Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_Q6
Enrichment Score (ES)	-0.450257
Normalized Enrichment Score (NES)	-1.7928421
Nominal p-value	0.0
FDR q-value	0.012077856
FWER p-Value	0.083

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ACAA2	1428145_at 1428146_s_at 1455061_a_at	211	5.215	0.0051	No
2	RBBP7	1415775_at 1456227_x_at	397	4.357	0.0089	No
3	LDHA	1419737_a_at	486	4.060	0.0164	No
4	CABP1	1421255_a_at	535	3.915	0.0253	No
5	RSU1	1419259_at	872	3.244	0.0190	No
6	NFATC4	1423380_s_at 1432821_at 1454369_a_at	1210	2.805	0.0115	No
7	IGF2AS	1427394_at	1212	2.805	0.0194	No
8	PPARG	1420715_a_at	1758	2.313	0.0009	No
9	RAP1A	1424139_at	1761	2.307	0.0073	No
10	NAV1	1436907_at 1443629_at 1446497_at	2169	2.063	-0.0056	No
11	NR2F1	1418157_at 1422412_x_at	2246	2.026	-0.0033	No
12	CKM	1417614_at	2272	2.014	0.0012	No
13	MATR3	1434888_a_at 1438368_a_at 1441272_at 1450874_at 1458508_at	2403	1.950	0.0008	No
14	ITGA7	1418393_a_at	2407	1.949	0.0062	No
15	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	2498	1.902	0.0074	No
16	MYL1	1452651_a_at	2518	1.896	0.0119	No
17	FOSB	1422134_at	2565	1.874	0.0151	No
18	PDLIM7	1417959_at 1428319_at 1443785_x_at	2659	1.838	0.0161	No
19	GPR158	1438526_at 1459430_at	2683	1.830	0.0202	No
20	AQP2	1418903_at	2795	1.789	0.0202	No
21	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	2923	1.744	0.0193	No
22	SLC7A1	1421533_at 1454991_at 1454992_at	2968	1.727	0.0221	No
23	NPR3	1435184_at 1448024_at 1450286_at	3322	1.615	0.0105	No
24	EPHB1	1455188_at	3367	1.598	0.0130	No
25	STARD13	1452604_at	3400	1.590	0.0160	No
26	PDLIM4	1417928_at	3535	1.552	0.0142	No
27	UBE2D3	1423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at	3607	1.527	0.0153	No
28	EMILIN2	1435264_at	3620	1.522	0.0191	No
29	RASD2	1427343_at 1427344_s_at 1458433_at	4073	1.399	0.0022	No
30	MAPKAPK2	1426648_at	4175	1.378	0.0015	No
31	FGF8	1451882_a_at	4207	1.370	0.0040	No
32	VCL	1416156_at 1416157_at 1445256_at	4357	1.338	0.0009	No
33	MYL9	1452670_at	4523	1.296	-0.0030	No
34	HIST1H4I	1424854_at	4633	1.270	-0.0044	No
35	TCF8	1418926_at 1420243_at 1443005_at 1443203_at 1446127_at 1456686_at	4978	1.202	-0.0169	No
36	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	5037	1.191	-0.0161	No
37	RHOJ	1418892_at 1444982_at	5109	1.181	-0.0161	No
38	HOXA5	1443803_x_at 1448926_at	5336	1.137	-0.0232	No
39	SCN3B	1426328_a_at 1435767_at	5563	1.095	-0.0305	No
40	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	5586	1.092	-0.0284	No
41	SRD5A2	1422960_at	5613	1.087	-0.0266	No
42	PLCB3	1448661_at	5728	1.067	-0.0288	No
43	COL1A1	1423669_at 1455494_at	5877	1.044	-0.0326	No
44	RARB	1454906_at	6055	1.017	-0.0379	No
45	ATF4	1438992_x_at 1439258_at 1448135_at	6092	1.011	-0.0367	No
46	HOXB5	1418415_at	6257	0.989	-0.0414	No
47	CNN1	1417917_at	6328	0.977	-0.0419	No
48	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	6468	0.956	-0.0455	No
49	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	6475	0.956	-0.0431	No
