Details for gene set V$E2F

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	V$E2F_Q3
Enrichment Score (ES)	0.29216793
Normalized Enrichment Score (NES)	1.2593582
Nominal p-value	0.04731861
FDR q-value	0.2207783
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TCP1	1442317_at 1448122_at	7	9.127	0.0323	Yes
2	MCM4	1416214_at 1436708_x_at	94	6.274	0.0508	Yes
3	MCM6	1416251_at 1438852_x_at 1447756_x_at	95	6.259	0.0732	Yes
4	PRPS1	1416052_at	244	5.034	0.0845	Yes
5	USP1	1423674_at 1423675_at 1451080_at	376	4.444	0.0943	Yes
6	RBBP7	1415775_at 1456227_x_at	397	4.357	0.1090	Yes
7	MRPL18	1448373_at	420	4.267	0.1233	Yes
8	TOPBP1	1452241_at 1458480_at	429	4.243	0.1381	Yes
9	UFD1L	1418087_at 1432367_a_at	452	4.173	0.1520	Yes
10	PCSK4	1425824_a_at	503	4.009	0.1641	Yes
11	RANBP1	1422547_at	570	3.814	0.1747	Yes
12	EZH2	1416544_at 1444263_at	581	3.793	0.1878	Yes
13	GMNN	1417506_at	688	3.583	0.1957	Yes
14	RAD51	1418281_at	804	3.364	0.2025	Yes
15	UNG	1425753_a_at	811	3.351	0.2142	Yes
16	CPNE5	1442166_at	871	3.245	0.2231	Yes
17	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	904	3.185	0.2330	Yes
18	LIG1	1416641_at	927	3.145	0.2433	Yes
19	CDC25A	1417131_at 1417132_at 1445995_at	1192	2.824	0.2413	Yes
20	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	1203	2.812	0.2509	Yes
21	CDCA7	1428069_at 1445681_at	1268	2.749	0.2578	Yes
22	PCNA	1417947_at	1322	2.702	0.2650	Yes
23	ABCF2	1423863_at	1595	2.433	0.2612	Yes
24	UXT	1418986_a_at	1806	2.274	0.2597	Yes
25	SHMT1	1422198_a_at 1425177_at 1425178_s_at 1425179_at	1847	2.249	0.2659	Yes
26	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	1925	2.205	0.2703	Yes
27	OLFML3	1448475_at	2021	2.143	0.2736	Yes
28	E2F3	1427462_at 1434564_at	2059	2.126	0.2795	Yes
29	NUP153	1441689_at 1441733_s_at 1452176_at	2075	2.114	0.2864	Yes
30	IMPDH2	1415851_a_at 1415852_at	2180	2.056	0.2890	Yes
31	RFC1	1418342_at 1449050_at 1451920_a_at	2268	2.015	0.2922	Yes
32	SNPH	1435210_s_at	2890	1.755	0.2699	No
33	POLE2	1427094_at 1431440_at	2947	1.735	0.2736	No
34	NPR3	1435184_at 1448024_at 1450286_at	3322	1.615	0.2622	No
35	EPHB1	1455188_at	3367	1.598	0.2659	No
36	DPYSL2	1433770_at 1450502_at 1458188_at 1458632_at	3380	1.595	0.2710	No
37	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	3406	1.589	0.2756	No
38	MCM8	1429557_at	3854	1.456	0.2602	No
39	POLA2	1425794_at 1448369_at 1456713_at	4282	1.356	0.2455	No
40	KBTBD7	1428192_at 1439865_at 1452700_s_at	4450	1.311	0.2425	No
41	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	4569	1.285	0.2417	No
42	SLC38A1	1415903_at 1454764_s_at	4697	1.256	0.2403	No
43	FBXO5	1429499_at	4803	1.237	0.2400	No
44	SLC25A3	1416300_a_at 1440302_at	4871	1.225	0.2413	No
45	PKMYT1	1418481_at 1438601_at	4959	1.207	0.2416	No
46	STAG2	1421849_at 1450396_at	5019	1.195	0.2431	No
47	LHX5	1420348_at	5366	1.132	0.2313	No
48	MCM3	1420029_at 1426653_at	5651	1.081	0.2221	No
49	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	5677	1.077	0.2248	No
50	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	5706	1.071	0.2274	No
51	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	5901	1.042	0.2222	No
52	TFRC	1422966_a_at 1422967_a_at 1452661_at AFFX-TransRecMur/X57349_3_at AFFX-TransRecMur/X57349_5_at AFFX-TransRecMur/X57349_M_at	6032	1.021	0.2199	No
53	TRIM47	1426784_at	6192	0.999	0.2162	No
54	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	6208	0.997	0.2190	No
