Details for gene set GOLGI_APPARATUS

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	GOLGI_APPARATUS_PART
Enrichment Score (ES)	-0.4922362
Normalized Enrichment Score (NES)	-1.7253854
Nominal p-value	0.0
FDR q-value	0.22685574
FWER p-Value	0.962

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	AP1S1	1416087_at	1178	2.228	-0.0319	No
2	COPZ1	1447834_at 1451825_a_at	1377	2.072	-0.0204	No
3	GGA2	1428141_at 1457955_at	1720	1.890	-0.0174	No
4	GOLGB1	1433135_at 1435032_at 1460535_at	2501	1.473	-0.0385	No
5	SPG21	1451036_at	2850	1.352	-0.0411	No
6	LDLRAP1	1424378_at 1457162_at	2991	1.315	-0.0345	No
7	COG7	1443486_at	3621	1.161	-0.0518	No
8	CSPG5	1450713_at	3836	1.123	-0.0505	No
9	MAN1C1	1436193_at	4041	1.088	-0.0491	No
10	TRAPPC4	1415674_a_at 1429632_at	4635	1.006	-0.0663	No
11	ATP2C1	1431196_at 1434386_at 1437738_at 1439215_at 1442742_at	4819	0.987	-0.0649	No
12	AP4B1	1416631_at 1421726_at	4861	0.981	-0.0571	No
13	HS3ST1	1423450_a_at	5433	0.904	-0.0742	No
14	RAB30	1426452_a_at	5709	0.868	-0.0783	No
15	NBEA	1452251_at	6246	0.799	-0.0949	No
16	BET1	1416866_at 1416867_at	6266	0.797	-0.0879	No
17	ADAM10	1450104_at 1460083_at	6631	0.753	-0.0971	No
18	DOPEY1	1435295_at 1442855_at	6846	0.728	-0.0997	No
19	AP4M1	1418846_at	6908	0.721	-0.0953	No
20	TMED10	1424707_at 1424708_at	7202	0.688	-0.1019	No
21	ATP7B	1421563_at 1446004_at 1450283_at	7432	0.659	-0.1059	No
22	CLN3	1417551_at 1457789_at	7494	0.651	-0.1023	No
23	FIS1	1416764_at 1443819_x_at	7866	0.614	-0.1132	No
24	COPG	1415670_at 1416017_at	8228	0.577	-0.1240	No
25	TYR	1417717_a_at 1448821_at 1456095_at	8773	0.523	-0.1437	No
26	OCRL	1438284_at 1438396_at 1457313_at	10212	0.381	-0.2057	No
27	COPG2	1448761_a_at	10304	0.374	-0.2062	No
28	AP3B2	1426927_at 1445224_at 1451837_at	10801	0.325	-0.2257	No
29	BNIP3	1422470_at	11032	0.306	-0.2332	No
30	PAMCI	1427942_at	11728	0.236	-0.2627	No
31	GNAS	1421740_at 1427789_s_at 1443007_at 1443375_at 1444767_at 1450186_s_at 1453413_at	11745	0.234	-0.2611	No
32	DNM1L	1428008_at 1428086_at 1428087_at 1452638_s_at	12332	0.180	-0.2861	No
33	TAPBP	1421812_at 1450378_at	12460	0.167	-0.2903	No
34	COPE	1416384_a_at	13141	0.101	-0.3204	No
35	A2BP1	1418314_a_at 1438217_at 1447735_x_at 1455358_at 1456921_at	13219	0.092	-0.3230	No
36	COG2	1416932_at	13240	0.089	-0.3230	No
37	CAV1	1449145_a_at	13411	0.070	-0.3301	No
38	GOLGA4	1417674_s_at 1448803_at 1460213_at	13583	0.051	-0.3375	No
39	RAB14	1415686_at 1419243_at 1419244_a_at 1419245_at 1419246_s_at 1439687_at 1441992_at	13597	0.049	-0.3376	No
40	MALL	1425359_at 1435693_at	13642	0.045	-0.3391	No
41	CHST4	1453393_a_at	13739	0.035	-0.3432	No
42	COPA	1415706_at 1437274_at	14255	-0.023	-0.3665	No
