Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_Q4
Enrichment Score (ES)	-0.4743817
Normalized Enrichment Score (NES)	-1.856771
Nominal p-value	0.0
FDR q-value	0.005296655
FWER p-Value	0.028

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TPM1	1423049_a_at 1423721_at 1447713_at 1456623_at	181	5.375	0.0085	No
2	DSTN	1417124_at	215	5.188	0.0232	No
3	RBBP7	1415775_at 1456227_x_at	397	4.357	0.0285	No
4	RSU1	1419259_at	872	3.244	0.0168	No
5	IGF2AS	1427394_at	1212	2.805	0.0100	No
6	TANK	1421640_a_at 1441513_at 1459668_at	1645	2.397	-0.0023	No
7	PPARG	1420715_a_at	1758	2.313	-0.0002	No
8	IHPK1	1422968_at 1422969_s_at 1438845_at 1438846_x_at 1452694_at	1823	2.263	0.0039	No
9	NR2F1	1418157_at 1422412_x_at	2246	2.026	-0.0092	No
10	CKM	1417614_at	2272	2.014	-0.0040	No
11	MYL1	1452651_a_at	2518	1.896	-0.0094	No
12	FOSB	1422134_at	2565	1.874	-0.0056	No
13	TGIF	1422286_a_at	2596	1.863	-0.0012	No
14	NPR3	1435184_at 1448024_at 1450286_at	3322	1.615	-0.0294	No
15	SERTAD4	1454877_at	3502	1.562	-0.0328	No
16	EMILIN2	1435264_at	3620	1.522	-0.0334	No
17	CSDA	1435800_a_at 1451012_a_at	3676	1.507	-0.0312	No
18	ADAMTSL1	1430313_at	3728	1.495	-0.0289	No
19	FGF17	1421523_at 1456239_at	3817	1.471	-0.0283	No
20	RASD2	1427343_at 1427344_s_at 1458433_at	4073	1.399	-0.0357	No
21	MAPKAPK2	1426648_at	4175	1.378	-0.0360	No
22	FGF8	1451882_a_at	4207	1.370	-0.0332	No
23	VCL	1416156_at 1416157_at 1445256_at	4357	1.338	-0.0358	No
24	MYL9	1452670_at	4523	1.296	-0.0394	No
25	STAG2	1421849_at 1450396_at	5019	1.195	-0.0584	No
26	CTGF	1416953_at	5024	1.194	-0.0548	No
27	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	5037	1.191	-0.0516	No
28	RHOJ	1418892_at 1444982_at	5109	1.181	-0.0512	No
29	SERPINH1	1450843_a_at 1456733_x_at	5184	1.165	-0.0510	No
30	NLGN3	1456384_at	5293	1.143	-0.0524	No
31	HOXA5	1443803_x_at 1448926_at	5336	1.137	-0.0507	No
32	TMOD1	1419863_at 1422754_at	5581	1.093	-0.0585	No
33	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	5586	1.092	-0.0553	No
34	SRD5A2	1422960_at	5613	1.087	-0.0531	No
35	PLCB3	1448661_at	5728	1.067	-0.0550	No
36	RARB	1454906_at	6055	1.017	-0.0668	No
37	EGR4	1449977_at	6157	1.002	-0.0683	No
38	HOXB5	1418415_at	6257	0.989	-0.0698	No
39	CNN1	1417917_at	6328	0.977	-0.0699	No
40	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	6468	0.956	-0.0733	No
41	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	6475	0.956	-0.0706	No
42	SCOC	1416267_at 1430999_a_at	6881	0.895	-0.0864	No
43	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	7052	0.866	-0.0915	No
44	ROCK2	1423592_at 1451041_at	7312	0.824	-0.1009	No
45	MYL7	1449071_at	7920	0.736	-0.1265	No
46	ASPA	1418472_at	8004	0.724	-0.1280	No
47	DVL3	1420457_at	8252	0.685	-0.1372	No
48	AKAP12	1419706_a_at 1458235_at	8394	0.664	-0.1416	No
49	RAB30	1426452_a_at	8464	0.655	-0.1428	No
50	NPAS2	1421036_at 1421037_at	8496	0.649	-0.1421	No
51	NKX2-2	1421112_at	8544	0.641	-0.1423	No
52	MSX1	1417127_at 1448601_s_at	8600	0.634	-0.1428	No
53	VGF	1436094_at	8619	0.630	-0.1417	No
54	SDPR	1416778_at 1416779_at 1443832_s_at	8627	0.630	-0.1401	No
55	ITGB1BP2	1423238_at	8922	0.588	-0.1517	No
56	INSM1	1421399_at 1455865_at	9202	0.547	-0.1628	No
57	RIMS1	1435667_at 1438305_at 1444393_at	9272	0.535	-0.1643	No
58	HOXA3	1427433_s_at 1441070_at 1452421_at	9440	0.513	-0.1704	No
59	SRF	1418255_s_at 1418256_at	9517	0.501	-0.1723	No
60	CALN1	1425846_a_at	9668	0.481	-0.1777	No
61	MID1	1422055_at 1438239_at 1441929_at 1443666_at	9686	0.478	-0.1770	No
62	EEF1B2	1448252_a_at	9765	0.467	-0.1791	No
