114	RPLP2	1415879_a_at	15412	-0.605	0.0829	No
115	SNRPD2	1452680_at	15599	-0.650	0.0773	No
116	NUP35	1426447_at	15684	-0.669	0.0764	No
117	NUP214	1434351_at 1456503_at 1457815_at	15760	-0.682	0.0759	No
118	PTBP1	1424874_a_at 1450443_at 1458284_at	16044	-0.749	0.0663	No
119	RPL18	1437005_a_at 1450372_a_at	16132	-0.771	0.0657	No
120	QARS	1423712_a_at 1453237_at 1456213_x_at 1456726_x_at	16153	-0.775	0.0682	No
121	RPL14	1422128_at 1426793_a_at 1433688_x_at 1436688_x_at 1438507_x_at 1438626_x_at	16207	-0.788	0.0693	No
122	RPL27A	1437729_at	16217	-0.791	0.0724	No
123	FAU	1417452_a_at	16229	-0.793	0.0754	No
124	SF3B1	1418561_at 1418562_at 1440818_s_at 1449138_at	16276	-0.805	0.0768	No
125	NUDT21	1417681_at 1428339_at 1437213_at 1455966_s_at	16318	-0.814	0.0785	No
126	POLR2J	1417720_at 1440065_at	16322	-0.815	0.0820	No
127	EIF2S1	1440272_at 1452662_a_at	16379	-0.831	0.0831	No
128	GTF2H3	1454092_a_at	16414	-0.840	0.0853	No
129	FARS2	1431354_a_at 1439406_x_at	16526	-0.866	0.0840	No
130	RPS15A	1453467_s_at 1457726_at	17034	-0.985	0.0651	No
131	DHX9	1425617_at 1425618_at 1451770_s_at	17119	-1.003	0.0657	No
132	CCNH	1418585_at	17242	-1.028	0.0646	No
133	NUP153	1441689_at 1441733_s_at 1452176_at	17323	-1.041	0.0656	No
134	RPS28	1451101_a_at	17683	-1.135	0.0541	No
135	CD2BP2	1417223_at 1417224_a_at 1448624_at	17904	-1.204	0.0494	No
136	PRPF8	1422453_at	18075	-1.259	0.0471	No
137	U2AF2	1417260_at	18540	-1.421	0.0321	No
138	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	18656	-1.474	0.0334	No
139	EEF1E1	1444757_at 1449044_at	19040	-1.637	0.0230	No
140	RAE1	1429528_at 1444256_at 1459822_at	19439	-1.818	0.0128	No
141	TAF4	1427460_at 1452438_s_at	19515	-1.863	0.0176	No
142	TAF10	1448784_at	19771	-2.050	0.0150	No
143	PARS2	1427309_at	19924	-2.188	0.0177	No
144	SF3B3	1415985_at 1430075_at	20129	-2.364	0.0188	No
145	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20262	-2.456	0.0236	No
146	RNGTT	1425844_a_at 1448714_at	20350	-2.542	0.0309	No
147	NUP62	1415925_a_at 1415926_at 1437612_at 1438917_x_at 1447905_x_at 1448150_at	20412	-2.600	0.0396	No
148	TPR	1426948_at 1426949_s_at 1456112_at 1456651_a_at	20696	-2.952	0.0397	No
149	EEF2	1424736_at 1440784_at 1441414_at	21207	-3.861	0.0334	No