Details for gene set V$TFIIA

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$TFIIA_Q6
Enrichment Score (ES)	-0.40002418
Normalized Enrichment Score (NES)	-1.577998
Nominal p-value	0.0
FDR q-value	0.11827831
FWER p-Value	0.692

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PPIL5	1427506_at 1436922_at 1452458_s_at	97	6.329	0.0196	No
2	INPPL1	1460394_a_at	163	5.184	0.0364	No
3	EMILIN1	1416414_at 1431834_a_at	357	3.862	0.0422	No
4	CS	1422577_at 1422578_at 1450667_a_at	390	3.745	0.0550	No
5	CDC25B	1421963_a_at	565	3.266	0.0595	No
6	ACACA	1444810_at	677	2.989	0.0657	No
7	CCND1	1417419_at 1417420_at 1448698_at	741	2.850	0.0737	No
8	ETHE1	1417203_at	873	2.643	0.0777	No
9	ACTR1B	1426403_at 1447292_at 1447293_x_at 1452057_at	935	2.538	0.0846	No
10	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	1113	2.307	0.0852	No
11	PLCB3	1448661_at	1212	2.197	0.0891	No
12	ATP2A2	1416551_at 1427250_at 1427251_at 1437797_at 1443551_at 1452363_a_at 1458927_at	1602	1.951	0.0786	No
13	ITGA1	1439713_at 1446569_at 1455251_at	1614	1.945	0.0855	No
14	GABARAPL2	1423187_at 1441376_at 1444956_at 1459477_at	1623	1.939	0.0926	No
15	JDP2	1424972_at 1450350_a_at	1672	1.917	0.0977	No
16	SMARCB1	1416045_a_at 1435856_x_at 1456938_at	1689	1.906	0.1042	No
17	IL10	1450330_at	1795	1.850	0.1064	No
18	LUC7L	1428255_at 1431181_a_at 1431664_at 1452708_a_at	2068	1.688	0.1003	No
19	PRPS1	1416052_at	2163	1.639	0.1022	No
20	GOLGB1	1433135_at 1435032_at 1460535_at	2501	1.473	0.0923	No
21	HYAL2	1448679_at	2528	1.462	0.0967	No
22	TFEB	1422566_at	2702	1.403	0.0941	No
23	PHPT1	1427903_at	2732	1.393	0.0981	No
24	PLAG1	1421745_at 1443943_at	2827	1.360	0.0989	No
25	BTBD3	1425660_at 1433868_at 1442748_at	3339	1.224	0.0801	No
26	EPHA1	1422917_at 1432399_a_at 1432400_at	3687	1.148	0.0685	No
27	COL16A1	1427986_a_at	3775	1.135	0.0688	No
28	LHX6	1422262_a_at 1425094_a_at	4327	1.043	0.0474	No
29	NEUROG3	1422312_a_at 1432034_at	4542	1.016	0.0415	No
30	HOXA9	1421579_at 1455626_at	4676	1.002	0.0392	No
31	MAPK10	1437195_x_at 1448342_at 1458002_at 1458062_at 1458513_at	4773	0.992	0.0385	No
32	DTX1	1425822_a_at 1458643_at	4820	0.987	0.0402	No
33	BCL7A	1428207_at 1428208_at 1451855_at 1459416_at	4874	0.981	0.0415	No
34	KCNJ10	1419601_at	5016	0.963	0.0387	No
35	POU3F3	1422331_at 1435197_at	5066	0.956	0.0400	No
36	ROCK2	1423592_at 1451041_at	5068	0.956	0.0436	No
37	STK35	1431107_at 1439802_at	5291	0.925	0.0370	No
38	NR2F1	1418157_at 1422412_x_at	5641	0.877	0.0242	No
39	HAPLN3	1431152_at	5701	0.869	0.0248	No
40	ETV6	1423401_at 1434880_at 1444598_at 1457944_at	5880	0.845	0.0199	No
41	FHL2	1419184_a_at	6035	0.828	0.0159	No
42	SLC39A5	1429523_a_at	6046	0.826	0.0186	No
43	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	6090	0.821	0.0198	No
44	FKBP8	1416113_at	6117	0.816	0.0217	No
45	ABCG4	1424437_s_at 1427732_s_at	6166	0.809	0.0226	No
46	MPP2	1449173_at	6209	0.803	0.0237	No
47	SOX3	1435192_at 1450485_at	6260	0.797	0.0244	No
48	TRIM28	1415869_a_at 1456308_x_at	6578	0.759	0.0127	No
49	UBXD3	1426007_a_at 1451906_at 1456385_x_at 1457581_at	6671	0.748	0.0114	No