50	IGF1	1419519_at 1436497_at 1437401_at 1452014_a_at	6695	0.920	-0.0506	No
51	DHH	1422127_at 1434959_at	6800	0.907	-0.0528	No
52	SCOC	1416267_at 1430999_a_at	6881	0.895	-0.0539	No
53	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	7052	0.866	-0.0593	No
54	RAB27A	1425284_a_at 1425285_a_at 1429123_at 1454438_at	7209	0.842	-0.0641	No
55	HOXD13	1422239_at 1440626_at	7256	0.832	-0.0638	No
56	ROCK2	1423592_at 1451041_at	7312	0.824	-0.0640	No
57	MYL7	1449071_at	7920	0.736	-0.0899	No
58	NOL4	1430189_at 1441447_at 1456387_at	7928	0.736	-0.0881	No
59	PDLIM3	1443299_at 1449178_at	8036	0.721	-0.0910	No
60	H3F3A	1423263_at 1442087_at	8042	0.720	-0.0892	No
61	DVL3	1420457_at	8252	0.685	-0.0969	No
62	NPAS2	1421036_at 1421037_at	8496	0.649	-0.1062	No
63	CSMD3	1438272_at 1438572_at 1454245_at	8501	0.648	-0.1045	No
64	NKX2-2	1421112_at	8544	0.641	-0.1047	No
65	MSX1	1417127_at 1448601_s_at	8600	0.634	-0.1054	No
66	SDPR	1416778_at 1416779_at 1443832_s_at	8627	0.630	-0.1048	No
67	NKX6-1	1425828_at	8776	0.608	-0.1099	No
68	ITGB1BP2	1423238_at	8922	0.588	-0.1149	No
69	PRELP	1416321_s_at 1416322_at	8929	0.587	-0.1135	No
70	INSM1	1421399_at 1455865_at	9202	0.547	-0.1245	No
71	RIMS1	1435667_at 1438305_at 1444393_at	9272	0.535	-0.1261	No
72	HOXA3	1427433_s_at 1441070_at 1452421_at	9440	0.513	-0.1324	No
73	SRF	1418255_s_at 1418256_at	9517	0.501	-0.1344	No
74	SIX2	1427436_at	9697	0.477	-0.1413	No
75	TNMD	1417979_at	9870	0.452	-0.1479	No
76	ACTR3	1426392_a_at 1434968_a_at 1452051_at	9979	0.437	-0.1517	No
77	GADD45G	1453851_a_at	10051	0.428	-0.1537	No
78	DUSP10	1417163_at 1417164_at	10091	0.424	-0.1543	No
79	HIVEP3	1421150_at 1429134_at 1439660_at 1450132_at 1458802_at	10365	0.388	-0.1658	No
80	RAI2	1452358_at	10385	0.385	-0.1656	No
81	GPR20	1440021_at	10847	0.320	-0.1859	No
82	TAGLN	1423505_at	10992	0.301	-0.1916	No
83	ACTN1	1427385_s_at 1428585_at 1452415_at	11006	0.300	-0.1914	No
84	PLN	1423359_at 1450952_at 1460332_at	11065	0.292	-0.1932	No
85	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	11067	0.292	-0.1924	No
86	CFL1	1448346_at 1455138_x_at	11139	0.280	-0.1949	No
87	COL1A2	1446326_at 1450857_a_at	11242	0.264	-0.1989	No
88	TNNC1	1418370_at	11289	0.257	-0.2002	No
89	IL17B	1431693_a_at	11390	0.242	-0.2042	No
90	NPPA	1456062_at	11505	0.225	-0.2088	No
91	SP7	1418425_at	11600	0.213	-0.2125	No
92	EFHD1	1448507_at	11652	0.204	-0.2143	No
93	TRDN	1426134_at 1426142_a_at 1426143_at 1426144_x_at 1451801_at 1451940_x_at	11654	0.204	-0.2137	No
94	LRRTM4	1437214_at 1455937_at	11734	0.192	-0.2168	No
95	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	11802	0.182	-0.2194	No
96	NNAT	1423506_a_at	11933	0.161	-0.2249	No
97	JPH2	1421453_at 1455404_at	11942	0.160	-0.2248	No
98	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	12201	0.120	-0.2363	No
99	PPP2R3A	1455198_a_at	12283	0.108	-0.2398	No
100	MYO18B	1431813_at	12435	0.087	-0.2465	No
101	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	12482	0.079	-0.2484	No
102	MYH11	1418122_at 1448962_at	12555	0.069	-0.2515	No
