Details for gene set V$NFKB

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$NFKB_C
Enrichment Score (ES)	-0.4323026
Normalized Enrichment Score (NES)	-1.7159241
Nominal p-value	0.0
FDR q-value	0.021579538
FWER p-Value	0.236

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ARHGAP8	1451463_at	720	3.525	-0.0221	No
2	ECT2	1419513_a_at	1151	2.879	-0.0329	No
3	ENO3	1417951_at 1449631_at	1208	2.809	-0.0268	No
4	DNAJA1	1416288_at 1437220_x_at 1445729_at 1459835_s_at 1460179_at	1474	2.546	-0.0310	No
5	UACA	1452985_at	1926	2.204	-0.0449	No
6	PCSK2	1428305_at 1444147_at 1447991_at 1447992_s_at 1448312_at	2036	2.136	-0.0432	No
7	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	2044	2.134	-0.0369	No
8	IL2RA	1420691_at 1420692_at	2056	2.126	-0.0308	No
9	NUP153	1441689_at 1441733_s_at 1452176_at	2075	2.114	-0.0250	No
10	TCEA2	1418107_at 1440791_x_at	2297	2.003	-0.0289	No
11	PAPPA	1427633_a_at 1432591_at 1432592_at 1459375_at	2410	1.947	-0.0280	No
12	LRRFIP2	1436378_at 1436510_a_at	2856	1.768	-0.0430	No
13	PTHLH	1422324_a_at 1427527_a_at	2996	1.720	-0.0440	No
14	XPO6	1422759_a_at 1440492_at 1443737_at	3064	1.694	-0.0418	No
15	ARHGAP5	1423194_at 1450896_at 1450897_at 1457410_at	3170	1.658	-0.0414	No
16	SEC14L2	1424530_at	3176	1.658	-0.0365	No
17	TRIB2	1426640_s_at 1426641_at 1459852_x_at	3549	1.546	-0.0488	No
18	EDG5	1428176_at 1447880_x_at	3562	1.540	-0.0445	No
19	SEMA3B	1416644_a_at 1431795_a_at 1448415_a_at	3581	1.533	-0.0406	No
20	FOXD2	1450289_at	3618	1.522	-0.0375	No
21	FGF17	1421523_at 1456239_at	3817	1.471	-0.0420	No
22	EIF5A	1437859_x_at 1451470_s_at	4206	1.370	-0.0556	No
23	SMPD3	1422779_at 1438665_at 1445759_at 1450748_at	4355	1.338	-0.0582	No
24	BLR1	1422003_at	4434	1.316	-0.0577	No
25	ZADH2	1451277_at	4506	1.298	-0.0569	No
26	GABPB2	1440289_at 1440868_at 1443942_at 1453682_at 1455110_at	4599	1.277	-0.0572	No
27	PCBP4	1433658_x_at 1449054_a_at 1449055_x_at	4662	1.263	-0.0561	No
28	IFNB1	1422305_at	4823	1.233	-0.0596	No
29	CTGF	1416953_at	5024	1.194	-0.0651	No
30	SOX3	1435192_at 1450485_at	5175	1.168	-0.0683	No
31	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	5235	1.156	-0.0674	No
32	CLCN1	1427591_at 1448082_at	5240	1.155	-0.0640	No
33	SP6	1427786_at 1427787_at 1437788_at 1442342_at	5273	1.148	-0.0619	No
34	FUT7	1420756_at	5328	1.139	-0.0609	No
35	CDC37	1416819_at 1416820_at	5342	1.136	-0.0579	No
36	CDH5	1422047_at 1433956_at	5640	1.083	-0.0682	No
37	ANP32A	1421918_at 1434555_at 1450407_a_at	5769	1.062	-0.0708	No
38	FOXD3	1422210_at	5914	1.039	-0.0742	No
39	TRIM47	1426784_at	6192	0.999	-0.0838	No
40	IL13	1420802_at	6196	0.998	-0.0808	No
41	DDR1	1415797_at 1415798_at 1435820_x_at 1437619_x_at 1438367_x_at 1439382_x_at 1456226_x_at 1459990_at	6425	0.963	-0.0883	No
42	LIN28	1437752_at	6538	0.947	-0.0905	No
43	OPCML	1435612_at 1442752_at 1457446_at 1458228_at	6573	0.942	-0.0891	No
44	JPH3	1418161_at 1443724_at	6620	0.934	-0.0883	No
45	LAMB3	1417812_a_at	6640	0.929	-0.0863	No
46	MSC	1418417_at	6753	0.913	-0.0886	No
47	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	6762	0.911	-0.0861	No
