Details for gene set CYTOSKELETAL_PROTEIN

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	CYTOSKELETAL_PROTEIN_BINDING
Enrichment Score (ES)	-0.4652797
Normalized Enrichment Score (NES)	-1.7569966
Nominal p-value	0.0
FDR q-value	0.59245664
FWER p-Value	0.903

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	APOE	1432466_a_at	226	5.127	0.0115	No
2	KATNA1	1450949_at	451	4.176	0.0190	No
3	LRPPRC	1424353_at	544	3.881	0.0314	No
4	MYH9	1417472_at 1420170_at 1420171_s_at 1420172_at 1440708_at	587	3.779	0.0455	No
5	TNNI3	1422536_at	1360	2.672	0.0215	No
6	BRCA2	1419076_a_at	1579	2.450	0.0220	No
7	UXT	1418986_a_at	1806	2.274	0.0213	No
8	TNNT1	1419606_a_at	2373	1.962	0.0037	No
9	ARL8B	1418819_at 1428137_at 1428138_s_at	2439	1.931	0.0090	No
10	BIRC5	1424278_a_at	2548	1.880	0.0120	No
11	ABLIM1	1442376_at 1453103_at 1454708_at 1460120_at	2572	1.869	0.0189	No
12	NDE1	1435737_a_at	2788	1.791	0.0167	No
13	MYO9B	1418031_at 1438533_at 1459110_at	2831	1.775	0.0223	No
14	PARVG	1416875_at 1416876_at	2878	1.761	0.0277	No
15	TRIM63	1438704_at	3424	1.585	0.0095	No
16	HPCA	1425833_a_at 1450930_at	3589	1.531	0.0085	No
17	ABI2	1433985_at 1436984_at 1444783_at 1458053_at 1460153_at	3825	1.468	0.0040	No
18	RABGAP1	1424188_at 1441217_at 1441800_at 1443535_at 1457370_at 1460486_at	3942	1.436	0.0048	No
19	ABRA	1458455_at	4000	1.421	0.0082	No
20	VCL	1416156_at 1416157_at 1445256_at	4357	1.338	-0.0024	No
21	PKD2L1	1457105_at	4562	1.286	-0.0063	No
22	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	5586	1.092	-0.0485	No
23	SSH1	1433874_at 1438253_at 1439237_a_at 1455854_a_at	6034	1.021	-0.0647	No
24	TARDBP	1423723_s_at 1428467_at 1434419_s_at 1436318_at 1455655_a_at	6403	0.966	-0.0775	No
25	MAPK8IP3	1416437_a_at 1425975_a_at 1436676_at 1460628_at	6716	0.917	-0.0879	No
26	SORBS2	1437197_at 1441624_at 1446744_at	6783	0.909	-0.0870	No
27	ARPC1A	1416079_a_at	6792	0.907	-0.0835	No
28	GC	1426547_at	7236	0.836	-0.1003	No
29	ACTN2	1448327_at 1456968_at	7526	0.793	-0.1101	No
30	PKD2	1417753_at 1441870_s_at	7653	0.773	-0.1126	No
31	MYO6	1421120_at 1433942_at 1435559_at	7711	0.766	-0.1120	No
32	EGFR	1424932_at 1432647_at 1435888_at 1451530_at 1454313_at 1457563_at 1460420_a_at	7824	0.750	-0.1139	No
33	MYBPC3	1418551_at	7830	0.749	-0.1110	No
34	RAB11FIP5	1427405_s_at 1434314_s_at	7911	0.737	-0.1115	No
35	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	8048	0.719	-0.1147	No
36	SORBS3	1419329_at	8202	0.693	-0.1187	No
37	S100B	1419383_at 1434342_at	8405	0.663	-0.1252	No
38	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	8589	0.635	-0.1308	No
39	NCALD	1417568_at 1417569_at 1439730_at 1444466_at 1458037_at	8813	0.602	-0.1385	No
40	IPP	1421771_a_at	8959	0.582	-0.1427	No
41	FXYD5	1418296_at	9121	0.557	-0.1477	No
42	LIMA1	1422499_at 1425654_a_at 1435726_at 1435727_s_at 1450629_at	9146	0.553	-0.1464	No
43	NRAP	1421253_at	9215	0.544	-0.1472	No
44	STMN1	1415849_s_at	9253	0.538	-0.1466	No
45	SYNPO	1427045_at 1434089_at	9653	0.482	-0.1629	No
46	VAPB	1423152_at 1436079_s_at 1445370_at 1458501_at	10066	0.426	-0.1800	No