50	ZIC2	1421301_at	6675	0.747	0.0141	No
51	H2AFZ	1441370_at	6710	0.743	0.0153	No
52	NLGN3	1456384_at	6895	0.722	0.0096	No
53	AP4M1	1418846_at	6908	0.721	0.0118	No
54	COL1A1	1423669_at 1455494_at	7298	0.676	-0.0035	No
55	MYH11	1418122_at 1448962_at	7383	0.665	-0.0048	No
56	TSC1	1422043_at 1439989_at 1455252_at	7601	0.641	-0.0124	No
57	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	7614	0.640	-0.0105	No
58	HSPB2	1429888_a_at	7725	0.628	-0.0132	No
59	HOXC5	1439885_at 1450832_at 1456301_at	7806	0.620	-0.0145	No
60	TUBB4	1423221_at	8083	0.591	-0.0249	No
61	SFRP1	1416594_at 1428136_at 1438620_x_at 1448395_at 1460187_at	8213	0.578	-0.0287	No
62	CRYAB	1416455_a_at 1434369_a_at 1435837_at	8224	0.578	-0.0269	No
63	CHRDL1	1421295_at 1424945_at 1434201_at 1456722_at	8233	0.577	-0.0251	No
64	HMG20B	1417637_a_at	8569	0.542	-0.0384	No
65	SIX1	1427277_at	8777	0.523	-0.0460	No
66	GSC	1421412_at	8813	0.519	-0.0456	No
67	GPC4	1421088_at 1436514_at 1443620_at	8870	0.514	-0.0462	No
68	BHLHB5	1418271_at	8973	0.502	-0.0490	No
69	NUP54	1432539_a_at 1433580_at 1438951_x_at 1447253_x_at 1459651_s_at	9139	0.486	-0.0547	No
70	GPC3	1443240_at 1446525_at 1450990_at	9237	0.477	-0.0574	No
71	SGCA	1422654_at	9295	0.472	-0.0582	No
72	CNN1	1417917_at	9453	0.456	-0.0637	No
73	HOXA2	1419602_at	9521	0.448	-0.0651	No
74	CKAP4	1426754_x_at 1426755_at 1452181_at 1455019_x_at	9835	0.418	-0.0779	No
75	MS4A1	1423226_at 1450912_at	9881	0.415	-0.0783	No
76	GPR19	1421756_a_at 1445480_at	9883	0.414	-0.0768	No
77	GAN	1439615_at	9998	0.401	-0.0805	No
78	NKIRAS2	1424416_at	10102	0.392	-0.0838	No
79	DDX5	1419653_a_at 1423645_a_at 1433809_at 1433810_x_at 1438371_x_at 1454793_x_at	10193	0.384	-0.0865	No
80	ALDH3A1	1418752_at	10267	0.377	-0.0884	No
81	KCNQ4	1435721_at 1442909_at	10352	0.369	-0.0908	No
82	LEPREL1	1436178_at 1444392_at	10396	0.366	-0.0914	No
83	PELO	1434071_a_at	10537	0.352	-0.0965	No
84	ABCA1	1421839_at 1421840_at 1450392_at	10652	0.341	-0.1005	No
85	LEP	1422582_at	10685	0.337	-0.1007	No
86	VAX1	1421774_at	10791	0.326	-0.1042	No
87	HOXD8	1431099_at 1433638_s_at	10792	0.326	-0.1030	No
88	DNAJC7	1448362_at 1459704_at	10900	0.316	-0.1067	No
89	ITGA3	1421997_s_at 1455158_at 1460305_at	11152	0.296	-0.1171	No
90	SRPK2	1417134_at 1417135_at 1417136_s_at 1431372_at 1435746_at 1440080_at 1442241_at 1442980_at 1447755_at 1448603_at	11407	0.269	-0.1278	No
91	SOX2	1416967_at	12142	0.197	-0.1608	No
92	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	12224	0.189	-0.1638	No
93	DLX3	1422037_at 1450475_at	12253	0.187	-0.1644	No
94	PPFIA2	1445766_at 1446218_at 1456856_at	12257	0.187	-0.1638	No
95	HAND2	1422221_at 1436041_at 1443854_at 1446812_at	12269	0.185	-0.1636	No
96	SAP130	1428857_at	12307	0.181	-0.1646	No
97	TRIB1	1424880_at 1424881_at	12443	0.169	-0.1702	No
98	FGF14	1435747_at 1447221_x_at 1447480_at 1449958_a_at 1458830_at 1459073_x_at	12501	0.164	-0.1722	No
99	CHRND	1420761_at	12570	0.157	-0.1747	No
100	IER5	1417612_at 1417613_at	12648	0.150	-0.1777	No