43	CHST2	1422758_at 1460070_at	14688	-0.077	-0.3855	No
44	PCSK7	1417180_at	14789	-0.090	-0.3892	No
45	HOOK3	1443857_at 1446737_a_at	15612	-0.206	-0.4248	No
46	ARCN1	1423743_at 1436062_at 1444372_at 1451089_a_at	15658	-0.213	-0.4247	No
47	RER1	1460660_x_at 1460706_s_at	15748	-0.226	-0.4266	No
48	AP1GBP1	1435215_at 1442344_at 1457695_at	15891	-0.252	-0.4306	No
49	AP1G2	1419113_at	16047	-0.281	-0.4349	No
50	COG5	1435298_at 1445806_at	16126	-0.296	-0.4355	No
51	B3GALT6	1421155_at 1435252_at 1440340_at	16311	-0.331	-0.4407	No
52	GOLGA3	1419159_at 1419160_at 1449616_s_at	16495	-0.368	-0.4454	No
53	LARGE	1417435_at 1417436_at 1441642_at 1442420_at 1443212_at 1458663_at	16540	-0.379	-0.4437	No
54	TRIM23	1426969_at 1429998_at 1456089_at	16651	-0.406	-0.4447	No
55	COG8	1420265_x_at 1420266_at 1423617_at 1426821_at 1447860_x_at 1451052_at	17264	-0.571	-0.4671	No
56	ATXN2	1419866_s_at 1438143_s_at 1438144_x_at 1443516_at 1459363_at 1460653_at	17815	-0.742	-0.4849	Yes
57	FURIN	1418518_at	17890	-0.767	-0.4807	Yes
58	DOPEY2	1428330_at 1449904_at	17978	-0.795	-0.4768	Yes
59	COPB2	1452102_at 1456175_a_at	18158	-0.866	-0.4765	Yes
60	ENTPD4	1431761_at 1438177_x_at 1447900_x_at 1449190_a_at	18325	-0.920	-0.4750	Yes
61	COG4	1416993_at 1419808_at 1419809_s_at 1443135_at	18496	-0.979	-0.4731	Yes
62	RHOT1	1423533_a_at 1440853_at	18559	-0.996	-0.4660	Yes
63	B4GALT1	1418014_a_at 1458616_at 1458773_at	18567	-0.999	-0.4565	Yes
64	LMAN1	1428129_at 1428130_at 1444037_at 1452671_s_at	18660	-1.027	-0.4505	Yes
65	RAB11A	1449256_a_at	19189	-1.260	-0.4622	Yes
66	GOPC	1421191_s_at 1450153_at 1453221_at	19286	-1.311	-0.4537	Yes
67	ZFYVE1	1435071_at 1435072_at	19572	-1.487	-0.4520	Yes
68	COG1	1418354_at 1433774_x_at 1437844_x_at 1449053_s_at 1456740_x_at	19869	-1.697	-0.4488	Yes
69	STEAP2	1428636_at 1438773_at 1442359_at 1444290_at 1446071_at	20261	-2.005	-0.4469	Yes
70	RHOT2	1426822_at	20972	-2.853	-0.4511	Yes
71	GOLGA5	1418447_at	21062	-3.034	-0.4252	Yes
72	VAMP4	1422895_at 1422896_at 1434796_at	21079	-3.077	-0.3955	Yes
73	GGA3	1438008_at	21113	-3.151	-0.3659	Yes
74	COPB1	1423301_at	21116	-3.152	-0.3348	Yes
75	ARFIP1	1454916_s_at	21151	-3.228	-0.3045	Yes
76	GLG1	1417087_at 1448579_at 1448580_at 1460554_s_at	21232	-3.443	-0.2741	Yes
77	ATP7A	1418774_a_at 1436921_at	21244	-3.480	-0.2402	Yes
78	COG6	1426216_at	21296	-3.630	-0.2066	Yes
79	MAP4K2	1428297_at 1434833_at 1450244_a_at	21516	-4.429	-0.1729	Yes
80	COG3	1434654_at 1456286_at	21647	-5.435	-0.1251	Yes
81	ICA1	1417901_a_at 1431644_a_at	21751	-6.417	-0.0664	Yes
82	IGF2R	1424111_at 1424112_at 1440979_at 1445966_at 1457356_at	21846	-7.564	0.0041	Yes