103	PODN	1435180_at	12634	0.058	-0.2549	No
104	PRDM1	1420425_at 1444997_at	12655	0.055	-0.2557	No
105	TADA3L	1417467_a_at 1448719_at	12851	0.026	-0.2646	No
106	CORO1C	1417752_at 1419911_at 1437721_at 1442972_at 1449660_s_at 1459169_at	13396	-0.070	-0.2894	No
107	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	13473	-0.082	-0.2927	No
108	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	13602	-0.103	-0.2983	No
109	FOSL1	1417487_at 1417488_at	13667	-0.117	-0.3009	No
110	SLC4A3	1418485_at 1453687_at	13905	-0.161	-0.3113	No
111	KCNMB1	1421400_at 1421401_at	14065	-0.189	-0.3181	No
112	MRGPRF	1425894_at	14123	-0.200	-0.3201	No
113	WNT5A	1436791_at 1448818_at 1456976_at	14467	-0.265	-0.3352	No
114	ATP1A2	1427465_at 1434893_at 1443823_s_at 1452308_a_at 1455136_at	14668	-0.301	-0.3435	No
115	KRTCAP2	1417058_a_at 1417059_at	14729	-0.313	-0.3454	No
116	PPAP2B	1429514_at 1446850_at 1448908_at	14852	-0.339	-0.3500	No
117	ABR	1433477_at	14861	-0.340	-0.3495	No
118	TITF1	1422346_at	14890	-0.346	-0.3498	No
119	EML4	1429612_at 1447838_x_at	14971	-0.362	-0.3524	No
120	HOXA1	1420565_at	15013	-0.372	-0.3532	No
121	HOXD10	1418606_at	15128	-0.391	-0.3574	No
122	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	15176	-0.400	-0.3584	No
123	CFL2	1418066_at 1418067_at 1431432_at	15248	-0.416	-0.3605	No
124	FOXE3	1422393_at	15305	-0.430	-0.3619	No
125	GNG8	1457755_at	15359	-0.445	-0.3630	No
126	TRIM46	1460568_at	15850	-0.566	-0.3840	No
127	SVIL	1427662_at 1460694_s_at 1460735_at	15863	-0.568	-0.3829	No
128	EGR3	1421486_at 1436329_at	15964	-0.593	-0.3858	No
129	POU3F4	1422164_at 1422165_at	15994	-0.600	-0.3855	No
130	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	16179	-0.650	-0.3921	No
131	HOXC5	1439885_at 1450832_at 1456301_at	16222	-0.663	-0.3921	No
132	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	16303	-0.687	-0.3939	No
133	DMPK	1422989_a_at 1434944_at	16413	-0.719	-0.3968	No
134	ADAMTS12	1439827_at 1446666_at	16419	-0.721	-0.3950	No
135	FGFRL1	1447878_s_at 1451912_a_at	16708	-0.811	-0.4060	No
136	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	16814	-0.846	-0.4084	No
137	ARPC4	1423588_at 1423589_at	16835	-0.852	-0.4069	No
138	MAP1A	1460566_at	17460	-1.048	-0.4327	No
139	GRK6	1437436_s_at 1450480_a_at 1451672_at	17587	-1.100	-0.4353	No
140	HOXB4	1451761_at 1460379_at	17605	-1.109	-0.4330	No
141	TGFB1I1	1418136_at	17709	-1.159	-0.4344	No
142	DGKG	1419756_at 1431167_at 1449584_at	17873	-1.224	-0.4384	No
143	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	17922	-1.244	-0.4371	No
144	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	18076	-1.306	-0.4405	No
145	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18141	-1.333	-0.4396	No
146	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	18149	-1.337	-0.4362	No
147	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	18259	-1.393	-0.4372	No
148	LDB3	1416752_at 1433783_at 1451999_at	18262	-1.394	-0.4334	No