101	OTX1	1437601_at	12687	0.147	-0.1789	No
102	FRS3	1424449_at 1439277_at	12743	0.142	-0.1809	No
103	LAMA3	1444860_at	13029	0.113	-0.1935	No
104	MRVI1	1422245_a_at 1459665_s_at	13170	0.097	-0.1996	No
105	ADAMTS5	1422561_at 1450658_at 1456404_at	13174	0.097	-0.1994	No
106	RBBP4	1434892_x_at 1442443_at 1454791_a_at 1454875_a_at 1456260_at	13322	0.079	-0.2058	No
107	SNCAIP	1423499_at 1430463_a_at 1441037_at	13329	0.078	-0.2058	No
108	KTN1	1446702_at 1446749_at 1455434_a_at 1458502_at 1459429_at	13341	0.077	-0.2060	No
109	FOSB	1422134_at	13344	0.077	-0.2058	No
110	PLP1	1425467_a_at 1425468_at 1451718_at	13681	0.041	-0.2211	No
111	POU4F1	1429667_at 1429668_at	13756	0.033	-0.2244	No
112	MMP15	1422597_at 1437462_x_at 1439734_at	13827	0.024	-0.2275	No
113	ROD1	1424083_at 1424084_at 1441407_at 1455819_at	13921	0.016	-0.2317	No
114	DSCAM	1419293_at 1431801_at 1441082_at 1449411_at	14075	-0.001	-0.2388	No
115	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	14134	-0.009	-0.2414	No
116	IRX5	1421072_at	14265	-0.024	-0.2473	No
117	NFIB	1416293_at 1427680_a_at 1434101_at 1434102_at 1438072_at 1438244_at 1442214_at 1444800_at 1448288_at 1454834_at	14282	-0.026	-0.2479	No
118	PIGR	1450060_at	14596	-0.065	-0.2621	No
119	CDH3	1426673_at 1441255_at	14691	-0.078	-0.2661	No
120	ADD3	1423297_at 1423298_at 1426574_a_at 1447077_at 1456162_x_at	14968	-0.112	-0.2784	No
121	OSBPL6	1438717_a_at 1449627_at 1451831_at 1456495_s_at 1457881_at	14974	-0.112	-0.2782	No
122	SLC7A10	1421093_at	15072	-0.127	-0.2822	No
123	GPX2	1449279_at	15152	-0.137	-0.2853	No
124	CCKAR	1421195_at	15271	-0.154	-0.2901	No
125	SP8	1440519_at	15299	-0.159	-0.2907	No
126	KLC2	1418214_at 1431487_at	15346	-0.166	-0.2922	No
127	AXL	1423586_at 1438621_x_at	15488	-0.188	-0.2980	No
128	NEUROD6	1418047_at	15630	-0.209	-0.3037	No
129	GABRB2	1450319_at	15670	-0.214	-0.3047	No
130	YWHAZ	1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at	15688	-0.218	-0.3046	No
131	KDELR2	1417204_at 1417205_at	15872	-0.247	-0.3121	No
132	COL15A1	1448755_at	15988	-0.270	-0.3164	No
133	FGF17	1421523_at 1456239_at	16350	-0.338	-0.3317	No
134	EIF5	1415723_at 1433631_at 1454663_at 1454664_a_at 1456256_at	16415	-0.351	-0.3333	No
135	NCDN	1416852_a_at 1416853_at	16492	-0.368	-0.3354	No
136	HOXB1	1453501_at	16749	-0.432	-0.3455	No
137	LMNA	1421654_a_at 1425472_a_at 1426868_x_at 1452212_at 1457670_s_at	16812	-0.447	-0.3467	No
138	MMP20	1421706_at	16917	-0.472	-0.3496	No
139	ANXA3	1460330_at	16960	-0.487	-0.3497	No
140	ACTG2	1422340_a_at	17134	-0.529	-0.3557	No
141	CSPG4	1423341_at 1450944_at	17281	-0.574	-0.3602	No
142	MEIS1	1440431_at 1443260_at 1445773_at 1450992_a_at 1459423_at 1459512_at	17382	-0.603	-0.3625	No
143	PRDM16	1429308_at 1429309_at 1440745_at 1440870_at 1443251_at	17471	-0.630	-0.3641	No
144	SDCCAG3	1429554_at 1431760_a_at 1453195_at 1456106_x_at	17584	-0.670	-0.3667	No
145	SSH3	1447929_at	17643	-0.685	-0.3668	No
146	KLK7	1423542_at	17713	-0.704	-0.3673	No
147	PISD	1460585_x_at	17754	-0.717	-0.3664	No
148	NIN	1419078_at 1444155_at	17900	-0.771	-0.3701	No
