Details for gene set BRENTANI

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	BRENTANI_SIGNALING
Enrichment Score (ES)	-0.48890507
Normalized Enrichment Score (NES)	-1.9248174
Nominal p-value	0.0
FDR q-value	0.014822778
FWER p-Value	0.233

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	324	4.648	0.0004	No
2	AXIN1	1426966_at 1426967_at 1441029_at	1066	2.980	-0.0238	No
3	MAPK10	1437195_x_at 1448342_at 1458002_at 1458062_at 1458513_at	1309	2.715	-0.0260	No
4	TNFRSF10B	1421296_at 1422344_s_at	1347	2.685	-0.0188	No
5	ITGA9	1420860_at 1450029_s_at 1460285_at	1491	2.530	-0.0170	No
6	TANK	1421640_a_at 1441513_at 1459668_at	1645	2.397	-0.0162	No
7	RAP1A	1424139_at	1761	2.307	-0.0139	No
8	ITGA7	1418393_a_at	2407	1.949	-0.0371	No
9	NCK1	1421487_a_at 1424543_at 1447271_at	2432	1.934	-0.0318	No
10	MCC	1438081_at 1442741_at 1442892_at 1459524_at 1459752_at	2521	1.894	-0.0296	No
11	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	2923	1.744	-0.0423	No
12	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	3122	1.674	-0.0458	No
13	WNT1	1425377_at	3150	1.664	-0.0416	No
14	GRB14	1417673_at 1457526_at	3285	1.626	-0.0424	No
15	PTCH2	1422655_at	3386	1.593	-0.0417	No
16	ITGB5	1417533_a_at 1417534_at 1456133_x_at 1456195_x_at	3397	1.591	-0.0370	No
17	MAP3K12	1417115_at 1438908_at 1456565_s_at	3462	1.574	-0.0347	No
18	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	3707	1.501	-0.0410	No
19	IRS1	1423104_at	3910	1.444	-0.0455	No
20	MAPKAPK2	1426648_at	4175	1.378	-0.0531	No
21	ITGA5	1423267_s_at 1423268_at 1457561_at 1458996_at	4293	1.353	-0.0540	No
22	MAP3K7IP1	1426898_at 1447692_x_at	4411	1.323	-0.0550	No
23	IL10	1450330_at	4759	1.246	-0.0669	No
24	IFNB1	1422305_at	4823	1.233	-0.0657	No
25	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	5061	1.188	-0.0727	No
26	NF1	1438067_at 1441523_at 1443097_at 1452525_a_at	5114	1.180	-0.0712	No
27	CXCL2	1449984_at	5274	1.148	-0.0747	No
28	ITGA2	1450501_at	5607	1.088	-0.0863	No
29	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	5706	1.071	-0.0873	No
30	ERG	1425370_a_at 1440244_at	5783	1.060	-0.0873	No
31	MAP2K2	1415974_at 1443436_at 1460636_at	5916	1.039	-0.0900	No
32	MAPK13	1448871_at	5959	1.032	-0.0885	No
33	RAN	1443131_at 1446819_at 1447478_at 1460551_at	6151	1.002	-0.0940	No
34	IL13	1420802_at	6196	0.998	-0.0927	No
35	SHC1	1422853_at 1422854_at	6567	0.943	-0.1066	No
36	MAS1	1422936_at 1447026_at	6599	0.938	-0.1049	No
37	IFNG	1425947_at	6815	0.904	-0.1118	No
38	CALM1	1417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at	6826	0.902	-0.1093	No
39	IFNAR2	1427691_a_at 1440169_x_at 1451462_a_at	6895	0.892	-0.1095	No
40	INHA	1422728_at	6908	0.890	-0.1071	No
41	ITGA3	1421997_s_at 1455158_at 1460305_at	7115	0.857	-0.1137	No