47	MAPRE1	1422764_at 1422765_at 1428819_at 1428820_at 1450740_a_at	10112	0.422	-0.1802	No
48	MAPK8IP2	1418785_at 1418786_at 1435045_s_at 1449225_a_at 1455194_at	10178	0.414	-0.1814	No
49	ADD1	1420953_at 1420954_a_at 1439125_at 1450054_at	10491	0.369	-0.1942	No
50	ACTN1	1427385_s_at 1428585_at 1452415_at	11006	0.300	-0.2165	No
51	TMOD2	1430153_at 1431326_a_at 1435060_at 1437167_at 1439223_at 1451301_at	11025	0.297	-0.2160	No
52	CCR5	1422259_a_at 1422260_x_at 1424727_at	11211	0.269	-0.2234	No
53	NEXN	1435649_at 1446084_at	11277	0.259	-0.2253	No
54	TNNC1	1418370_at	11289	0.257	-0.2247	No
55	MAPT	1417885_at 1424718_at 1424719_a_at 1445634_at 1455028_at	11333	0.250	-0.2256	No
56	PDLIM5	1429783_at 1438186_at 1442710_at 1446339_at	11813	0.180	-0.2468	No
57	DCX	1418139_at 1418140_at 1418141_at 1448974_at	11843	0.175	-0.2474	No
58	APC	1420956_at 1420957_at 1435543_at 1450056_at	12128	0.131	-0.2598	No
59	CAPZA1	1439455_x_at 1440380_at	12277	0.108	-0.2662	No
60	ANLN	1433543_at 1439648_at	12524	0.073	-0.2771	No
61	PRNP	1416130_at 1446507_at 1448233_at	13124	-0.024	-0.3045	No
62	DST	1421117_at 1421276_a_at 1423626_at 1442395_at 1446943_at 1450119_at 1458075_at 1459098_at 1459356_at	13399	-0.070	-0.3168	No
63	DYNC1I1	1416361_a_at	13519	-0.090	-0.3219	No
64	ARFGEF1	1415711_at 1437104_at 1444175_at 1456917_at	13721	-0.130	-0.3305	No
65	CAPZB	1417259_a_at 1424168_a_at 1431668_at 1453960_a_at	13809	-0.145	-0.3339	No
66	MAP1S	1454732_at	13869	-0.154	-0.3360	No
67	RHCG	1417362_at	13894	-0.160	-0.3364	No
68	TNNT2	1418726_a_at 1424967_x_at 1440424_at	14148	-0.204	-0.3471	No
69	SHROOM3	1422629_s_at 1432377_x_at 1442952_at 1445401_at 1451854_a_at 1453714_a_at 1454211_a_at	14335	-0.241	-0.3546	No
70	CGN	1430329_at 1435155_at	14392	-0.250	-0.3561	No
71	RHAG	1419014_at	14402	-0.252	-0.3555	No
72	TTN	1427445_a_at 1427446_s_at 1431928_at 1444083_at 1444638_at 1446450_at	14565	-0.280	-0.3617	No
73	ANK1	1419421_at 1425677_a_at 1443291_at 1450627_at 1452512_a_at	14725	-0.313	-0.3677	No
74	RPH3AL	1431695_at	15023	-0.373	-0.3797	No
75	CDK5RAP2	1443976_at 1447103_at 1452618_at	15353	-0.442	-0.3929	No
76	CROCC	1427338_at	15600	-0.509	-0.4020	No
77	TUBGCP5	1426518_at 1439923_at 1439924_x_at 1457282_x_at	15762	-0.548	-0.4071	No
78	SVIL	1427662_at 1460694_s_at 1460735_at	15863	-0.568	-0.4092	No
79	TMOD4	1449969_at	16199	-0.659	-0.4218	No
80	TLN1	1436042_at 1448402_at 1457782_at	16490	-0.743	-0.4319	No
81	MYOZ1	1448636_at 1460202_at	16496	-0.744	-0.4290	No
82	ATG4C	1434014_at 1441440_at	16551	-0.758	-0.4282	No
83	ARPC4	1423588_at 1423589_at	16835	-0.852	-0.4376	No
84	MARCKS	1415971_at 1415972_at 1430311_at 1437034_x_at 1456028_x_at	16946	-0.884	-0.4389	No
85	MEFV	1460283_at	17033	-0.914	-0.4389	No
86	MAPK8IP1	1425679_a_at 1440619_at	17141	-0.947	-0.4398	No
87	SPTBN4	1425116_a_at	17180	-0.960	-0.4374	No
88	HOOK3	1443857_at 1446737_a_at	17486	-1.057	-0.4469	No
89	BAIAP2	1425656_a_at 1435128_at 1451027_at 1451028_at	17684	-1.147	-0.4511	No
90	TMOD3	1423088_at 1423089_at 1438556_a_at 1439626_at 1455708_at 1456913_at	17995	-1.273	-0.4598	Yes
