Details for gene set REACTOME_FORMATION_AND_MATURATION_OF_MRNA

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	ATM_minus
GeneSet	REACTOME_FORMATION_AND_MATURATION_OF_MRNA_TRANSCRIPT
Enrichment Score (ES)	0.48241323
Normalized Enrichment Score (NES)	1.9767814
Nominal p-value	0.0
FDR q-value	0.011344377
FWER p-Value	0.071

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SF3A1	1419087_s_at 1445719_at 1446687_at 1449333_at	20	8.935	0.0515	Yes
2	SNRPA1	1417351_a_at 1417352_s_at 1417353_x_at	72	6.411	0.0868	Yes
3	TAF9	1422778_at 1451509_at	119	5.623	0.1177	Yes
4	GTF2E2	1448884_at	200	5.075	0.1438	Yes
5	SF3A3	1423811_at	287	4.587	0.1668	Yes
6	NCBP2	1423045_at 1423046_s_at 1450847_at	468	3.976	0.1818	Yes
7	CCAR1	1436156_at 1436157_at 1453319_at	484	3.944	0.2043	Yes
8	GTF2H2	1450701_a_at 1457818_at	546	3.794	0.2238	Yes
9	MNAT1	1432177_a_at	556	3.770	0.2455	Yes
10	PHF5A	1424170_at	601	3.640	0.2648	Yes
11	GTF2B	1438066_at 1451135_at	726	3.374	0.2789	Yes
12	GTF2F1	1417698_at 1417699_at	749	3.340	0.2975	Yes
13	TAF12	1423398_at	878	3.130	0.3100	Yes
14	THOC4	1417724_at 1436211_at	1031	2.964	0.3204	Yes
15	EFTUD2	1416557_a_at 1438835_a_at 1438836_at 1456107_x_at	1095	2.900	0.3346	Yes
16	POLR2E	1417138_s_at 1451093_at 1458326_at	1231	2.751	0.3445	Yes
17	GTF2A2	1433528_at	1294	2.679	0.3574	Yes
18	SNRPB2	1426613_a_at 1452422_a_at	1450	2.537	0.3652	Yes
19	MAGOH	1416212_at	1641	2.378	0.3704	Yes
20	CPSF1	1417665_a_at	1787	2.274	0.3771	Yes
21	CSTF2	1419644_at 1419645_at 1455523_at	1885	2.207	0.3856	Yes
22	U2AF1	1422509_at	1893	2.197	0.3982	Yes
23	TAF5	1435474_at	1936	2.167	0.4090	Yes
24	NHP2L1	1416973_at	2200	2.026	0.4088	Yes
25	SFRS6	1416720_at 1416721_s_at 1447898_s_at 1448454_at	2304	1.974	0.4157	Yes
26	SNRPD3	1422884_at 1422885_at 1449629_s_at	2338	1.961	0.4257	Yes
27	NFX1	1419752_at 1419753_at 1428248_at 1442397_at	2509	1.895	0.4290	Yes
28	POLR2L	1428296_at	2685	1.829	0.4317	Yes
29	CSTF1	1417117_at 1448597_at	2709	1.821	0.4414	Yes
30	SSRP1	1426788_a_at 1426789_s_at 1426790_at	2862	1.766	0.4448	Yes
31	YBX1	1418624_at 1430720_at 1438064_at	2960	1.732	0.4505	Yes
32	SNRPF	1428672_at	3248	1.649	0.4470	Yes
33	POLR2B	1433552_a_at	3286	1.639	0.4549	Yes
34	POLR2I	1428494_a_at	3373	1.611	0.4604	Yes
35	POLR2A	1422311_a_at 1426242_at 1458710_at	3378	1.608	0.4697	Yes
36	METTL3	1423099_a_at	3424	1.589	0.4770	Yes
37	SFRS3	1416150_a_at 1416151_at 1416152_a_at 1454993_a_at	3506	1.563	0.4824	Yes
38	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	3772	1.489	0.4790	No
39	TAF13	1448707_at	3909	1.450	0.4813	No
40	POLR2D	1424258_at	4090	1.398	0.4812	No
41	SF4	1424381_at 1444699_at	4937	1.177	0.4494	No
42	SFRS7	1424033_at 1424883_s_at 1436871_at	5349	1.096	0.4370	No
43	FUS	1451285_at 1451286_s_at 1455831_at 1458801_at	5946	0.983	0.4154	No
44	GTF2E1	1428124_at 1443110_at	6072	0.960	0.4154	No
45	SFRS11	1427269_at 1430077_at 1439095_at 1452371_at	6614	0.866	0.3957	No
46	TAF1	1447417_at 1455513_at 1458744_at	6670	0.854	0.3981	No
47	SNRPA	1417274_at	6804	0.831	0.3969	No
48	POLR2F	1415754_at 1427402_at	6937	0.810	0.3956	No
49	ERCC2	1460727_at	7173	0.769	0.3894	No
50	ELL	1441928_x_at 1460643_at	7347	0.739	0.3858	No
51	CDC40	1442667_at 1445348_at 1453342_at 1457366_at	7979	0.634	0.3606	No
52	RNMT	1436328_at 1440002_at 1446442_at 1453106_a_at	8444	0.563	0.3426	No