55	MEIS1	1440431_at 1443260_at 1445773_at 1450992_a_at 1459423_at 1459512_at	6317	0.979	0.2176	No
56	ORC1L	1422663_at 1443172_at	6487	0.954	0.2132	No
57	GRIK2	1425790_a_at 1439286_at 1440602_at 1445090_at 1457683_at	6526	0.949	0.2149	No
58	NDUFA11	1429708_at 1444154_at	6591	0.939	0.2153	No
59	LASP1	1438633_x_at 1438634_x_at 1439264_x_at 1444947_at 1448207_at 1455470_x_at 1456309_x_at 1456469_x_at 1456578_x_at 1460173_at	6972	0.881	0.2010	No
60	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	7006	0.874	0.2026	No
61	PAQR4	1423101_at	7051	0.867	0.2037	No
62	PLK4	1419838_s_at 1426580_at 1452115_a_at	7212	0.841	0.1994	No
63	APRIN	1435242_at 1436161_at 1441553_at	7221	0.839	0.2020	No
64	SEZ6	1420885_a_at 1427674_a_at 1459972_x_at	7780	0.757	0.1791	No
65	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	7813	0.751	0.1803	No
66	CDC45L	1416575_at 1457838_at	7844	0.747	0.1816	No
67	NOL4	1430189_at 1441447_at 1456387_at	7928	0.736	0.1804	No
68	GCH1	1420499_at 1429692_s_at	8234	0.688	0.1689	No
69	PCSK1	1421396_at	8238	0.687	0.1712	No
70	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	8303	0.677	0.1707	No
71	WEE1	1416773_at 1416774_at	8415	0.661	0.1680	No
72	PAPOLG	1427241_at 1446307_at	8637	0.628	0.1600	No
73	PELP1	1425042_s_at 1449973_a_at	8661	0.624	0.1612	No
74	ARHGAP11A	1438434_at	8723	0.616	0.1606	No
75	INSM1	1421399_at 1455865_at	9202	0.547	0.1406	No
76	STMN1	1415849_s_at	9253	0.538	0.1403	No
77	ASCL1	1437086_at 1450164_at	9864	0.453	0.1139	No
78	PIM1	1423006_at 1435458_at	9985	0.437	0.1099	No
79	TBX3	1437479_x_at 1439567_at 1444594_at 1445757_at 1448029_at	10487	0.369	0.0882	No
80	CACNA1G	1423365_at	10623	0.347	0.0833	No
81	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	10638	0.346	0.0839	No
82	MAT2A	1423667_at 1433576_at 1438386_x_at 1438630_x_at 1438976_x_at 1439386_x_at 1456702_x_at	10855	0.319	0.0751	No
83	PEG3	1417355_at 1417356_at 1433924_at 1447731_at 1447732_x_at	10892	0.314	0.0746	No
84	SSBP3	1425940_a_at 1427917_s_at 1439136_at 1443554_at 1457560_at 1458749_at	11044	0.295	0.0687	No
85	SLC6A4	1417150_at	11249	0.262	0.0603	No
86	SYT11	1429314_at 1429315_at 1429729_at 1436176_at 1449264_at 1455176_a_at	11410	0.239	0.0538	No
87	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	11503	0.226	0.0503	No
88	SALL1	1450489_at	11540	0.221	0.0495	No
89	MDGA1	1432062_at	11561	0.219	0.0493	No
90	AP4M1	1418846_at	11901	0.166	0.0344	No
91	IPO7	1442511_at 1454955_at 1458165_at	12118	0.133	0.0249	No
92	JPH1	1421520_at 1438428_at	12360	0.097	0.0142	No
93	ING3	1422805_a_at 1422806_x_at 1450760_a_at 1460082_at	12384	0.094	0.0135	No
94	KLF4	1417394_at 1417395_at	12475	0.081	0.0096	No
95	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	12482	0.079	0.0096	No
96	BAT3	1433890_a_at	12565	0.067	0.0061	No
97	ATE1	1420036_at 1420651_at 1420652_at 1435173_at 1446611_at 1449709_s_at	12626	0.059	0.0036	No
98	PODN	1435180_at	12634	0.058	0.0035	No
99	ATRX	1420945_at 1420946_at 1420947_at 1438750_at 1441014_at 1441771_at 1450051_at 1453734_at 1456832_at	12703	0.047	0.0005	No
100	DLST	1423710_at 1430161_at 1431011_at 1437775_at	12974	0.002	-0.0119	No
101	ADAMTS2	1435990_at 1455720_at 1457058_at	13373	-0.065	-0.0299	No
102	TREX2	1449367_at	13658	-0.115	-0.0426	No
103	RBBP4	1434892_x_at 1442443_at 1454791_a_at 1454875_a_at 1456260_at	13742	-0.133	-0.0459	No
104	HS6ST3	1421599_at	14034	-0.185	-0.0586	No