48	CCDC8	1444761_at	6773	0.910	-0.0837	No
49	LASP1	1438633_x_at 1438634_x_at 1439264_x_at 1444947_at 1448207_at 1455470_x_at 1456309_x_at 1456469_x_at 1456578_x_at 1460173_at	6972	0.881	-0.0901	No
50	PLP1	1425467_a_at 1425468_at 1451718_at	7015	0.872	-0.0893	No
51	NDRG2	1448154_at	7101	0.859	-0.0906	No
52	GRK5	1446361_at 1446998_at 1449514_at	7153	0.851	-0.0902	No
53	SCRT2	1440930_a_at 1440931_at 1446986_at 1457310_x_at	7390	0.811	-0.0986	No
54	WRN	1425074_at 1425982_a_at 1450163_a_at	7800	0.754	-0.1150	No
55	MAP3K13	1430137_at 1440749_at 1447699_at	7858	0.745	-0.1153	No
56	HOXB9	1452317_at	7957	0.732	-0.1176	No
57	SLC6A12	1449382_at	8021	0.722	-0.1182	No
58	COL11A2	1423578_at	8212	0.692	-0.1248	No
59	HOXB6	1451660_a_at	8296	0.679	-0.1265	No
60	VNN3	1420723_at	8306	0.677	-0.1248	No
61	BCKDK	1443813_x_at 1460644_at	8367	0.668	-0.1255	No
62	TSLP	1450004_at	8554	0.639	-0.1320	No
63	ASCL3	1420780_at	8574	0.637	-0.1309	No
64	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	8589	0.635	-0.1296	No
65	MSX1	1417127_at 1448601_s_at	8600	0.634	-0.1281	No
66	BAI2	1435558_at	8904	0.590	-0.1402	No
67	GRIN2D	1421393_at	9066	0.567	-0.1458	No
68	NFKBIB	1421266_s_at 1446718_at	9147	0.553	-0.1478	No
69	CHX10	1419628_at	9167	0.551	-0.1469	No
70	HOXA11	1420414_at	9258	0.537	-0.1494	No
71	FGF1	1423136_at 1441042_at 1450869_at	9331	0.527	-0.1511	No
72	BMF	1422995_at 1454880_s_at 1458325_x_at	9568	0.494	-0.1604	No
73	PURG	1424970_at 1452029_a_at	9595	0.491	-0.1600	No
74	IL1RN	1423017_a_at 1425663_at 1451798_at	9632	0.486	-0.1602	No
75	CGGBP1	1454641_at 1455658_at	10117	0.421	-0.1811	No
76	EGF	1418093_a_at	10299	0.397	-0.1882	No
77	EFNA3	1431170_at 1455344_at	10314	0.395	-0.1876	No
78	RGL1	1418535_at 1440662_at 1449124_at	10427	0.378	-0.1916	No
79	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	10443	0.375	-0.1911	No
80	IL1A	1421473_at	10486	0.369	-0.1919	No
81	FOXA3	1431900_a_at	10547	0.360	-0.1935	No
82	EHF	1419474_a_at 1419475_a_at 1447760_x_at 1451375_at	10798	0.327	-0.2040	No
83	CHD4	1436343_at 1438476_a_at 1451295_a_at	11358	0.246	-0.2290	No
84	WNT10A	1460657_at	11392	0.241	-0.2297	No
85	BHLHB2	1418025_at	11517	0.223	-0.2347	No
86	MRPS6	1424440_at 1447585_s_at	11772	0.187	-0.2459	No
87	GPHN	1426462_at 1426463_at 1430038_at 1444869_at 1445188_at 1458242_at	12048	0.144	-0.2581	No
88	AGC1	1449827_at	12243	0.113	-0.2666	No
89	TSNAXIP1	1427018_at	12257	0.112	-0.2669	No
90	BCL2L1	1420887_a_at 1420888_at 1426050_at 1426191_a_at	12302	0.105	-0.2686	No
91	C1QL1	1422777_at	12329	0.101	-0.2695	No
92	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	12645	0.057	-0.2838	No
93	IL1RAPL1	1445821_at 1458964_at	12936	0.010	-0.2971	No
94	SESN2	1425139_at 1451599_at	12939	0.009	-0.2971	No
95	DACH2	1449823_at 1458012_at	13051	-0.012	-0.3022	No
96	CENTB5	1439021_at	13209	-0.038	-0.3093	No
97	CD74	1425519_a_at	13586	-0.100	-0.3263	No
98	HSD3B7	1416968_a_at 1442912_at	13648	-0.112	-0.3288	No
99	ALG6	1439007_at 1459337_at	13848	-0.151	-0.3375	No
100	SMARCAD1	1435651_a_at 1440066_at 1452276_at	14074	-0.191	-0.3472	No