53	SMC1A	1417830_at 1417831_at 1417832_at	8747	0.515	0.3318	No
54	POLR2G	1416270_at	9196	0.444	0.3139	No
55	SF3B2	1429362_a_at 1433461_at 1438637_x_at 1453123_at 1456040_at 1456352_a_at 1459836_x_at	9218	0.440	0.3155	No
56	PRPF6	1424036_at 1426026_at 1454789_x_at	9525	0.397	0.3038	No
57	SF3A2	1450576_a_at 1455546_s_at	9749	0.360	0.2957	No
58	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	10398	0.260	0.2676	No
59	CCNT2	1427088_at 1427089_at 1435445_at 1452297_at 1453399_at 1457439_at	10766	0.205	0.2520	No
60	PAPOLA	1424216_a_at 1424217_at 1427544_a_at 1444015_at 1455836_at	10860	0.191	0.2488	No
61	POLR2C	1416341_at	11509	0.093	0.2197	No
62	POLR2H	1424473_at	11875	0.034	0.2032	No
63	RBM5	1438069_a_at 1441319_at 1444618_at 1444971_at 1452186_at 1452187_at 1456262_at	12167	-0.011	0.1899	No
64	ERCC3	1448497_at	12250	-0.024	0.1863	No
65	RDBP	1450705_at	12271	-0.028	0.1855	No
66	SFRS9	1417727_at	12658	-0.100	0.1684	No
67	RBMX	1416177_at 1416354_at 1416355_at 1426863_at 1437847_x_at	13000	-0.156	0.1537	No
68	SRRM1	1420934_a_at 1420935_a_at 1442330_at 1447447_s_at 1450045_at 1454689_at 1459828_at	13024	-0.160	0.1536	No
69	TAF11	1446161_at 1451995_at	13025	-0.160	0.1546	No
70	PRPF4	1429724_at 1438481_at	13352	-0.215	0.1409	No
71	PABPN1	1415728_at 1422848_a_at 1422849_a_at 1422850_at	13446	-0.231	0.1380	No
72	CCNT1	1419313_at 1456477_at	13808	-0.294	0.1232	No
73	GTF2F2	1426626_at 1443233_at	14094	-0.342	0.1121	No
74	RNPS1	1437027_x_at 1437359_at 1437851_x_at 1438267_x_at 1448324_at	14107	-0.344	0.1136	No
75	GTF2H1	1453169_a_at	14367	-0.393	0.1040	No
76	GTF2A1	1421357_at	14462	-0.412	0.1021	No
77	SNRPB	1419260_a_at 1437193_s_at	14684	-0.455	0.0947	No
78	TXNL4A	1419179_at	14892	-0.499	0.0881	No
79	TCEB1	1427914_a_at 1427915_s_at 1436226_at 1452593_a_at	15132	-0.549	0.0804	No
80	TBP	1426469_a_at 1426470_at	15196	-0.561	0.0808	No
81	TH1L	1416198_at	15387	-0.599	0.0756	No
82	SNRPD2	1452680_at	15599	-0.650	0.0698	No
83	PCBP2	1421743_a_at 1435881_at	15622	-0.656	0.0726	No
84	SNRPE	1451294_s_at	15986	-0.733	0.0603	No
85	PTBP1	1424874_a_at 1450443_at 1458284_at	16044	-0.749	0.0620	No
86	SF3B1	1418561_at 1418562_at 1440818_s_at 1449138_at	16276	-0.805	0.0562	No
87	NUDT21	1417681_at 1428339_at 1437213_at 1455966_s_at	16318	-0.814	0.0591	No
88	POLR2J	1417720_at 1440065_at	16322	-0.815	0.0637	No
89	GTF2H3	1454092_a_at	16414	-0.840	0.0645	No
90	DHX9	1425617_at 1425618_at 1451770_s_at	17119	-1.003	0.0381	No
91	CCNH	1418585_at	17242	-1.028	0.0386	No
92	SFRS4	1448778_at	17635	-1.123	0.0272	No
93	CD2BP2	1417223_at 1417224_a_at 1448624_at	17904	-1.204	0.0220	No
94	CSTF3	1424723_s_at 1443909_at	18017	-1.239	0.0241	No
95	PRPF8	1422453_at	18075	-1.259	0.0289	No
96	PCBP1	1448642_at	18400	-1.370	0.0221	No
97	U2AF2	1417260_at	18540	-1.421	0.0241	No
98	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	18656	-1.474	0.0274	No
99	TCEB2	1428263_a_at	18895	-1.579	0.0258	No
100	TCEB3	1422591_at 1434117_at 1450676_at	19495	-1.853	0.0092	No
101	TAF4	1427460_at 1452438_s_at	19515	-1.863	0.0193	No
102	CDK9	1417269_at 1457240_at	19725	-2.022	0.0216	No
103	TAF10	1448784_at	19771	-2.050	0.0316	No
104	SF3B3	1415985_at 1430075_at	20129	-2.364	0.0291	No
105	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20262	-2.456	0.0374	No
106	RNGTT	1425844_a_at 1448714_at	20350	-2.542	0.0484	No
107	TAF6	1418593_at	21323	-4.119	0.0280	No