Details for gene set V$LFA1

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$LFA1_Q6
Enrichment Score (ES)	-0.42566597
Normalized Enrichment Score (NES)	-1.6718742
Nominal p-value	0.0013908206
FDR q-value	0.033278592
FWER p-Value	0.369

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CEBPB	1418901_at 1427844_a_at	86	6.374	0.0159	No
2	IFRD2	1451016_at	320	4.676	0.0197	No
3	BAX	1416837_at	419	4.277	0.0285	No
4	HES1	1418102_at	466	4.126	0.0392	No
5	NACA	1416669_s_at	470	4.124	0.0519	No
6	STOML2	1448774_at	569	3.816	0.0593	No
7	M6PR	1416385_a_at 1416386_a_at	886	3.222	0.0547	No
8	ADM	1416077_at 1447839_x_at	1034	3.010	0.0573	No
9	PALM	1422034_a_at 1423967_at 1439927_at 1457217_at	1173	2.847	0.0599	No
10	DLX1	1449470_at	1422	2.598	0.0565	No
11	POU4F1	1429667_at 1429668_at	1635	2.402	0.0543	No
12	MRPL40	1448849_at	1796	2.281	0.0540	No
13	TCF7	1433471_at 1450461_at	1964	2.183	0.0531	No
14	TPCN1	1434930_at 1451771_at 1451772_at	2199	2.047	0.0487	No
15	HNRPR	1427129_a_at 1438807_at 1452030_a_at	2545	1.882	0.0387	No
16	PDLIM7	1417959_at 1428319_at 1443785_x_at	2659	1.838	0.0392	No
17	SLC2A4	1415958_at 1415959_at	2738	1.810	0.0413	No
18	SIX4	1425767_a_at 1427701_a_at 1439753_x_at 1456862_at	2796	1.789	0.0442	No
19	HARS2	1446462_at 1447677_x_at 1451040_at	2813	1.780	0.0490	No
20	NPAS3	1421567_at 1429138_at 1438060_at 1450287_at	3094	1.684	0.0414	No
21	LRP8	1421459_a_at 1440882_at 1442347_at	3321	1.615	0.0360	No
22	NEUROG1	1438551_at 1450836_at	3335	1.611	0.0404	No
23	GRIN2A	1421616_at	3362	1.601	0.0442	No
24	ADAMTS4	1452595_at	3426	1.585	0.0462	No
25	PRRX1	1425526_a_at 1425527_at 1425528_at 1432129_a_at 1439774_at 1458004_at	3614	1.525	0.0424	No
26	MYOG	1419391_at	3664	1.510	0.0448	No
27	KCNQ4	1435721_at 1442909_at	3765	1.485	0.0448	No
28	GABRG2	1418177_at 1437147_at	4049	1.406	0.0362	No
29	OBSCN	1443632_at	4086	1.397	0.0389	No
30	FES	1427368_x_at 1452410_a_at	4379	1.333	0.0296	No
31	GAD1	1416561_at 1416562_at	4486	1.303	0.0288	No
32	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	4569	1.285	0.0290	No
33	OTOP2	1443043_at	4730	1.251	0.0255	No
34	CTGF	1416953_at	5024	1.194	0.0158	No
35	NGFB	1419675_at	5483	1.110	-0.0018	No
36	ROM1	1448996_at	5488	1.110	0.0014	No
37	CLTC	1419407_at 1439094_at 1440457_at 1454626_at	5580	1.093	0.0007	No
38	EMILIN1	1416414_at 1431834_a_at	5622	1.086	0.0022	No
39	HOXC6	1427361_at 1427362_x_at 1427454_at	5641	1.083	0.0047	No
40	ZFPM1	1423603_at 1451046_at	5836	1.050	-0.0010	No
41	ACVR1C	1428032_at 1443225_at	6065	1.016	-0.0083	No
42	PNOC	1425892_a_at	6278	0.985	-0.0150	No
43	PAK1IP1	1423766_at 1430875_a_at	6333	0.976	-0.0144	No
44	BACE1	1421824_at 1421825_at 1436956_at 1450384_at 1455826_a_at	6465	0.957	-0.0175	No
