Dataset | Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos |
Phenotype | phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos |
Upregulated in class | SCID |
GeneSet | V$MYCMAX_01 |
Enrichment Score (ES) | 0.3412355 |
Normalized Enrichment Score (NES) | 1.4227248 |
Nominal p-value | 0.005063291 |
FDR q-value | 0.12036157 |
FWER p-Value | 0.981 |
PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|---|
1 | EIF2C2 | 1426366_at 1438043_at | 8 | 8.396 | 0.0346 | Yes | ||
2 | HNRPA1 | 1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at | 26 | 7.887 | 0.0666 | Yes | ||
3 | TIMM10 | 1417499_at | 323 | 3.974 | 0.0696 | Yes | ||
4 | LAP3 | 1450860_at | 345 | 3.902 | 0.0849 | Yes | ||
5 | QTRT1 | 1450630_at | 396 | 3.736 | 0.0981 | Yes | ||
6 | NUDC | 1419471_a_at | 433 | 3.613 | 0.1115 | Yes | ||
7 | IFRD2 | 1451016_at | 472 | 3.521 | 0.1244 | Yes | ||
8 | PTGES2 | 1417591_at | 482 | 3.486 | 0.1385 | Yes | ||
9 | RANBP1 | 1422547_at | 490 | 3.453 | 0.1525 | Yes | ||
10 | ATAD3A | 1422461_at 1437343_x_at 1438178_x_at 1456541_x_at | 547 | 3.304 | 0.1637 | Yes | ||
11 | PUS1 | 1418869_a_at | 598 | 3.183 | 0.1747 | Yes | ||
12 | RCOR2 | 1417302_at | 627 | 3.122 | 0.1864 | Yes | ||
13 | HMGA1 | 1416184_s_at | 769 | 2.805 | 0.1916 | Yes | ||
14 | MTHFD1 | 1415916_a_at 1415917_at 1436704_x_at | 908 | 2.577 | 0.1960 | Yes | ||
15 | NOL5A | 1426533_at 1455035_s_at | 1067 | 2.361 | 0.1985 | Yes | ||
16 | BCL7C | 1440906_at 1443898_at 1446516_at 1447139_at 1449523_at | 1087 | 2.330 | 0.2074 | Yes | ||
17 | EEF1B2 | 1448252_a_at | 1111 | 2.308 | 0.2159 | Yes | ||
18 | HIRA | 1436241_s_at 1450049_a_at 1450050_at 1459103_at | 1200 | 2.206 | 0.2211 | Yes | ||
19 | NRIP3 | 1418104_at 1431597_a_at 1448954_at | 1223 | 2.192 | 0.2292 | Yes | ||
20 | KCMF1 | 1418694_at 1418695_a_at 1449180_at | 1226 | 2.191 | 0.2382 | Yes | ||
21 | RPS19 | 1449243_a_at 1460442_at | 1241 | 2.174 | 0.2466 | Yes | ||
22 | MRPL40 | 1448849_at | 1386 | 2.068 | 0.2486 | Yes | ||
23 | ACY1 | 1419173_at | 1510 | 1.999 | 0.2513 | Yes | ||
24 | G6PC3 | 1428245_at | 1526 | 1.991 | 0.2589 | Yes | ||
25 | ARL3 | 1450706_a_at | 1603 | 1.950 | 0.2635 | Yes | ||
26 | SDC1 | 1415943_at 1415944_at 1437279_x_at 1448158_at | 1664 | 1.918 | 0.2687 | Yes | ||
27 | USP15 | 1436891_at 1446186_at 1454036_a_at 1455842_x_at | 1693 | 1.905 | 0.2753 | Yes | ||
28 | KRTCAP2 | 1417058_a_at 1417059_at | 1758 | 1.870 | 0.2802 | Yes | ||
29 | NCL | 1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at | 1775 | 1.859 | 0.2872 | Yes | ||
30 | FOXO3A | 1434831_a_at 1434832_at 1439598_at 1444226_at 1450236_at 1458279_at | 1781 | 1.854 | 0.2947 | Yes | ||
31 | KCTD15 | 1435339_at | 1802 | 1.845 | 0.3014 | Yes | ||
32 | PPRC1 | 1426381_at | 1829 | 1.824 | 0.3078 | Yes | ||
33 | PPAT | 1428543_at 1441770_at 1452831_s_at | 1922 | 1.771 | 0.3110 | Yes | ||
34 | LYAR | 1417511_at | 1951 | 1.756 | 0.3170 | Yes | ||
35 | CSK | 1423518_at 1439744_at | 1984 | 1.736 | 0.3228 | Yes | ||
36 | CAD | 1440857_at 1452829_at 1452830_s_at | 2011 | 1.716 | 0.3287 | Yes | ||
37 | NPM1 | 1415839_a_at 1420267_at 1420268_x_at 1420269_at 1432416_a_at | 2077 | 1.682 | 0.3327 | Yes | ||