101	UBE2I	1422712_a_at 1422713_a_at 1425478_x_at 1453189_at	14112	-0.198	-0.3483	No
102	ARPC5	1444568_at 1448129_at	14165	-0.206	-0.3500	No
103	LCAT	1417043_at	14167	-0.207	-0.3494	No
104	PTGS2	1417262_at 1417263_at	14273	-0.228	-0.3536	No
105	RAD18	1423318_at 1435826_at 1443954_at 1451928_a_at	14287	-0.230	-0.3534	No
106	KCNQ5	1427426_at 1441071_at	14345	-0.243	-0.3553	No
107	MAML2	1446570_at 1447546_s_at	14534	-0.276	-0.3631	No
108	DCAMKL1	1423125_at 1424270_at 1424271_at 1436659_at 1446190_at 1450863_a_at 1451289_at 1451917_a_at	14776	-0.324	-0.3732	No
109	IL23A	1419529_at	15040	-0.376	-0.3841	No
110	GNA13	1422555_s_at 1422556_at 1430295_at 1433749_at 1446722_at 1450656_at 1453470_a_at 1460317_s_at	15145	-0.394	-0.3877	No
111	PTGES	1439747_at 1449449_at 1449450_at	15149	-0.395	-0.3866	No
112	RALGDS	1460634_at	15165	-0.398	-0.3860	No
113	TYRO3	1425248_a_at 1425249_a_at	15357	-0.445	-0.3934	No
114	PLA1A	1417785_at	15633	-0.517	-0.4045	No
115	DAP3	1450848_at	15675	-0.528	-0.4047	No
116	PHF6	1430415_at 1453761_at 1454625_at	15687	-0.532	-0.4035	No
117	GNAO1	1421152_a_at 1448031_at 1460383_at	15698	-0.534	-0.4023	No
118	SNAP25	1416828_at 1443398_at	15752	-0.547	-0.4031	No
119	DUSP22	1441723_at 1448985_at	15933	-0.584	-0.4095	No
120	EGR3	1421486_at 1436329_at	15964	-0.593	-0.4091	No
121	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	16176	-0.649	-0.4167	No
122	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	16190	-0.655	-0.4153	No
123	RND1	1455197_at	16347	-0.700	-0.4203	No
124	TAL1	1449389_at	16388	-0.712	-0.4199	No
125	SLC34A3	1439519_at	16395	-0.713	-0.4180	No
126	ITGB8	1436223_at	16396	-0.713	-0.4157	No
127	RIN2	1426368_at 1441209_at 1442829_at	16421	-0.721	-0.4146	No
128	PPP2R5E	1428461_at 1428462_at 1428463_a_at 1439401_x_at 1443533_at 1443949_at 1446356_at 1452788_at	16471	-0.737	-0.4146	No
129	CXCL10	1418930_at	16482	-0.740	-0.4127	No
130	ITGB4	1427387_a_at	16485	-0.741	-0.4105	No
131	SIX5	1427560_at	16630	-0.787	-0.4147	No
132	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	16651	-0.796	-0.4131	No
133	LCN2	1427747_a_at	16673	-0.804	-0.4116	No
134	MOBKL2C	1440919_at 1459919_a_at	16853	-0.856	-0.4171	No
135	RHOA	1437628_s_at	16868	-0.859	-0.4151	No
136	PRKCD	1422847_a_at 1442256_at	16936	-0.882	-0.4154	No
137	SOX10	1424985_a_at 1425369_a_at 1451689_a_at	17054	-0.921	-0.4179	No
138	RAB10	1422664_at 1429296_at 1442463_at 1453095_at	17100	-0.937	-0.4171	No
139	MAG	1460219_at	17271	-0.989	-0.4218	No
140	JAK3	1425750_a_at 1446515_at	17349	-1.014	-0.4222	No
141	LYPLA2	1417433_at	17358	-1.018	-0.4194	No
142	MAP3K8	1419208_at	17444	-1.043	-0.4200	No
143	CYLD	1429617_at 1429618_at 1445213_at	17466	-1.050	-0.4177	No
144	CUEDC1	1425920_at 1435358_at 1443455_at 1451447_at	17511	-1.069	-0.4164	No
145	TNFSF7	1449926_at	17561	-1.090	-0.4153	No
146	VCAM1	1415989_at 1436003_at 1448162_at 1451314_a_at	17633	-1.118	-0.4151	No
147	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	17907	-1.238	-0.4238	No
148	IER5	1417612_at 1417613_at	17981	-1.269	-0.4232	No
149	SYMPK	1428673_at	17984	-1.271	-0.4193	No
150	ID2	1422537_a_at 1435176_a_at 1453596_at	18268	-1.399	-0.4279	Yes