45	LIN28	1437752_at	6538	0.947	-0.0178	No
46	LMOD3	1439658_at	6778	0.909	-0.0260	No
47	DHH	1422127_at 1434959_at	6800	0.907	-0.0241	No
48	GPR3	1460275_at	6851	0.900	-0.0236	No
49	S100A5	1449927_at	6906	0.891	-0.0234	No
50	MOV10	1416380_at 1447376_at	7206	0.842	-0.0345	No
51	FXYD3	1418374_at	7354	0.818	-0.0387	No
52	PPP1R16A	1452724_at 1459751_s_at	7362	0.816	-0.0365	No
53	SEMA6A	1421414_a_at 1425903_at 1436458_at	7372	0.815	-0.0344	No
54	PLA2G10	1451502_at	7427	0.806	-0.0343	No
55	NR5A2	1420410_at 1449706_s_at 1449707_at	7646	0.774	-0.0419	No
56	UQCRC1	1428782_a_at	7782	0.757	-0.0458	No
57	GPR4	1457745_at	7837	0.748	-0.0460	No
58	PDYN	1416266_at	7891	0.739	-0.0461	No
59	IMMT	1429533_at 1429534_a_at 1433470_a_at 1437126_at	8191	0.694	-0.0577	No
60	NEURL	1422251_at 1451872_a_at 1453527_a_at 1456854_at 1458561_at 1460343_at	8268	0.683	-0.0591	No
61	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	8303	0.677	-0.0585	No
62	ETV1	1422607_at 1445314_at 1450684_at	8590	0.635	-0.0697	No
63	MSX1	1417127_at 1448601_s_at	8600	0.634	-0.0681	No
64	CNKSR2	1444513_at 1445194_at	8615	0.631	-0.0668	No
65	PLA2G4D	1453405_at	8746	0.613	-0.0709	No
66	PSD	1435780_at	8943	0.584	-0.0781	No
67	CHX10	1419628_at	9167	0.551	-0.0866	No
68	SESN3	1449303_at 1453313_at	9314	0.529	-0.0917	No
69	BOC	1426869_at 1427516_a_at 1427517_at	9610	0.489	-0.1037	No
70	RASL12	1428067_at	9890	0.449	-0.1152	No
71	HEBP1	1418172_at 1457903_at	9896	0.448	-0.1140	No
72	CAV1	1449145_a_at	9897	0.448	-0.1126	No
73	PPY	1420440_at	9966	0.439	-0.1144	No
74	NPTXR	1421181_at 1434270_at 1450147_at	10141	0.418	-0.1211	No
75	CCNL1	1423622_a_at 1437383_at	10182	0.413	-0.1216	No
76	EFNA3	1431170_at 1455344_at	10314	0.395	-0.1264	No
77	TRIP10	1418092_s_at	10357	0.390	-0.1271	No
78	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	10443	0.375	-0.1299	No
79	SMAD3	1450471_at 1450472_s_at 1454960_at	10548	0.360	-0.1335	No
80	ARHGEF15	1440358_at 1455522_at 1457172_at	10597	0.351	-0.1346	No
81	CACNA1G	1423365_at	10623	0.347	-0.1347	No
82	CASQ2	1422529_s_at	10970	0.303	-0.1497	No
83	UBL3	1423461_a_at	10985	0.301	-0.1494	No
84	RBBP6	1425114_at 1425115_at 1425421_at 1426487_a_at 1453611_at	10990	0.301	-0.1486	No
85	SH3BP1	1460222_at	11428	0.236	-0.1680	No
86	RAB31	1416165_at 1431691_a_at	11473	0.230	-0.1693	No
87	JPH4	1439031_at	11489	0.228	-0.1693	No
88	SALL1	1450489_at	11540	0.221	-0.1709	No
89	SP7	1418425_at	11600	0.213	-0.1729	No
90	WNT4	1450782_at	11604	0.212	-0.1724	No
91	NYX	1446344_at	11624	0.209	-0.1726	No
92	NPC2	1416901_at 1443266_at 1448513_a_at 1455768_at	11760	0.188	-0.1783	No
93	MYBPH	1419487_at	11809	0.181	-0.1799	No
94	KLK9	1431681_at	12369	0.096	-0.2053	No