42	HRAS	1422407_s_at 1424132_at	7380	0.815	-0.1232	No
43	JAG2	1426430_at 1426431_at	7384	0.814	-0.1206	No
44	JAK1	1433803_at 1433804_at 1433805_at	7449	0.803	-0.1209	No
45	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	8048	0.719	-0.1460	No
46	BTK	1422755_at	8127	0.705	-0.1473	No
47	MAPK12	1447823_x_at 1449283_a_at	8129	0.705	-0.1450	No
48	SFN	1448612_at	8206	0.692	-0.1462	No
49	ITGA1	1439713_at 1446569_at 1455251_at	8289	0.679	-0.1478	No
50	CXCL12	1417574_at 1439084_at 1448823_at	8426	0.660	-0.1518	No
51	ARHGEF16	1427386_at	8682	0.622	-0.1615	No
52	SKIL	1422054_a_at 1452214_at	9124	0.557	-0.1799	No
53	TNF	1419607_at	9533	0.499	-0.1970	No
54	TTK	1442594_at 1449171_at	9613	0.489	-0.1990	No
55	MAPK4	1435367_at	9647	0.483	-0.1990	No
56	AKAP13	1430445_at 1433722_at 1436933_at 1439254_at 1440392_at 1440977_at 1443923_at 1445311_at 1447663_at	10080	0.425	-0.2174	No
57	IGFBP3	1423062_at 1458268_s_at	10312	0.395	-0.2267	No
58	IL1B	1449399_a_at	10345	0.391	-0.2269	No
59	PTPRK	1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at	10545	0.361	-0.2349	No
60	IFNGR1	1443602_at 1448167_at	11070	0.292	-0.2580	No
61	ABL2	1445483_at 1447127_at	11308	0.253	-0.2680	No
62	ITGAM	1422046_at	11391	0.241	-0.2710	No
63	WNT4	1450782_at	11604	0.212	-0.2801	No
64	MAP2K5	1417854_at 1430180_at 1453712_a_at 1455941_s_at	11651	0.204	-0.2815	No
65	ATM	1421205_at 1428830_at	11727	0.193	-0.2843	No
66	YWHAE	1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at	11962	0.157	-0.2945	No
67	APC	1420956_at 1420957_at 1435543_at 1450056_at	12128	0.131	-0.3017	No
68	TNFSF4	1421744_at	12198	0.120	-0.3045	No
69	IGFBP1	1418918_at	12408	0.090	-0.3138	No
70	MAP2K3	1425456_a_at 1451714_a_at	12419	0.089	-0.3139	No
71	MYD88	1419272_at	12479	0.079	-0.3164	No
72	GRB7	1448227_at	12679	0.051	-0.3254	No
73	BCR	1427265_at 1452368_at 1455564_at	12826	0.029	-0.3320	No
74	JAG1	1421105_at 1421106_at 1434070_at	12920	0.013	-0.3362	No
75	IL15	1418219_at	12987	0.000	-0.3392	No
76	ITGAV	1421198_at 1432296_a_at 1432678_at 1432679_at 1452784_at	13224	-0.041	-0.3499	No
77	NOTCH4	1436901_at 1449146_at 1456263_at	13241	-0.044	-0.3505	No
78	ITGAX	1419128_at	13311	-0.055	-0.3535	No
79	VIPR1	1423004_at	13594	-0.102	-0.3661	No
80	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	13945	-0.167	-0.3817	No
81	NRAS	1422688_a_at 1454060_a_at	14223	-0.219	-0.3937	No
82	WNT5A	1436791_at 1448818_at 1456976_at	14467	-0.265	-0.4040	No
83	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	14530	-0.275	-0.4059	No
84	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	14734	-0.314	-0.4142	No
85	MAPKAPK5	1417016_at 1439828_at	15041	-0.376	-0.4270	No
86	FYN	1417558_at 1441647_at 1448765_at	15050	-0.377	-0.4262	No
