Details for gene set V$NFKB

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$NFKB_C
Enrichment Score (ES)	-0.39727858
Normalized Enrichment Score (NES)	-1.5825895
Nominal p-value	0.0
FDR q-value	0.12194209
FWER p-Value	0.677

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SYMPK	1428673_at	933	2.540	-0.0315	No
2	COL11A2	1423578_at	1056	2.381	-0.0264	No
3	GRIN2D	1421393_at	1635	1.935	-0.0442	No
4	NFKBIB	1421266_s_at 1446718_at	1654	1.924	-0.0364	No
5	UACA	1452985_at	1710	1.894	-0.0304	No
6	ARHGAP8	1451463_at	1789	1.851	-0.0256	No
7	TCEA2	1418107_at 1440791_x_at	1796	1.848	-0.0176	No
8	S100A10	1416762_at 1439348_at 1456642_x_at	1998	1.730	-0.0190	No
9	AGC1	1449827_at	2169	1.636	-0.0195	No
10	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	2336	1.549	-0.0202	No
11	TRIM47	1426784_at	2449	1.500	-0.0186	No
12	SMPD3	1422779_at 1438665_at 1445759_at 1450748_at	2457	1.497	-0.0121	No
13	CTGF	1416953_at	2468	1.493	-0.0059	No
14	PCBP4	1433658_x_at 1449054_a_at 1449055_x_at	2544	1.455	-0.0028	No
15	FOXD3	1422210_at	2547	1.454	0.0037	No
16	GNAO1	1421152_a_at 1448031_at 1460383_at	2782	1.378	-0.0009	No
17	HSD3B7	1416968_a_at 1442912_at	2912	1.335	-0.0008	No
18	SESN2	1425139_at 1451599_at	3015	1.308	0.0004	No
19	KCNQ5	1427426_at 1441071_at	3034	1.302	0.0055	No
20	FUT7	1420756_at	3127	1.274	0.0070	No
21	WNT10A	1460657_at	3238	1.245	0.0075	No
22	PHF6	1430415_at 1453761_at 1454625_at	3412	1.209	0.0050	No
23	CDC37	1416819_at 1416820_at	3698	1.148	-0.0029	No
24	SLC6A12	1449382_at	3751	1.140	-0.0002	No
25	FOXD2	1450289_at	3791	1.132	0.0031	No
26	GATA4	1418863_at 1418864_at 1441364_at	3811	1.128	0.0073	No
27	CDH5	1422047_at 1433956_at	4043	1.088	0.0016	No
28	ASCL3	1420780_at	4095	1.078	0.0041	No
29	DNAJA1	1416288_at 1437220_x_at 1445729_at 1459835_s_at 1460179_at	4203	1.061	0.0040	No
30	ALG6	1439007_at 1459337_at	4269	1.051	0.0057	No
31	IL18R1	1421628_at	4427	1.029	0.0031	No
32	JAK3	1425750_a_at 1446515_at	4514	1.019	0.0038	No
33	HCFC1	1421972_s_at 1433736_at 1445688_at 1446868_at 1450439_at 1457875_at	4546	1.016	0.0069	No
34	CLCN1	1427591_at 1448082_at	4703	1.000	0.0042	No
35	TRIB2	1426640_s_at 1426641_at 1459852_x_at	4714	0.999	0.0083	No
36	DDR1	1415797_at 1415798_at 1435820_x_at 1437619_x_at 1438367_x_at 1439382_x_at 1456226_x_at 1459990_at	5072	0.955	-0.0038	No
37	BAI2	1435558_at	5492	0.896	-0.0191	No
38	LCAT	1417043_at	5576	0.886	-0.0189	No
39	PTGES	1439747_at 1449449_at 1449450_at	5582	0.885	-0.0151	No
40	RALGDS	1460634_at	5603	0.882	-0.0121	No
41	SCRT2	1440930_a_at 1440931_at 1446986_at 1457310_x_at	5620	0.881	-0.0089	No
42	SNX15	1424337_at 1456649_at 1458021_at	5705	0.869	-0.0088	No
43	SEC14L2	1424530_at	5708	0.868	-0.0050	No
44	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	5786	0.857	-0.0047	No
45	ECT2	1419513_a_at	5840	0.850	-0.0033	No
46	VCAM1	1415989_at 1436003_at 1448162_at 1451314_a_at	5935	0.839	-0.0038	No
47	BCKDK	1443813_x_at 1460644_at	5937	0.838	-0.0001	No
48	HOXA11	1420414_at	6070	0.824	-0.0025	No
49	ANP32A	1421918_at 1434555_at 1450407_a_at	6185	0.806	-0.0041	No
