Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos |
| Phenotype | phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos |
| Upregulated in class | ATM_plus |
| GeneSet | RESPONSE_TO_HYPOXIA |
| Enrichment Score (ES) | -0.6021348 |
| Normalized Enrichment Score (NES) | -1.7208534 |
| Nominal p-value | 0.001953125 |
| FDR q-value | 0.20974144 |
| FWER p-Value | 0.969 |
| PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|---|
| 1 | EPAS1 | 1435436_at 1449888_at | 2093 | 1.675 | -0.0523 | No | ||
| 2 | SMAD3 | 1450471_at 1450472_s_at 1454960_at | 2317 | 1.556 | -0.0224 | No | ||
| 3 | TGFB2 | 1423250_a_at 1438303_at 1446141_at 1450922_a_at 1450923_at | 4609 | 1.009 | -0.1009 | No | ||
| 4 | PDIA2 | 1428952_at | 4784 | 0.991 | -0.0833 | No | ||
| 5 | MT3 | 1420575_at | 5455 | 0.902 | -0.0906 | No | ||
| 6 | CHRNA4 | 1421202_at 1421203_at 1456354_at | 6470 | 0.771 | -0.1170 | No | ||
| 7 | ARNT2 | 1420669_at 1420670_at 1434028_at 1446894_at | 7176 | 0.691 | -0.1313 | No | ||
| 8 | HIF1A | 1427418_a_at 1431981_at 1448183_a_at 1457231_at | 10123 | 0.390 | -0.2557 | No | ||
| 9 | CHRNA7 | 1440681_at 1450299_at | 10906 | 0.316 | -0.2832 | No | ||
| 10 | BNIP3 | 1422470_at | 11032 | 0.306 | -0.2811 | No | ||
| 11 | NARFL | 1450452_a_at | 13789 | 0.029 | -0.4061 | No | ||
| 12 | NF1 | 1438067_at 1441523_at 1443097_at 1452525_a_at | 14116 | -0.007 | -0.4208 | No | ||
| 13 | EGLN1 | 1423785_at 1443389_at 1451110_at | 14277 | -0.025 | -0.4274 | No | ||
| 14 | CLDN3 | 1426332_a_at 1434651_a_at 1451701_x_at 1453258_at 1460569_x_at | 14667 | -0.074 | -0.4433 | No | ||
| 15 | CD24 | 1416034_at 1437502_x_at 1448182_a_at | 16992 | -0.494 | -0.5366 | No | ||
| 16 | HSP90B1 | 1415889_a_at 1438040_a_at | 17107 | -0.524 | -0.5283 | No | ||
| 17 | PML | 1448757_at 1456103_at 1459137_at | 17575 | -0.667 | -0.5324 | No | ||
| 18 | EGLN2 | 1416533_at | 17714 | -0.704 | -0.5206 | No | ||
| 19 | CHRNB2 | 1420744_at 1436428_at 1441837_at | 18177 | -0.872 | -0.5192 | No | ||
| 20 | CXCR4 | 1448710_at | 19996 | -1.803 | -0.5556 | Yes | ||
| 21 | PLOD2 | 1416686_at 1416687_at | 20337 | -2.048 | -0.5183 | Yes | ||
| 22 | PLOD1 | 1416289_at 1445893_at | 20801 | -2.578 | -0.4729 | Yes | ||
| 23 | ALAS2 | 1451675_a_at | 21415 | -4.037 | -0.3967 | Yes | ||
| 24 | EP300 | 1434765_at | 21465 | -4.220 | -0.2901 | Yes | ||
| 25 | SMAD4 | 1422485_at 1422486_a_at 1422487_at 1444205_at | 21473 | -4.259 | -0.1805 | Yes | ||
| 26 | CREBBP | 1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at | 21885 | -7.815 | 0.0023 | Yes |