95	UPF2	1435030_at 1445777_at	12478	0.080	-0.2100	No
96	FLT1	1419300_at 1440926_at 1451756_at 1454037_a_at	12488	0.078	-0.2102	No
97	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	12645	0.057	-0.2172	No
98	ACCN1	1417994_a_at	12780	0.036	-0.2232	No
99	OLFML2A	1441635_at 1455743_at	12981	0.001	-0.2324	No
100	FKBP2	1450694_at	13011	-0.004	-0.2338	No
101	SLC7A10	1421093_at	13513	-0.089	-0.2565	No
102	SLC13A5	1459729_at	13536	-0.093	-0.2572	No
103	KCNAB1	1448468_a_at 1454043_a_at	13630	-0.109	-0.2612	No
104	GSS	1441931_x_at 1448273_at	13698	-0.125	-0.2639	No
105	TBR1	1416711_at	13906	-0.161	-0.2729	No
106	PCBP2	1421743_a_at 1435881_at	13914	-0.162	-0.2727	No
107	PRKCBP1	1426614_at 1429415_at 1445827_at 1456143_at 1458617_at	14038	-0.185	-0.2778	No
108	LCAT	1417043_at	14167	-0.207	-0.2830	No
109	CLIC5	1431261_at 1439505_at 1456873_at 1458381_at	14321	-0.239	-0.2893	No
110	HBLD1	1424154_a_at	14494	-0.270	-0.2964	No
111	HIRA	1436241_s_at 1450049_a_at 1450050_at 1459103_at	14552	-0.278	-0.2981	No
112	NXF1	1416791_a_at	14608	-0.289	-0.2998	No
113	TUBA4	1417373_a_at 1417374_at 1417375_at	14779	-0.324	-0.3066	No
114	TITF1	1422346_at	14890	-0.346	-0.3106	No
115	CACNB1	1425777_at 1426108_s_at 1440940_at 1451834_at	14916	-0.351	-0.3106	No
116	PTRF	1421431_at 1424130_a_at 1453891_at	14953	-0.359	-0.3112	No
117	HOXC10	1439798_at	15095	-0.386	-0.3164	No
118	ELF4	1421337_at 1445778_at	15166	-0.398	-0.3184	No
119	RHO	1425171_at 1425172_at 1451617_at 1451618_at	15349	-0.441	-0.3254	No
120	NKX2-3	1425827_at 1427741_x_at 1452528_a_at	15414	-0.459	-0.3269	No
121	ZNF385	1418865_at	15683	-0.532	-0.3376	No
122	BNC2	1438861_at 1440593_at 1459132_at	15697	-0.534	-0.3365	No
123	GNAO1	1421152_a_at 1448031_at 1460383_at	15698	-0.534	-0.3349	No
124	ARID1A	1447104_at	15769	-0.549	-0.3364	No
125	NDUFS2	1451096_at	16183	-0.653	-0.3533	No
126	PLEC1	1419835_s_at 1434610_at 1437554_at	16290	-0.685	-0.3561	No
127	TAL1	1449389_at	16388	-0.712	-0.3583	No
128	DMPK	1422989_a_at 1434944_at	16413	-0.719	-0.3572	No
129	IL1F10	1451957_at	16562	-0.762	-0.3616	No
130	RBM12	1416928_at 1416929_at 1456964_at 1457934_at	16608	-0.777	-0.3613	No
131	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	16651	-0.796	-0.3607	No
132	ASXL1	1434561_at 1435077_at 1458380_at	16671	-0.804	-0.3591	No
133	TUBA3	1438611_at	16880	-0.863	-0.3660	No
134	NRGN	1423231_at	17080	-0.930	-0.3723	No
135	TNRC4	1452851_at	17122	-0.944	-0.3712	No
136	ARID4A	1436191_at 1438464_at 1456420_at	17387	-1.026	-0.3802	No
137	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	17579	-1.097	-0.3855	No
138	PAX7	1444596_at 1452510_at	17622	-1.115	-0.3840	No
139	KIF1C	1424747_at 1426325_at	17851	-1.214	-0.3907	No