50	BHLHB2	1418025_at	6240	0.800	-0.0029	No
51	SOX3	1435192_at 1450485_at	6260	0.797	-0.0002	No
52	TYRO3	1425248_a_at 1425249_a_at	6450	0.774	-0.0054	No
53	CENTB5	1439021_at	6584	0.758	-0.0081	No
54	PIGC	1424189_at 1424190_at	6780	0.737	-0.0138	No
55	RND1	1455197_at	7184	0.690	-0.0292	No
56	CCDC8	1444761_at	7486	0.653	-0.0401	No
57	VNN3	1420723_at	7532	0.649	-0.0393	No
58	OPCML	1435612_at 1442752_at 1457446_at 1458228_at	7754	0.625	-0.0466	No
59	EGF	1418093_a_at	8159	0.584	-0.0626	No
60	BLR1	1422003_at	8396	0.560	-0.0709	No
61	PURG	1424970_at 1452029_a_at	8475	0.552	-0.0720	No
62	C1QL1	1422777_at	8780	0.522	-0.0836	No
63	IL1RAPL1	1445821_at 1458964_at	8916	0.510	-0.0876	No
64	GNG4	1417943_at 1417944_at 1447669_s_at	9082	0.491	-0.0929	No
65	IL23A	1419529_at	9109	0.489	-0.0919	No
66	MAP3K13	1430137_at 1440749_at 1447699_at	9174	0.482	-0.0927	No
67	UBE2I	1422712_a_at 1422713_a_at 1425478_x_at 1453189_at	9217	0.478	-0.0925	No
68	LASP1	1438633_x_at 1438634_x_at 1439264_x_at 1444947_at 1448207_at 1455470_x_at 1456309_x_at 1456469_x_at 1456578_x_at 1460173_at	9267	0.475	-0.0926	No
69	SP6	1427786_at 1427787_at 1437788_at 1442342_at	9286	0.473	-0.0913	No
70	SLC34A3	1439519_at	9740	0.427	-0.1102	No
71	FOXA3	1431900_a_at	9950	0.406	-0.1180	No
72	AMOTL1	1428785_at 1431121_at 1446909_at 1455247_at	10023	0.399	-0.1195	No
73	IL13	1420802_at	10032	0.398	-0.1181	No
74	DCAMKL1	1423125_at 1424270_at 1424271_at 1436659_at 1446190_at 1450863_a_at 1451289_at 1451917_a_at	10270	0.377	-0.1273	No
75	GPHN	1426462_at 1426463_at 1430038_at 1444869_at 1445188_at 1458242_at	10290	0.375	-0.1265	No
76	LRRFIP2	1436378_at 1436510_a_at	10430	0.362	-0.1312	No
77	DUSP22	1441723_at 1448985_at	10451	0.360	-0.1305	No
78	TSLP	1450004_at	10778	0.327	-0.1441	No
79	IRF1	1448436_a_at	10804	0.325	-0.1438	No
80	TSNAXIP1	1427018_at	10877	0.318	-0.1456	No
81	SOX10	1424985_a_at 1425369_a_at 1451689_a_at	10944	0.312	-0.1473	No
82	LIN28	1437752_at	11191	0.292	-0.1573	No
83	IL2RA	1420691_at 1420692_at	11271	0.284	-0.1596	No
84	PAPPA	1427633_a_at 1432591_at 1432592_at 1459375_at	11291	0.282	-0.1592	No
85	SIX5	1427560_at	11297	0.281	-0.1582	No
86	RGL1	1418535_at 1440662_at 1449124_at	11326	0.278	-0.1582	No
87	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	11358	0.274	-0.1584	No
88	MAML2	1446570_at 1447546_s_at	11528	0.257	-0.1650	No
89	HOXB6	1451660_a_at	11540	0.256	-0.1644	No
90	EFNA3	1431170_at 1455344_at	11665	0.242	-0.1690	No
91	NLK	1419112_at 1435970_at 1443279_at 1445427_at 1456467_s_at	11670	0.242	-0.1681	No
92	HOXB9	1452317_at	11753	0.233	-0.1708	No
93	TAL1	1449389_at	12092	0.200	-0.1855	No
94	ICAM1	1424067_at	12150	0.196	-0.1872	No
95	GABPB2	1440289_at 1440868_at 1443942_at 1453682_at 1455110_at	12179	0.194	-0.1876	No
96	ZADH2	1451277_at	12229	0.189	-0.1890	No
97	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	12518	0.163	-0.2015	No
98	MAG	1460219_at	12566	0.158	-0.2030	No
99	IER5	1417612_at 1417613_at	12648	0.150	-0.2060	No
100	ID2	1422537_a_at 1435176_a_at 1453596_at	12717	0.145	-0.2085	No
101	IL1A	1421473_at	12916	0.125	-0.2171	No