91	SORBS1	1417358_s_at 1425826_a_at 1428471_at 1436737_a_at 1440311_at 1442401_at 1443983_at 1455967_at	18010	-1.279	-0.4550	Yes
92	CTNNA1	1437275_at 1437807_x_at 1443662_at 1448149_at	18012	-1.280	-0.4496	Yes
93	CLASP2	1424836_a_at 1427328_a_at 1429976_at 1440802_at 1441726_at 1443320_at 1456911_at	18015	-1.280	-0.4443	Yes
94	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	18076	-1.306	-0.4414	Yes
95	CYFIP1	1416329_at 1445327_at 1457134_at 1457615_at	18345	-1.438	-0.4476	Yes
96	MYH10	1441057_at 1452740_at	18550	-1.535	-0.4504	Yes
97	RACGAP1	1421546_a_at 1441889_x_at 1451358_a_at	18571	-1.542	-0.4448	Yes
98	ADD2	1421975_a_at 1435287_at 1451914_a_at	18600	-1.552	-0.4394	Yes
99	KPTN	1423438_at 1440025_at	18657	-1.575	-0.4353	Yes
100	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	18709	-1.603	-0.4308	Yes
101	COTL1	1416001_a_at 1416002_x_at 1425801_x_at 1436236_x_at 1436838_x_at 1437811_x_at	18769	-1.652	-0.4264	Yes
102	PACSIN3	1416995_at 1431534_at 1437834_s_at 1456191_x_at	18823	-1.681	-0.4217	Yes
103	ESPN	1423005_a_at 1458260_at	18873	-1.703	-0.4167	Yes
104	PXN	1424027_at 1426085_a_at 1456135_s_at	18885	-1.708	-0.4099	Yes
105	GABARAPL2	1423187_at 1441376_at 1444956_at 1459477_at	19092	-1.854	-0.4115	Yes
106	IQGAP2	1433885_at 1459894_at	19401	-2.070	-0.4168	Yes
107	ARL8A	1424640_at	19483	-2.116	-0.4114	Yes
108	SYNE1	1421545_a_at 1455225_at 1455493_at	19490	-2.120	-0.4027	Yes
109	POLB	1425371_at 1434229_a_at	19664	-2.251	-0.4010	Yes
110	SCIN	1450276_a_at	19781	-2.361	-0.3963	Yes
111	SSH2	1456153_at	19900	-2.478	-0.3911	Yes
112	ABI1	1423177_a_at 1423178_at 1450890_a_at	19987	-2.566	-0.3841	Yes
113	SMTN	1452469_a_at	20018	-2.594	-0.3744	Yes
114	CLASP1	1427353_at 1452265_at 1459233_at 1460102_at	20029	-2.607	-0.3638	Yes
115	TUBGCP3	1426707_at	20188	-2.789	-0.3591	Yes
116	ACTA1	1427735_a_at	20245	-2.852	-0.3495	Yes
117	RAE1	1429528_at 1444256_at 1459822_at	20439	-3.076	-0.3453	Yes
118	DBNL	1460334_at	20444	-3.079	-0.3323	Yes
119	ACTN4	1423449_a_at 1444258_at	20471	-3.113	-0.3203	Yes
120	UNC84B	1433832_at 1439238_at	20478	-3.124	-0.3072	Yes
121	CENPJ	1423140_at 1423141_at 1437643_at 1450872_s_at	20521	-3.189	-0.2955	Yes
122	MTSS1	1424826_s_at 1434036_at 1440847_at 1443729_at 1446284_at 1451496_at	20657	-3.388	-0.2873	Yes
123	CXCR4	1448710_at	20678	-3.415	-0.2736	Yes
124	JUP	1426873_s_at	20721	-3.478	-0.2607	Yes
125	GABARAP	1416937_at	20951	-3.828	-0.2549	Yes
126	MARK4	1439051_a_at 1456618_at	20958	-3.846	-0.2388	Yes
127	CNN2	1450981_at	21010	-3.935	-0.2243	Yes
128	TUBGCP6	1435090_at	21030	-3.972	-0.2083	Yes
129	ATG4D	1433918_at 1439130_at	21087	-4.115	-0.1933	Yes
130	PALLD	1427228_at 1433768_at 1440635_at 1440693_at	21154	-4.277	-0.1781	Yes
131	CDC42EP3	1422642_at 1450700_at	21164	-4.289	-0.1602	Yes
132	KIF5B	1418427_at 1418428_at 1418429_at 1418430_at 1418431_at	21360	-4.810	-0.1486	Yes
133	MYLIP	1424988_at	21433	-5.083	-0.1303	Yes
134	FLNA	1426677_at	21604	-5.948	-0.1127	Yes
135	WASF2	1438683_at	21686	-6.500	-0.0887	Yes
136	LSP1	1417756_a_at	21894	-11.171	-0.0506	Yes
137	GABARAPL1	1416418_at 1416419_s_at 1442572_at	21925	-12.275	0.0004	Yes