140	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	17937	-1.251	-0.3907	No
141	ANXA4	1421223_a_at 1424176_a_at 1443341_at 1457658_x_at	18083	-1.308	-0.3933	No
142	RFX4	1432053_at 1436931_at 1443312_at	18279	-1.405	-0.3979	No
143	PYGO2	1428249_at	18305	-1.420	-0.3946	No
144	NCDN	1416852_a_at 1416853_at	18844	-1.689	-0.4141	No
145	AKT3	1422078_at 1435260_at 1435879_at 1443222_at 1460307_at	19096	-1.860	-0.4199	Yes
146	LAG3	1449911_at	19130	-1.887	-0.4155	Yes
147	RHOG	1422572_at	19155	-1.907	-0.4107	Yes
148	POLD4	1427885_at	19431	-2.091	-0.4168	Yes
149	RABGGTA	1426046_a_at	19437	-2.094	-0.4106	Yes
150	LZTS2	1426409_at	19479	-2.114	-0.4059	Yes
151	RAB5C	1424684_at	19524	-2.148	-0.4012	Yes
152	RASGRP2	1417804_at 1438932_at 1438933_x_at 1442264_at 1449613_at	19553	-2.165	-0.3958	Yes
153	CREB3L2	1437396_at 1442080_at 1452381_at	19572	-2.180	-0.3898	Yes
154	BCL11B	1440137_at 1441762_at 1450339_a_at	19703	-2.283	-0.3887	Yes
155	MNT	1418192_at	19727	-2.306	-0.3826	Yes
156	DLGAP4	1426465_at 1455548_at	19762	-2.342	-0.3769	Yes
157	SLC25A29	1423979_a_at 1423980_at 1423981_x_at 1438187_at 1438188_x_at	19917	-2.500	-0.3762	Yes
158	MGEA5	1422900_at 1422901_at 1422902_s_at 1433654_at 1439081_at	20154	-2.753	-0.3785	Yes
159	RAB4B	1451643_a_at	20306	-2.916	-0.3763	Yes
160	RAB1B	1424064_at	20323	-2.941	-0.3679	Yes
161	DCTN1	1422521_at 1435414_s_at	20326	-2.947	-0.3589	Yes
162	MAZ	1427099_at	20396	-3.020	-0.3526	Yes
163	CRMP1	1448289_at	20452	-3.090	-0.3456	Yes
164	PRDM10	1441764_at 1444812_at	20596	-3.306	-0.3419	Yes
165	COX7A2L	1421772_a_at 1432263_a_at 1432264_x_at	20614	-3.327	-0.3323	Yes
166	CXCR4	1448710_at	20678	-3.415	-0.3246	Yes
167	FLI1	1422024_at 1433512_at 1441584_at	20689	-3.428	-0.3144	Yes
168	GABARAP	1416937_at	20951	-3.828	-0.3145	Yes
169	CNN2	1450981_at	21010	-3.935	-0.3049	Yes
170	BAHD1	1433703_s_at	21159	-4.285	-0.2984	Yes
171	GBA2	1419980_at 1434271_at	21201	-4.412	-0.2865	Yes
172	PHF12	1434922_at 1453579_at	21235	-4.496	-0.2741	Yes
173	SMARCD2	1426192_at 1448400_a_at 1448401_at	21350	-4.786	-0.2644	Yes
174	BRPF1	1460402_at	21424	-5.057	-0.2521	Yes
175	CPNE1	1433439_at	21435	-5.091	-0.2367	Yes
176	VASP	1451097_at	21523	-5.491	-0.2236	Yes
177	EDG1	1423571_at	21529	-5.520	-0.2067	Yes
178	DDX17	1437773_x_at 1439037_at 1452155_a_at	21573	-5.789	-0.1906	Yes
179	CIC	1415746_at	21711	-6.821	-0.1757	Yes
180	TUBA1	1418884_x_at	21729	-7.008	-0.1547	Yes
181	NR4A1	1416505_at	21771	-7.733	-0.1326	Yes
182	CKB	1455106_a_at	21869	-9.804	-0.1065	Yes
183	ZFP36	1452519_a_at	21884	-10.672	-0.0740	Yes
184	BCL6	1421818_at 1450381_a_at	21907	-11.718	-0.0386	Yes
185	DPF2	1416534_at 1429903_at	21932	-12.783	0.0001	Yes