102	ARHGAP5	1423194_at 1450896_at 1450897_at 1457410_at	12939	0.122	-0.2175	No
103	MSC	1418417_at	13374	0.073	-0.2372	No
104	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	13400	0.071	-0.2380	No
105	WRN	1425074_at 1425982_a_at 1450163_a_at	13429	0.067	-0.2390	No
106	CHX10	1419628_at	13525	0.057	-0.2431	No
107	ITGB8	1436223_at	13641	0.045	-0.2482	No
108	PLP1	1425467_a_at 1425468_at 1451718_at	13681	0.041	-0.2498	No
109	PCSK2	1428305_at 1444147_at 1447991_at 1447992_s_at 1448312_at	13840	0.023	-0.2569	No
110	TNFSF7	1449926_at	13994	0.008	-0.2640	No
111	CCL5	1418126_at	14078	-0.001	-0.2678	No
112	DDX17	1437773_x_at 1439037_at 1452155_a_at	14190	-0.015	-0.2728	No
113	NFKB2	1425902_a_at 1429128_x_at	14195	-0.015	-0.2729	No
114	PPP2R5E	1428461_at 1428462_at 1428463_a_at 1439401_x_at 1443533_at 1443949_at 1446356_at 1452788_at	14260	-0.023	-0.2758	No
115	MOBKL2C	1440919_at 1459919_a_at	14335	-0.031	-0.2790	No
116	PLA1A	1417785_at	14360	-0.034	-0.2800	No
117	BDNF	1422168_a_at 1422169_a_at	14499	-0.053	-0.2861	No
118	IFNB1	1422305_at	14651	-0.072	-0.2927	No
119	PTHLH	1422324_a_at 1427527_a_at	14715	-0.081	-0.2952	No
120	SNAP25	1416828_at 1443398_at	14921	-0.106	-0.3042	No
121	RIN2	1426368_at 1441209_at 1442829_at	15050	-0.124	-0.3095	No
122	GNA13	1422555_s_at 1422556_at 1430295_at 1433749_at 1446722_at 1450656_at 1453470_a_at 1460317_s_at	15162	-0.138	-0.3140	No
123	GRK5	1446361_at 1446998_at 1449514_at	15166	-0.138	-0.3135	No
124	FGF1	1423136_at 1441042_at 1450869_at	15345	-0.166	-0.3210	No
125	BCL2L1	1420887_a_at 1420888_at 1426050_at 1426191_a_at	15347	-0.166	-0.3203	No
126	GADD45B	1420197_at 1449773_s_at 1450971_at	15729	-0.221	-0.3368	No
127	ITGB4	1427387_a_at	15777	-0.230	-0.3379	No
128	FOXJ2	1420373_at 1420374_at	15899	-0.254	-0.3423	No
129	ENO3	1417951_at 1449631_at	16259	-0.322	-0.3574	No
130	RAD18	1423318_at 1435826_at 1443954_at 1451928_a_at	16315	-0.332	-0.3584	No
131	ARPC5	1444568_at 1448129_at	16329	-0.335	-0.3575	No
132	FGF17	1421523_at 1456239_at	16350	-0.338	-0.3569	No
133	CYLD	1429617_at 1429618_at 1445213_at	16421	-0.352	-0.3586	No
134	SMARCAD1	1435651_a_at 1440066_at 1452276_at	16610	-0.394	-0.3654	No
135	PPP1R13B	1434895_s_at 1442956_at 1459224_at	16622	-0.396	-0.3642	No
136	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	16815	-0.447	-0.3710	No
137	JPH3	1418161_at 1443724_at	16850	-0.457	-0.3705	No
138	MRPS6	1424440_at 1447585_s_at	16896	-0.469	-0.3704	No
139	LYPLA2	1417433_at	16929	-0.477	-0.3698	No
140	IL1RN	1423017_a_at 1425663_at 1451798_at	16987	-0.493	-0.3702	No
141	EDG5	1428176_at 1447880_x_at	17150	-0.532	-0.3752	No
142	NUP153	1441689_at 1441733_s_at 1452176_at	17190	-0.545	-0.3746	No
143	CXCL10	1418930_at	17296	-0.580	-0.3768	No
144	MSX1	1417127_at 1448601_s_at	17320	-0.585	-0.3752	No
145	RAP2C	1428119_a_at 1437016_x_at 1460430_at	17704	-0.701	-0.3897	No
146	PRKCD	1422847_a_at 1442256_at	17719	-0.705	-0.3871	No
147	RANBP10	1424584_a_at 1424585_at 1446446_at	17724	-0.707	-0.3841	No
148	CGGBP1	1454641_at 1455658_at	18011	-0.809	-0.3936	Yes
149	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	18047	-0.827	-0.3915	Yes