87	ARHGEF12	1423902_s_at 1446965_at 1451159_at 1453853_a_at	15314	-0.431	-0.4368	No
88	TYRO3	1425248_a_at 1425249_a_at	15357	-0.445	-0.4373	No
89	AKT2	1421324_a_at 1424480_s_at 1455703_at	15664	-0.524	-0.4496	No
90	MUSK	1450511_at	15782	-0.551	-0.4532	No
91	CXCL1	1419209_at 1441855_x_at 1457644_s_at	15891	-0.575	-0.4562	No
92	ITGB1	1426918_at 1426919_at 1426920_x_at 1427771_x_at 1438119_at 1452545_a_at	15899	-0.576	-0.4547	No
93	ROS1	1425970_a_at	15902	-0.577	-0.4529	No
94	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	15936	-0.585	-0.4524	No
95	TRAF6	1421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at	15940	-0.585	-0.4507	No
96	WNT2	1449425_at	16013	-0.605	-0.4520	No
97	IL2RB	1417546_at 1448759_at 1459870_x_at	16022	-0.607	-0.4503	No
98	ROCK1	1423444_at 1423445_at 1441162_at 1446518_at 1450994_at 1460729_at	16058	-0.618	-0.4499	No
99	MAPK9	1421876_at 1421877_at 1421878_at	16335	-0.696	-0.4603	No
100	SUFU	1420848_at 1431713_at 1440004_at 1446489_at	16364	-0.706	-0.4593	No
101	ITGB8	1436223_at	16396	-0.713	-0.4583	No
102	MAP2K1	1416351_at	16403	-0.715	-0.4562	No
103	REL	1420710_at	16407	-0.716	-0.4540	No
104	ITGB4	1427387_a_at	16485	-0.741	-0.4551	No
105	TIAM1	1418057_at 1444373_at 1453887_a_at	16695	-0.808	-0.4621	No
106	PTEN	1422553_at 1441593_at 1444325_at 1450655_at 1454722_at 1455728_at 1457493_at	16734	-0.818	-0.4611	No
107	ZAP70	1422701_at 1439749_at 1440178_x_at	16831	-0.851	-0.4627	No
108	PDPK1	1415729_at 1416501_at 1459775_at 1459776_x_at	16862	-0.858	-0.4613	No
109	MPL	1421461_at 1451919_a_at	16877	-0.862	-0.4591	No
110	SRC	1423240_at 1450918_s_at	16997	-0.899	-0.4616	No
111	SOS1	1421884_at 1421885_at 1421886_at	17029	-0.911	-0.4600	No
112	SMO	1427048_at 1427049_s_at 1442215_at	17249	-0.982	-0.4668	No
113	JAK3	1425750_a_at 1446515_at	17349	-1.014	-0.4680	No
114	RGS16	1426037_a_at 1451452_a_at 1455265_a_at	17404	-1.031	-0.4671	No
115	MAP3K8	1419208_at	17444	-1.043	-0.4655	No
116	PIK3CG	1422707_at 1422708_at	17754	-1.177	-0.4758	No
117	DGKG	1419756_at 1431167_at 1449584_at	17873	-1.224	-0.4772	No
118	NOTCH3	1421964_at 1421965_s_at 1443300_at	17962	-1.262	-0.4770	No
119	MKNK1	1417630_at 1417631_at 1454119_at	18221	-1.375	-0.4844	Yes
120	TNFSF13	1445227_at	18246	-1.386	-0.4809	Yes
121	IL18R1	1421628_at	18315	-1.425	-0.4793	Yes
122	PTK2B	1434653_at 1442437_at 1442927_at	18431	-1.478	-0.4797	Yes
123	AXL	1423586_at 1438621_x_at	18607	-1.555	-0.4827	Yes
124	GNB1	1417432_a_at 1425908_at 1454696_at 1459442_at	18610	-1.556	-0.4776	Yes
125	IL12RB1	1418166_at	18761	-1.646	-0.4791	Yes
126	MAPK11	1421925_at 1421926_at	18775	-1.658	-0.4742	Yes
127	AXIN2	1421341_at 1436845_at	18820	-1.680	-0.4707	Yes
128	CAMK4	1421941_at 1426167_a_at 1439843_at 1442822_at 1452572_at	18892	-1.712	-0.4683	Yes
