Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.5204109
Normalized Enrichment Score (NES)	-2.0455773
Nominal p-value	0.0
FDR q-value	0.01121174
FWER p-Value	0.024

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	UNC119	1418123_at	92	6.072	0.0221	No
2	CEBPB	1418901_at 1427844_a_at	129	5.556	0.0445	No
3	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	361	4.302	0.0526	No
4	SHB	1434153_at	450	4.012	0.0659	No
5	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	1090	2.905	0.0492	No
6	NCK1	1421487_a_at 1424543_at 1447271_at	1960	2.152	0.0187	No
7	PIK3R2	1418463_at	1970	2.146	0.0276	No
8	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	2937	1.741	-0.0091	No
9	PLCG1	1435149_at 1450360_at	2985	1.724	-0.0038	No
10	GRB2	1418508_a_at 1449111_a_at	3588	1.538	-0.0247	No
11	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	3687	1.511	-0.0227	No
12	PTPN12	1422045_a_at 1439705_at 1450478_a_at 1450479_x_at 1455105_at 1459459_at	3759	1.493	-0.0194	No
13	NFAM1	1425714_a_at 1428790_at	3791	1.482	-0.0144	No
14	RAP1A	1424139_at	4179	1.374	-0.0262	No
15	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	4425	1.307	-0.0318	No
16	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	4454	1.298	-0.0274	No
17	KHDRBS1	1418628_at 1418630_at	5139	1.134	-0.0539	No
18	ARHGEF6	1429012_at 1442292_at	5496	1.067	-0.0656	No
19	CREBBP	1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at	5999	0.972	-0.0843	No
20	PTPN22	1417995_at 1442820_at	6062	0.962	-0.0830	No
21	MAP2K1	1416351_at	6572	0.873	-0.1026	No
22	RIPK2	1421236_at 1450173_at	6767	0.837	-0.1078	No
23	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	6931	0.812	-0.1118	No
24	SHC1	1422853_at 1422854_at	8026	0.627	-0.1592	No
25	STK39	1419550_a_at 1419551_s_at 1431434_at 1445431_at	8130	0.611	-0.1613	No
26	DUSP3	1425608_at 1434472_at 1456769_at	8746	0.515	-0.1872	No
27	ABI1	1423177_a_at 1423178_at 1450890_a_at	8911	0.485	-0.1926	No
28	SKAP1	1437249_at 1440326_at 1440782_at 1441322_at 1441418_at 1441589_at 1456678_at	9115	0.455	-0.1999	No
29	SLA2	1437504_at 1451492_at	9126	0.454	-0.1984	No
30	DNM2	1423629_at 1425135_a_at 1425136_x_at 1432004_a_at 1432005_at 1437938_x_at 1443150_at 1451057_x_at	10418	0.257	-0.2565	No
31	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	10609	0.230	-0.2642	No
32	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	10669	0.219	-0.2659	No
33	PTPN11	1421196_at 1427699_a_at 1451225_at	11042	0.164	-0.2823	No
34	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	11878	0.033	-0.3204	No
35	JAK3	1425750_a_at 1446515_at	11975	0.019	-0.3247	No
36	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	12265	-0.026	-0.3378	No
37	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	12424	-0.056	-0.3448	No
38	FYB	1452117_a_at	12591	-0.090	-0.3520	No
39	LAT	1460651_at	12741	-0.112	-0.3584	No
40	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	13078	-0.170	-0.3730	No
41	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	13566	-0.252	-0.3943	No
42	ENAH	1421624_a_at 1424800_at 1424801_at 1431162_a_at 1442223_at 1446426_at 1458876_at	14375	-0.395	-0.4296	No
43	WAS	1419631_at	15348	-0.593	-0.4715	No
44	SOS1	1421884_at 1421885_at 1421886_at	15572	-0.643	-0.4790	No
45	PTPRC	1422124_a_at 1440165_at	15964	-0.730	-0.4937	No
46	FOS	1423100_at	16185	-0.784	-0.5004	No
47	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	16226	-0.792	-0.4988	No
48	SOS2	1452281_at	16240	-0.796	-0.4959	No
49	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	16308	-0.813	-0.4955	No
50	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	16434	-0.844	-0.4976	No