151	TCTA	1420123_at 1420124_s_at 1420125_at 1424068_at	18285	-1.408	-0.4243	Yes
152	IL18R1	1421628_at	18315	-1.425	-0.4212	Yes
153	SNX15	1424337_at 1456649_at 1458021_at	18389	-1.459	-0.4200	Yes
154	GATA4	1418863_at 1418864_at 1441364_at	18416	-1.471	-0.4166	Yes
155	RANBP10	1424584_a_at 1424585_at 1446446_at	18518	-1.524	-0.4165	Yes
156	NLK	1419112_at 1435970_at 1443279_at 1445427_at 1456467_s_at	18764	-1.649	-0.4226	Yes
157	AMOTL1	1428785_at 1431121_at 1446909_at 1455247_at	18808	-1.672	-0.4194	Yes
158	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	18822	-1.681	-0.4147	Yes
159	PPP1R13B	1434895_s_at 1442956_at 1459224_at	18826	-1.682	-0.4096	Yes
160	STAT6	1421708_a_at 1426353_at	18962	-1.762	-0.4103	Yes
161	PIGC	1424189_at 1424190_at	19147	-1.901	-0.4129	Yes
162	RHOG	1422572_at	19155	-1.907	-0.4072	Yes
163	SLAMF8	1425294_at	19158	-1.908	-0.4014	Yes
164	SIRT2	1423507_a_at	19236	-1.972	-0.3988	Yes
165	GNG4	1417943_at 1417944_at 1447669_s_at	19246	-1.976	-0.3930	Yes
166	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	19580	-2.185	-0.4015	Yes
167	PFN1	1449018_at	19696	-2.277	-0.3997	Yes
168	MNT	1418192_at	19727	-2.306	-0.3939	Yes
169	RAP2C	1428119_a_at 1437016_x_at 1460430_at	19804	-2.383	-0.3900	Yes
170	S100A10	1416762_at 1439348_at 1456642_x_at	19813	-2.392	-0.3829	Yes
171	IL4I1	1419192_at	19954	-2.535	-0.3814	Yes
172	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	20296	-2.903	-0.3880	Yes
173	NFKB2	1425902_a_at 1429128_x_at	20307	-2.917	-0.3794	Yes
174	ASH1L	1420985_at 1441117_at 1450071_at 1450072_at	20423	-3.057	-0.3752	Yes
175	UNC84B	1433832_at 1439238_at	20478	-3.124	-0.3679	Yes
176	IRF1	1448436_a_at	20504	-3.165	-0.3592	Yes
177	LRCH1	1438032_at 1442502_at 1442757_at 1445396_at 1447746_at 1459150_at	20578	-3.292	-0.3523	Yes
178	BCL3	1418133_at	20646	-3.380	-0.3448	Yes
179	FLI1	1422024_at 1433512_at 1441584_at	20689	-3.428	-0.3360	Yes
180	ICAM1	1424067_at	20776	-3.566	-0.3289	Yes
181	BDNF	1422168_a_at 1422169_a_at	20807	-3.621	-0.3190	Yes
182	HCFC1	1421972_s_at 1433736_at 1445688_at 1446868_at 1450439_at 1457875_at	20831	-3.657	-0.3086	Yes
183	ZHX2	1455210_at	21013	-3.937	-0.3047	Yes
184	TAZ	1416207_at 1453785_at	21062	-4.056	-0.2942	Yes
185	FOS	1423100_at	21153	-4.275	-0.2850	Yes
186	BAHD1	1433703_s_at	21159	-4.285	-0.2719	Yes
187	GADD45B	1420197_at 1449773_s_at 1450971_at	21323	-4.709	-0.2647	Yes
188	CCL22	1417925_at	21380	-4.869	-0.2521	Yes
189	SLC43A1	1440007_at 1453255_at	21469	-5.259	-0.2397	Yes
190	IL27RA	1449508_at	21556	-5.694	-0.2259	Yes
191	USP52	1426700_a_at	21560	-5.702	-0.2083	Yes
192	DDX17	1437773_x_at 1439037_at 1452155_a_at	21573	-5.789	-0.1908	Yes
193	FOXJ2	1420373_at 1420374_at	21578	-5.821	-0.1728	Yes
194	RORC	1425792_a_at 1425793_a_at	21592	-5.874	-0.1551	Yes
195	TNIP1	1427689_a_at	21690	-6.558	-0.1391	Yes
196	LTB	1419135_at	21784	-7.914	-0.1187	Yes
197	CCL5	1418126_at	21821	-8.504	-0.0938	Yes
198	SMOC1	1448321_at	21857	-9.327	-0.0663	Yes
199	EPHB6	1418051_at	21873	-9.937	-0.0360	Yes
200	EGR2	1427682_a_at 1427683_at	21928	-12.431	0.0003	Yes