150	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	18054	-0.830	-0.3881	Yes
151	PTGS2	1417262_at 1417263_at	18090	-0.840	-0.3859	Yes
152	ASH1L	1420985_at 1441117_at 1450071_at 1450072_at	18108	-0.846	-0.3829	Yes
153	IL27RA	1449508_at	18313	-0.917	-0.3881	Yes
154	XPO6	1422759_a_at 1440492_at 1443737_at	18360	-0.931	-0.3860	Yes
155	TCTA	1420123_at 1420124_s_at 1420125_at 1424068_at	18453	-0.966	-0.3859	Yes
156	EHF	1419474_a_at 1419475_a_at 1447760_x_at 1451375_at	18594	-1.004	-0.3878	Yes
157	DAP3	1450848_at	18642	-1.022	-0.3854	Yes
158	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	18671	-1.030	-0.3820	Yes
159	LRCH1	1438032_at 1442502_at 1442757_at 1445396_at 1447746_at 1459150_at	18682	-1.033	-0.3778	Yes
160	SLAMF8	1425294_at	18692	-1.035	-0.3736	Yes
161	BMF	1422995_at 1454880_s_at 1458325_x_at	18712	-1.042	-0.3698	Yes
162	PFN1	1449018_at	18777	-1.069	-0.3679	Yes
163	BAHD1	1433703_s_at	18798	-1.079	-0.3640	Yes
164	CHD4	1436343_at 1438476_a_at 1451295_a_at	18887	-1.114	-0.3630	Yes
165	MAP3K8	1419208_at	18980	-1.164	-0.3620	Yes
166	LAMB3	1417812_a_at	18997	-1.168	-0.3574	Yes
167	USP52	1426700_a_at	19020	-1.177	-0.3532	Yes
168	RHOG	1422572_at	19084	-1.203	-0.3506	Yes
169	RHOA	1437628_s_at	19105	-1.217	-0.3461	Yes
170	CUEDC1	1425920_at 1435358_at 1443455_at 1451447_at	19156	-1.245	-0.3428	Yes
171	DACH2	1449823_at 1458012_at	19237	-1.286	-0.3406	Yes
172	UNC84B	1433832_at 1439238_at	19257	-1.296	-0.3357	Yes
173	MNT	1418192_at	19343	-1.345	-0.3335	Yes
174	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	19463	-1.418	-0.3326	Yes
175	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	19678	-1.558	-0.3354	Yes
176	SIRT2	1423507_a_at	19790	-1.641	-0.3331	Yes
177	EIF5A	1437859_x_at 1451470_s_at	19803	-1.648	-0.3263	Yes
178	STAT6	1421708_a_at 1426353_at	19854	-1.685	-0.3210	Yes
179	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	19917	-1.734	-0.3160	Yes
180	TAZ	1416207_at 1453785_at	20086	-1.871	-0.3153	Yes
181	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	20139	-1.923	-0.3090	Yes
182	IL4I1	1419192_at	20344	-2.050	-0.3092	Yes
183	FLI1	1422024_at 1433512_at 1441584_at	20634	-2.375	-0.3118	Yes
184	LTB	1419135_at	20678	-2.419	-0.3029	Yes
185	CCL22	1417925_at	20749	-2.506	-0.2948	Yes
186	NDRG2	1448154_at	20751	-2.507	-0.2835	Yes
187	EPHB6	1418051_at	20786	-2.557	-0.2736	Yes
188	ZHX2	1455210_at	21272	-3.557	-0.2799	Yes
189	FOS	1423100_at	21307	-3.658	-0.2650	Yes
190	SLC43A1	1440007_at 1453255_at	21326	-3.716	-0.2490	Yes
191	BCL3	1418133_at	21555	-4.716	-0.2383	Yes
192	TNIP1	1427689_a_at	21563	-4.786	-0.2170	Yes
193	SEMA3B	1416644_a_at 1431795_a_at 1448415_a_at	21575	-4.900	-0.1955	Yes
194	CD74	1425519_a_at	21581	-4.960	-0.1734	Yes
195	LCN2	1427747_a_at	21666	-5.583	-0.1521	Yes
196	RORC	1425792_a_at 1425793_a_at	21670	-5.593	-0.1270	Yes
197	SMOC1	1448321_at	21802	-7.073	-0.1012	Yes
198	RAB10	1422664_at 1429296_at 1442463_at 1453095_at	21823	-7.330	-0.0691	Yes
199	EGR2	1427682_a_at 1427683_at	21921	-8.208	-0.0365	Yes
200	EGR3	1421486_at 1436329_at	21923	-8.252	0.0006	Yes