51	DOCK2	1422808_s_at 1437282_at 1438334_at 1459382_at	16591	-0.881	-0.5009	No
52	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	16714	-0.917	-0.5025	No
53	CBL	1434829_at 1446608_at 1450457_at 1455886_at	16890	-0.955	-0.5064	No
54	PTPN3	1443162_at 1455450_at	16998	-0.977	-0.5071	No
55	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	17183	-1.015	-0.5111	No
56	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	17198	-1.018	-0.5073	No
57	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	17215	-1.022	-0.5036	No
58	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	17336	-1.044	-0.5046	No
59	CD8A	1440164_x_at 1440811_x_at	17457	-1.076	-0.5054	No
60	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	17587	-1.112	-0.5065	No
61	PRKCQ	1426044_a_at	17590	-1.113	-0.5018	No
62	FYN	1417558_at 1441647_at 1448765_at	17777	-1.164	-0.5053	No
63	GRAP2	1456432_at	17838	-1.184	-0.5029	No
64	SKAP2	1418895_at 1457097_at 1460623_at	18171	-1.290	-0.5125	No
65	JUN	1417409_at 1448694_at	18344	-1.347	-0.5146	Yes
66	SRC	1423240_at 1450918_s_at	18385	-1.363	-0.5105	Yes
67	ARHGEF7	1424482_at 1449066_a_at	18531	-1.417	-0.5110	Yes
68	TRAT1	1427532_at 1437561_at	18648	-1.470	-0.5100	Yes
69	DBNL	1460334_at	18699	-1.495	-0.5058	Yes
70	PTPN6	1456694_x_at 1460188_at	18763	-1.521	-0.5021	Yes
71	ZAP70	1422701_at 1439749_at 1440178_x_at	18827	-1.548	-0.4983	Yes
72	DTX1	1425822_a_at 1458643_at	18881	-1.573	-0.4939	Yes
73	PRKD2	1434333_a_at 1434334_at 1436589_x_at 1437509_x_at 1456075_at	19064	-1.646	-0.4951	Yes
74	CARD11	1430257_at 1435996_at	19248	-1.735	-0.4959	Yes
75	CD247	1420716_at 1426079_at 1426396_at 1428059_at 1428060_at 1438392_at 1452539_a_at	19297	-1.756	-0.4905	Yes
76	EVL	1434920_a_at 1440885_at 1445957_at 1450106_a_at 1456453_at 1458889_at	19315	-1.764	-0.4837	Yes
77	HOMER3	1424859_at	19437	-1.818	-0.4813	Yes
78	SH2D2A	1449105_at	19475	-1.842	-0.4751	Yes
79	SLA	1420818_at 1420819_at 1441761_at 1447813_x_at	19556	-1.889	-0.4705	Yes
80	LCP2	1418641_at 1418642_at	19655	-1.963	-0.4665	Yes
81	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	19751	-2.036	-0.4621	Yes
82	PAG1	1423002_at 1440033_at 1443319_at 1456403_at	19979	-2.231	-0.4628	Yes
83	CD3G	1419178_at	20005	-2.256	-0.4542	Yes
84	RAPGEF1	1421146_at 1427006_at 1441386_at	20099	-2.341	-0.4483	Yes
85	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	20162	-2.391	-0.4408	Yes
86	TUBB2A	1427838_at	20618	-2.851	-0.4493	Yes
87	CBLB	1437304_at 1455082_at 1458469_at	20711	-2.984	-0.4406	Yes
88	CD3D	1422828_at	20755	-3.039	-0.4294	Yes
89	STAT5A	1421469_a_at 1450259_a_at	20852	-3.200	-0.4199	Yes
90	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	20980	-3.433	-0.4108	Yes
91	VASP	1451097_at	21020	-3.497	-0.3975	Yes
92	SH2D3C	1415886_at	21136	-3.731	-0.3866	Yes
93	ARHGDIB	1426454_at	21139	-3.736	-0.3705	Yes
94	CISH	1448724_at	21375	-4.255	-0.3628	Yes
95	CD3E	1422105_at 1445748_at	21430	-4.440	-0.3461	Yes
96	CD4	1419696_at 1427779_a_at	21452	-4.512	-0.3275	Yes
97	SH3BP2	1448328_at	21456	-4.518	-0.3081	Yes
98	CD5	1418353_at	21580	-5.050	-0.2918	Yes
99	LAX1	1438687_at	21610	-5.229	-0.2705	Yes
100	VAV1	1422932_a_at	21645	-5.494	-0.2483	Yes
101	WASF2	1438683_at	21647	-5.497	-0.2245	Yes
102	DEF6	1452796_at	21691	-5.764	-0.2015	Yes
103	PSTPIP1	1424560_at	21704	-5.891	-0.1765	Yes
104	STAT5B	1422102_a_at 1422103_a_at	21715	-6.071	-0.1507	Yes
105	PTK2B	1434653_at 1442437_at 1442927_at	21724	-6.115	-0.1246	Yes
106	TXK	1425785_a_at	21735	-6.239	-0.0980	Yes
107	GRAP	1429387_at	21781	-6.889	-0.0702	Yes
108	SIT1	1418751_at	21824	-7.604	-0.0392	Yes
109	GIT2	1423391_at 1432160_at 1435925_at	21914	-10.198	0.0009	Yes