63	TNMD	1417979_at	9870	0.452	-0.1825	No
64	GADD45G	1453851_a_at	10051	0.428	-0.1894	No
65	GPR20	1440021_at	10847	0.320	-0.2250	No
66	TAGLN	1423505_at	10992	0.301	-0.2307	No
67	ACTN1	1427385_s_at 1428585_at 1452415_at	11006	0.300	-0.2303	No
68	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	11067	0.292	-0.2322	No
69	SH3BGR	1422644_at	11090	0.288	-0.2323	No
70	CFL1	1448346_at 1455138_x_at	11139	0.280	-0.2336	No
71	TNNC1	1418370_at	11289	0.257	-0.2397	No
72	IL17B	1431693_a_at	11390	0.242	-0.2435	No
73	NPPA	1456062_at	11505	0.225	-0.2480	No
74	EFHD1	1448507_at	11652	0.204	-0.2541	No
75	LRRTM4	1437214_at 1455937_at	11734	0.192	-0.2572	No
76	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	11802	0.182	-0.2597	No
77	CRH	1457984_at	11875	0.170	-0.2625	No
78	JPH2	1421453_at 1455404_at	11942	0.160	-0.2650	No
79	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	12201	0.120	-0.2765	No
80	PPP2R3A	1455198_a_at	12283	0.108	-0.2799	No
81	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	12482	0.079	-0.2888	No
82	MYH11	1418122_at 1448962_at	12555	0.069	-0.2919	No
83	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	12633	0.058	-0.2952	No
84	PODN	1435180_at	12634	0.058	-0.2950	No
85	ATRX	1420945_at 1420946_at 1420947_at 1438750_at 1441014_at 1441771_at 1450051_at 1453734_at 1456832_at	12703	0.047	-0.2980	No
86	TADA3L	1417467_a_at 1448719_at	12851	0.026	-0.3047	No
87	EDN1	1451924_a_at	13187	-0.035	-0.3200	No
88	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	13473	-0.082	-0.3328	No
89	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	13602	-0.103	-0.3384	No
90	DLL1	1419204_at	13684	-0.122	-0.3417	No
91	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	13846	-0.151	-0.3487	No
92	SLC4A3	1418485_at 1453687_at	13905	-0.161	-0.3508	No
93	KCNMB1	1421400_at 1421401_at	14065	-0.189	-0.3575	No
94	MRGPRF	1425894_at	14123	-0.200	-0.3595	No
95	KRTCAP2	1417058_a_at 1417059_at	14729	-0.313	-0.3864	No
96	PPAP2B	1429514_at 1446850_at 1448908_at	14852	-0.339	-0.3909	No
97	ABR	1433477_at	14861	-0.340	-0.3902	No
98	EML4	1429612_at 1447838_x_at	14971	-0.362	-0.3941	No
99	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	15028	-0.374	-0.3955	No
100	HOXD10	1418606_at	15128	-0.391	-0.3988	No
101	ELF4	1421337_at 1445778_at	15166	-0.398	-0.3993	No
102	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	15176	-0.400	-0.3984	No
103	CFL2	1418066_at 1418067_at 1431432_at	15248	-0.416	-0.4004	No
104	FOXE3	1422393_at	15305	-0.430	-0.4016	No
105	MMP14	1416572_at 1448383_at	15390	-0.454	-0.4041	No
106	BNC2	1438861_at 1440593_at 1459132_at	15697	-0.534	-0.4165	No
107	TRIM46	1460568_at	15850	-0.566	-0.4217	No
108	SVIL	1427662_at 1460694_s_at 1460735_at	15863	-0.568	-0.4205	No
109	EGR3	1421486_at 1436329_at	15964	-0.593	-0.4232	No
110	POU3F4	1422164_at 1422165_at	15994	-0.600	-0.4227	No
111	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	16179	-0.650	-0.4291	No
112	HOXC5	1439885_at 1450832_at 1456301_at	16222	-0.663	-0.4289	No
113	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	16303	-0.687	-0.4305	No
114	COL23A1	1429209_at 1429210_at 1440911_at	16459	-0.735	-0.4353	No
115	FGFRL1	1447878_s_at 1451912_a_at	16708	-0.811	-0.4441	No
116	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	16814	-0.846	-0.4463	No
117	ARPC4	1423588_at 1423589_at	16835	-0.852	-0.4446	No
118	SRP54	1430476_at 1441233_at 1441480_at	17202	-0.966	-0.4584	No
119	MAP1A	1460566_at	17460	-1.048	-0.4669	No
120	SORT1	1423362_at 1423363_at 1450955_s_at	17504	-1.067	-0.4656	No