129	STAT6	1421708_a_at 1426353_at	18962	-1.762	-0.4657	Yes
130	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	18978	-1.781	-0.4605	Yes
131	ITGB3	1421511_at 1455257_at	19191	-1.928	-0.4639	Yes
132	TYK2	1417306_at	19261	-1.986	-0.4605	Yes
133	TRAF3	1418587_at 1444758_at 1449149_at	19295	-2.005	-0.4554	Yes
134	TNFRSF1B	1418099_at 1448951_at	19320	-2.022	-0.4498	Yes
135	ITGA4	1421194_at 1427615_at 1446350_at 1450155_at 1456498_at 1457376_at	19330	-2.030	-0.4436	Yes
136	MAP3K4	1421450_a_at 1447667_x_at 1450253_a_at 1459800_s_at	19373	-2.056	-0.4387	Yes
137	IQGAP2	1433885_at 1459894_at	19401	-2.070	-0.4331	Yes
138	MAPK7	1418060_a_at	19440	-2.094	-0.4280	Yes
139	RALBP1	1417248_at 1448634_at	19552	-2.164	-0.4259	Yes
140	PIK3C3	1425580_a_at	19610	-2.207	-0.4213	Yes
141	STAT5A	1421469_a_at 1450259_a_at	19715	-2.299	-0.4185	Yes
142	ARHGAP1	1424307_at 1451309_at	19996	-2.579	-0.4229	Yes
143	MAP3K14	1422999_at 1434364_at	20053	-2.632	-0.4167	Yes
144	ITGB7	1418741_at	20104	-2.701	-0.4101	Yes
145	DGKQ	1437000_at	20391	-3.015	-0.4133	Yes
146	MAP2K4	1426233_at 1442679_at 1451982_at	20425	-3.061	-0.4048	Yes
147	IRS2	1443969_at	20429	-3.064	-0.3948	Yes
148	ILK	1449942_a_at	20466	-3.107	-0.3862	Yes
149	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	20492	-3.141	-0.3770	Yes
150	STAT3	1424272_at 1426587_a_at 1459961_a_at 1460700_at	20682	-3.421	-0.3744	Yes
151	BIRC2	1418854_at	20809	-3.626	-0.3683	Yes
152	STAT1	1420915_at 1440481_at 1450033_a_at 1450034_at	20879	-3.726	-0.3591	Yes
153	MAP2K6	1426850_a_at 1459292_at	20947	-3.821	-0.3496	Yes
154	RELA	1419536_a_at	20962	-3.850	-0.3376	Yes
155	MAP2K7	1421416_at 1425393_a_at 1425512_at 1425513_at 1440442_at 1451736_a_at 1457182_at	20978	-3.880	-0.3255	Yes
156	DGKA	1418578_at	21145	-4.248	-0.3191	Yes
157	TRAF1	1423602_at 1445452_at	21192	-4.381	-0.3068	Yes
158	RAF1	1416078_s_at 1425419_a_at	21295	-4.634	-0.2962	Yes
159	ITGA6	1422444_at 1422445_at	21311	-4.680	-0.2814	Yes
160	ITGAE	1447541_s_at 1449216_at	21396	-4.942	-0.2690	Yes
161	STAT5B	1422102_a_at 1422103_a_at	21397	-4.949	-0.2527	Yes
162	MAP3K3	1426686_s_at 1426687_at 1436522_at	21412	-5.003	-0.2368	Yes
163	TNFRSF14	1452425_at	21415	-5.011	-0.2204	Yes
164	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	21585	-5.843	-0.2089	Yes
165	IL6ST	1421239_at 1437303_at 1452843_at 1460295_s_at	21633	-6.090	-0.1910	Yes
166	SH3BP2	1448328_at	21639	-6.137	-0.1710	Yes
167	VAV1	1422932_a_at	21678	-6.432	-0.1515	Yes
168	STAT2	1421911_at 1450403_at	21693	-6.619	-0.1304	Yes
169	ITGB2	1450678_at	21698	-6.716	-0.1084	Yes
170	RELB	1417856_at	21755	-7.349	-0.0867	Yes
171	TNFRSF4	1420351_at	21786	-7.955	-0.0619	Yes
172	TNFRSF1A	1417291_at	21853	-9.228	-0.0345	Yes
173	IFNAR1	1442222_at 1449026_at	21902	-11.581	0.0015	Yes