149	UNC5C	1419592_at 1439174_at 1440698_at 1449522_at	17916	-0.774	-0.3679	No
150	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	18047	-0.827	-0.3707	No
151	JMJD1C	1426900_at 1439998_at 1441592_at 1448049_at 1458521_at	18083	-0.838	-0.3691	No
152	NR1D1	1421802_at 1426464_at	18085	-0.838	-0.3660	No
153	NRXN1	1428240_at 1433413_at 1439358_a_at 1439359_x_at 1442501_at 1447216_at 1454691_at 1460540_at	18253	-0.897	-0.3702	No
154	TRPC5	1422048_at 1442589_at 1459367_at	18309	-0.916	-0.3693	No
155	PHF12	1434922_at 1453579_at	18315	-0.918	-0.3660	No
156	DPF3	1441659_at 1442686_at 1450162_at	18332	-0.923	-0.3632	No
157	ANGPT1	1421441_at 1438936_s_at 1438937_x_at 1439066_at 1446656_at 1450717_at 1457381_at	18530	-0.991	-0.3685	No
158	CDIPT	1423657_at 1436715_s_at	18881	-1.112	-0.3804	No
159	CHD4	1436343_at 1438476_a_at 1451295_a_at	18887	-1.114	-0.3764	No
160	SLC9A9	1433719_at 1437488_at 1447149_at	19106	-1.217	-0.3818	No
161	TBCC	1424644_at 1451423_at	19504	-1.448	-0.3945	Yes
162	SRF	1418255_s_at 1418256_at	19580	-1.490	-0.3923	Yes
163	CNTN2	1435165_at 1435166_at 1450523_at 1456962_at	19662	-1.552	-0.3901	Yes
164	ITCH	1415769_at 1431316_at 1459332_at	19780	-1.631	-0.3893	Yes
165	CBX6	1424407_s_at 1429290_at	19821	-1.663	-0.3848	Yes
166	VASP	1451097_at	19992	-1.798	-0.3857	Yes
167	PABPN1	1415728_at 1422848_a_at 1422849_a_at 1422850_at	20119	-1.898	-0.3843	Yes
168	MCTS1	1425018_at	20224	-1.982	-0.3815	Yes
169	SMURF2	1429045_at 1429046_at 1454894_at	20282	-2.015	-0.3765	Yes
170	RNF38	1428101_at 1431993_a_at 1445272_at	20327	-2.043	-0.3707	Yes
171	PELI2	1419006_s_at 1436966_at 1437181_at	20442	-2.144	-0.3678	Yes
172	PTK2B	1434653_at 1442437_at 1442927_at	20564	-2.279	-0.3647	Yes
173	WDFY2	1434517_at	20586	-2.316	-0.3568	Yes
174	MAPKAPK3	1434815_a_at 1437494_at	20608	-2.335	-0.3489	Yes
175	TMEM24	1428095_a_at 1457585_at	20723	-2.481	-0.3447	Yes
176	TMEPAI	1422705_at	20834	-2.630	-0.3398	Yes
177	ELAVL1	1428653_x_at 1431037_a_at 1440373_at 1440464_at 1445521_at 1447109_at 1448151_at 1452858_at	20876	-2.702	-0.3313	Yes
178	RFX5	1423103_at	20991	-2.890	-0.3256	Yes
179	STAG2	1421849_at 1450396_at	21067	-3.048	-0.3174	Yes
180	IER2	1416442_at	21321	-3.698	-0.3150	Yes
181	PRG1	1417426_at	21371	-3.882	-0.3024	Yes
182	RNF44	1423532_at	21453	-4.182	-0.2902	Yes
183	EP300	1434765_at	21465	-4.220	-0.2747	Yes
184	ARNTL	1425099_a_at 1446544_at 1457740_at	21561	-4.763	-0.2609	Yes
185	EDEM1	1424065_at 1451218_at	21594	-5.067	-0.2431	Yes
186	FBXO11	1434108_at	21601	-5.118	-0.2239	Yes
187	CAPN3	1426043_a_at 1433681_x_at	21616	-5.239	-0.2046	Yes
188	VAMP2	1420833_at 1420834_at	21627	-5.314	-0.1848	Yes
189	TGFB1	1420653_at 1445360_at	21716	-6.029	-0.1659	Yes
190	NR4A1	1416505_at	21809	-7.139	-0.1429	Yes
191	ID3	1416630_at	21832	-7.406	-0.1157	Yes
192	BCL6	1421818_at 1450381_a_at	21833	-7.407	-0.0875	Yes
193	MYCT1	1426433_at 1438048_at 1447584_s_at 1452072_at	21887	-7.826	-0.0601	Yes
194	BIRC3	1421392_a_at 1425223_at	21905	-7.942	-0.0307	Yes
195	EGR1	1417065_at	21931	-8.413	0.0002	Yes