121	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	17579	-1.097	-0.4655	No
122	GRK6	1437436_s_at 1450480_a_at 1451672_at	17587	-1.100	-0.4624	No
123	HOXB4	1451761_at 1460379_at	17605	-1.109	-0.4597	No
124	TGFB1I1	1418136_at	17709	-1.159	-0.4608	No
125	TBL1X	1434643_at 1434644_at 1441435_at 1446736_at 1455042_at	17715	-1.162	-0.4574	No
126	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	17792	-1.193	-0.4572	No
127	DGKG	1419756_at 1431167_at 1449584_at	17873	-1.224	-0.4571	No
128	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	17922	-1.244	-0.4554	No
129	SLC35A2	1422827_x_at 1432533_a_at 1436664_a_at 1439433_a_at 1453858_at 1457024_x_at	17925	-1.244	-0.4516	No
130	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	18076	-1.306	-0.4544	No
131	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18141	-1.333	-0.4532	No
132	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	18149	-1.337	-0.4493	No
133	AGRP	1421690_s_at 1457362_at	18191	-1.361	-0.4469	No
134	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	18259	-1.393	-0.4457	No
135	MYLK	1425504_at 1425505_at 1425506_at	18283	-1.406	-0.4423	No
136	MYL6	1435041_at	18373	-1.448	-0.4419	No
137	KCNK3	1425341_at 1425342_a_at 1426058_a_at	18495	-1.512	-0.4427	No
138	BLOC1S1	1422614_s_at	18772	-1.654	-0.4502	No
139	ARHGEF17	1419938_s_at 1419939_at 1433682_at 1442357_at 1447441_at	18968	-1.770	-0.4537	No
140	TAF5L	1448195_at	19353	-2.044	-0.4649	No
141	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	19560	-2.171	-0.4676	Yes
142	SGK	1416041_at	19615	-2.209	-0.4632	Yes
143	CHD2	1444246_at 1445843_at	19671	-2.253	-0.4587	Yes
144	PFN1	1449018_at	19696	-2.277	-0.4526	Yes
145	ESRRA	1442864_at 1460652_at	19955	-2.536	-0.4566	Yes
146	ACTA1	1427735_a_at	20245	-2.852	-0.4609	Yes
147	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	20277	-2.880	-0.4534	Yes
148	ACTG2	1422340_a_at	20310	-2.918	-0.4457	Yes
149	JMJD1A	1426810_at	20442	-3.078	-0.4421	Yes
150	H2AFX	1416746_at	20570	-3.284	-0.4377	Yes
151	FST	1421365_at 1434458_at	20660	-3.390	-0.4312	Yes
152	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	20692	-3.433	-0.4219	Yes
153	CSRP1	1425810_a_at 1425811_a_at	20752	-3.526	-0.4135	Yes
154	MAP2K6	1426850_a_at 1459292_at	20947	-3.821	-0.4105	Yes
155	CDKN1B	1419497_at 1434045_at	21001	-3.924	-0.4007	Yes
156	MUS81	1431885_a_at 1450432_s_at	21039	-3.984	-0.3899	Yes
157	TAZ	1416207_at 1453785_at	21062	-4.056	-0.3783	Yes
158	FOS	1423100_at	21153	-4.275	-0.3690	Yes
159	PHF12	1434922_at 1453579_at	21235	-4.496	-0.3587	Yes
160	RUNDC1	1454829_at	21331	-4.737	-0.3482	Yes
161	STAT5B	1422102_a_at 1422103_a_at	21397	-4.949	-0.3358	Yes
162	RASSF2	1428392_at 1444889_at	21481	-5.310	-0.3230	Yes
163	NCOA6	1423374_at	21491	-5.351	-0.3067	Yes
164	RERE	1454670_at	21506	-5.419	-0.2904	Yes
165	DUSP6	1415834_at	21510	-5.447	-0.2735	Yes
166	VASP	1451097_at	21523	-5.491	-0.2568	Yes
167	DDX17	1437773_x_at 1439037_at 1452155_a_at	21573	-5.789	-0.2410	Yes
168	JUNB	1415899_at	21600	-5.913	-0.2237	Yes
169	FLNA	1426677_at	21604	-5.948	-0.2053	Yes
170	IER2	1416442_at	21657	-6.231	-0.1882	Yes
171	DUSP5	1437199_at	21667	-6.307	-0.1689	Yes
172	DUSP2	1450698_at	21723	-6.910	-0.1498	Yes
173	NR4A1	1416505_at	21771	-7.733	-0.1278	Yes
174	EGR1	1417065_at	21855	-9.280	-0.1026	Yes
175	MCL1	1416880_at 1416881_at 1437527_x_at 1448503_at 1456243_x_at 1456381_x_at	21868	-9.776	-0.0725	Yes
176	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21906	-11.714	-0.0376	Yes
177	EGR2	1427682_a_at 1427683_at	21928	-12.431	0.0003	Yes