105	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	14231	-0.220	-0.0668	No
106	HMGN2	1433507_a_at	14597	-0.286	-0.0825	No
107	CLTA	1421062_s_at 1434540_a_at 1444328_at	14741	-0.316	-0.0880	No
108	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	15028	-0.374	-0.0998	No
109	CDC6	1417019_a_at	15043	-0.376	-0.0991	No
110	FMO4	1425799_at 1444852_at	15078	-0.381	-0.0993	No
111	MCM2	1434079_s_at 1448777_at	15310	-0.431	-0.1083	No
112	ZIM2	1432297_at	15323	-0.434	-0.1073	No
113	E2F1	1417878_at 1431875_a_at 1447840_x_at	15380	-0.452	-0.1083	No
114	PRKDC	1451576_at	15548	-0.496	-0.1142	No
115	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	15690	-0.533	-0.1188	No
116	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	15820	-0.560	-0.1227	No
117	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	16085	-0.625	-0.1326	No
118	ADCY8	1418754_at 1443704_at	16118	-0.635	-0.1318	No
119	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	16176	-0.649	-0.1320	No
120	ONECUT1	1421447_at 1450252_at 1456974_at	16240	-0.670	-0.1325	No
121	ATAD2	1436174_at 1443146_at 1443229_at	16401	-0.715	-0.1373	No
122	SIX5	1427560_at	16630	-0.787	-0.1450	No
123	KLF5	1430255_at 1451021_a_at 1451739_at	17024	-0.910	-0.1598	No
124	PIAS1	1422581_at 1446448_at 1455486_at 1455611_at	17082	-0.930	-0.1591	No
125	DNAJC5G	1437814_at	17277	-0.991	-0.1644	No
126	ARID4A	1436191_at 1438464_at 1456420_at	17387	-1.026	-0.1658	No
127	HNRPD	1425142_a_at 1446083_at	17398	-1.029	-0.1625	No
128	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	18076	-1.306	-0.1890	No
129	DDB2	1425706_a_at 1436680_s_at	18237	-1.379	-0.1914	No
130	PHF15	1430081_at 1455345_at	18295	-1.413	-0.1889	No
131	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	18427	-1.476	-0.1897	No
132	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	18437	-1.480	-0.1848	No
133	RHD	1417049_at	18543	-1.534	-0.1841	No
134	TMEM15	1424366_at	18665	-1.580	-0.1840	No
135	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	18680	-1.587	-0.1790	No
136	PPP1R8	1424554_at 1435821_s_at	18817	-1.679	-0.1792	No
137	CNOT3	1435965_at 1441465_at	18938	-1.751	-0.1785	No
138	CASP8AP2	1449217_at	18948	-1.755	-0.1726	No
139	CTCF	1418330_at 1449042_at	19005	-1.800	-0.1687	No
140	TBX6	1449868_at	19258	-1.984	-0.1732	No
141	FOXO3A	1434831_a_at 1434832_at 1439598_at 1444226_at 1450236_at 1458279_at	19419	-2.085	-0.1731	No
142	ZCCHC8	1423755_at 1441639_at	19661	-2.248	-0.1761	No
143	SLC25A14	1417154_at	20197	-2.795	-0.1907	No
144	MXD3	1422970_at 1438847_at 1448878_at	20338	-2.963	-0.1865	No
145	STK35	1431107_at 1439802_at	20364	-2.993	-0.1769	No
146	MAZ	1427099_at	20396	-3.020	-0.1676	No
147	AP1S2	1437998_at 1447903_x_at 1452657_at 1456252_x_at 1460036_at	20662	-3.392	-0.1676	No
148	FLI1	1422024_at 1433512_at 1441584_at	20689	-3.428	-0.1565	No
149	BARHL1	1418811_at 1418812_a_at	20852	-3.688	-0.1508	No
150	CTDSP1	1452055_at	20998	-3.921	-0.1434	No
151	H2AFZ	1441370_at	21157	-4.282	-0.1353	No
152	PHF13	1455175_at	21226	-4.461	-0.1225	No
153	PHF12	1434922_at 1453579_at	21235	-4.496	-0.1068	No
154	RAB11B	1423448_at	21282	-4.613	-0.0924	No
155	E2F7	1437187_at	21335	-4.748	-0.0778	No
156	DDX17	1437773_x_at 1439037_at 1452155_a_at	21573	-5.789	-0.0679	No
157	PPP1CC	1440594_at	21665	-6.293	-0.0496	No
158	DCK	1428838_a_at 1439012_a_at 1449176_a_at	21820	-8.499	-0.0263	No
159	ID3	1416630_at	21834	-8.786	0.0046	No