149	MYLK	1425504_at 1425505_at 1425506_at	18283	-1.406	-0.4303	No
150	MYL6	1435041_at	18373	-1.448	-0.4303	No
151	KCNK3	1425341_at 1425342_a_at 1426058_a_at	18495	-1.512	-0.4316	No
152	SEPX1	1418888_a_at	18561	-1.539	-0.4302	No
153	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	18709	-1.603	-0.4324	No
154	BLOC1S1	1422614_s_at	18772	-1.654	-0.4306	No
155	MYADM	1423321_at 1439389_s_at	18869	-1.703	-0.4302	No
156	CSNK1E	1417175_at 1417176_at 1435373_at	19148	-1.901	-0.4376	No
157	TES	1424246_a_at 1440649_at 1460378_a_at	19150	-1.902	-0.4322	No
158	PRKAB2	1435874_at 1435875_at 1442001_at	19543	-2.156	-0.4441	Yes
159	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	19560	-2.171	-0.4387	Yes
160	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	19580	-2.185	-0.4334	Yes
161	PFN1	1449018_at	19696	-2.277	-0.4322	Yes
162	AGL	1429083_at 1431032_at 1431033_x_at	19749	-2.326	-0.4280	Yes
163	RRM1	1415878_at 1440073_at 1448127_at	19774	-2.353	-0.4225	Yes
164	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	20195	-2.793	-0.4339	Yes
165	ACTA1	1427735_a_at	20245	-2.852	-0.4280	Yes
166	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	20277	-2.880	-0.4213	Yes
167	ACTG2	1422340_a_at	20310	-2.918	-0.4145	Yes
168	CHD6	1427384_at 1431047_at	20438	-3.075	-0.4116	Yes
169	JMJD1A	1426810_at	20442	-3.078	-0.4030	Yes
170	UNC84B	1433832_at 1439238_at	20478	-3.124	-0.3958	Yes
171	FOXP3	1420765_a_at 1457082_at	20497	-3.148	-0.3877	Yes
172	H2AFX	1416746_at	20570	-3.284	-0.3817	Yes
173	FST	1421365_at 1434458_at	20660	-3.390	-0.3762	Yes
174	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	20692	-3.433	-0.3679	Yes
175	BDNF	1422168_a_at 1422169_a_at	20807	-3.621	-0.3628	Yes
176	LRRFIP1	1433842_at 1437477_at 1448487_at	20927	-3.786	-0.3576	Yes
177	MAP2K6	1426850_a_at 1459292_at	20947	-3.821	-0.3476	Yes
178	CTDSP1	1452055_at	20998	-3.921	-0.3388	Yes
179	CDKN1B	1419497_at 1434045_at	21001	-3.924	-0.3278	Yes
180	CNN2	1450981_at	21010	-3.935	-0.3170	Yes
181	MUS81	1431885_a_at 1450432_s_at	21039	-3.984	-0.3070	Yes
182	TAZ	1416207_at 1453785_at	21062	-4.056	-0.2965	Yes
183	FOS	1423100_at	21153	-4.275	-0.2885	Yes
184	PHF12	1434922_at 1453579_at	21235	-4.496	-0.2795	Yes
185	RUNDC1	1454829_at	21331	-4.737	-0.2704	Yes
186	STAT5B	1422102_a_at 1422103_a_at	21397	-4.949	-0.2594	Yes
187	RASSF2	1428392_at 1444889_at	21481	-5.310	-0.2482	Yes
188	RERE	1454670_at	21506	-5.419	-0.2339	Yes
189	SIPA1	1416206_at	21594	-5.880	-0.2212	Yes
190	JUNB	1415899_at	21600	-5.913	-0.2047	Yes
191	FLNA	1426677_at	21604	-5.948	-0.1880	Yes
192	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	21609	-5.972	-0.1712	Yes
193	DUSP5	1437199_at	21667	-6.307	-0.1560	Yes
194	DUSP2	1450698_at	21723	-6.910	-0.1389	Yes
195	NR4A1	1416505_at	21771	-7.733	-0.1191	Yes
196	EGR1	1417065_at	21855	-9.280	-0.0966	Yes
197	LSP1	1417756_a_at	21894	-11.171	-0.0667	Yes
198	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21906	-11.714	-0.0340	Yes
199	EGR2	1427682_a_at 1427683_at	21928	-12.431	0.0003	Yes