38 | PRPS1 | 1416052_at | 2163 | 1.639 | 0.3357 | Yes | ||
39 | PRDX4 | 1416166_a_at 1416167_at 1431269_at | 2359 | 1.541 | 0.3331 | Yes | ||
40 | DNAJB5 | 1421961_a_at 1421962_at 1450436_s_at | 2379 | 1.533 | 0.3386 | Yes | ||
41 | FOXD3 | 1422210_at | 2547 | 1.454 | 0.3370 | Yes | ||
42 | NTN2L | 1422056_at | 2945 | 1.326 | 0.3243 | Yes | ||
43 | TIMM9 | 1428010_at 1449886_a_at | 2988 | 1.315 | 0.3278 | Yes | ||
44 | KCNQ5 | 1427426_at 1441071_at | 3034 | 1.302 | 0.3312 | Yes | ||
45 | COL2A1 | 1450567_a_at | 3244 | 1.244 | 0.3267 | Yes | ||
46 | ZBTB10 | 1458695_at | 3386 | 1.213 | 0.3253 | Yes | ||
47 | IQGAP2 | 1433885_at 1459894_at | 3414 | 1.209 | 0.3291 | Yes | ||
48 | GPS1 | 1415699_a_at | 3434 | 1.204 | 0.3332 | Yes | ||
49 | FKBP11 | 1417267_s_at 1425839_at 1425938_a_at | 3586 | 1.169 | 0.3312 | Yes | ||
50 | SFXN2 | 1439966_x_at 1440786_x_at | 3614 | 1.163 | 0.3348 | Yes | ||
51 | RFX4 | 1432053_at 1436931_at 1443312_at | 3671 | 1.151 | 0.3370 | Yes | ||
52 | STMN1 | 1415849_s_at | 4037 | 1.088 | 0.3247 | Yes | ||
53 | DAZAP1 | 1419275_at | 4040 | 1.088 | 0.3292 | Yes | ||
54 | BOK | 1417040_a_at | 4051 | 1.087 | 0.3332 | Yes | ||
55 | GPRC5C | 1424450_at 1452947_at | 4056 | 1.086 | 0.3376 | Yes | ||
56 | PAICS | 1423564_a_at 1423565_at 1436298_x_at | 4075 | 1.082 | 0.3412 | Yes | ||
57 | RAB3IL1 | 1419991_at 1419992_x_at 1419993_at 1425133_s_at 1428391_at 1456442_at | 4220 | 1.059 | 0.3390 | No | ||
58 | CGREF1 | 1424528_at 1424529_s_at | 4356 | 1.039 | 0.3371 | No | ||
59 | TGFB2 | 1423250_a_at 1438303_at 1446141_at 1450922_a_at 1450923_at | 4609 | 1.009 | 0.3298 | No | ||
60 | CNNM1 | 1420354_at 1441312_at 1445979_at | 4728 | 0.998 | 0.3285 | No | ||
61 | ADAMTS19 | 1442459_at 1446513_at | 4933 | 0.974 | 0.3232 | No | ||
62 | FGF6 | 1427582_at | 4949 | 0.973 | 0.3265 | No | ||
63 | PITX3 | 1449917_at | 4951 | 0.972 | 0.3305 | No | ||
64 | NDUFS1 | 1425143_a_at 1453354_at | 5524 | 0.892 | 0.3079 | No | ||
65 | TFRC | 1422966_a_at 1422967_a_at 1452661_at AFFX-TransRecMur/X57349_3_at AFFX-TransRecMur/X57349_5_at AFFX-TransRecMur/X57349_M_at | 5551 | 0.889 | 0.3105 | No | ||
66 | SCRT2 | 1440930_a_at 1440931_at 1446986_at 1457310_x_at | 5620 | 0.881 | 0.3110 | No | ||
67 | IPO13 | 1433464_at | 5744 | 0.862 | 0.3089 | No | ||
68 | EFNB1 | 1418285_at 1418286_a_at 1451591_a_at | 5903 | 0.842 | 0.3052 | No | ||
69 | HTF9C | 1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at | 6042 | 0.827 | 0.3023 | No | ||
70 | HOXA11 | 1420414_at | 6070 | 0.824 | 0.3045 | No | ||
71 | HNRPDL | 1420093_s_at 1420094_at 1424251_a_at 1424252_at 1428224_at 1428225_s_at 1449039_a_at 1456698_s_at | 6283 | 0.795 | 0.2980 | No | ||
72 | EIF4E | 1450909_at 1457489_at 1459371_at | 6449 | 0.774 | 0.2937 | No | ||
73 | GIT1 | 1454759_at | 6493 | 0.768 | 0.2949 | No | ||
74 | BMP4 | 1422912_at | 6609 | 0.756 | 0.2927 | No | ||
75 | RTN4RL2 | 1439573_at | 6661 | 0.750 | 0.2935 | No | ||
76 | UBXD3 | 1426007_a_at 1451906_at 1456385_x_at 1457581_at | 6671 | 0.748 | 0.2962 | No | ||
77 | RHEBL1 | 1447818_x_at 1451516_at | 6930 | 0.718 | 0.2873 | No | ||
78 | SLC12A5 | 1425337_at 1445933_at 1451674_at | 7126 | 0.696 | 0.2813 | No | ||
79 | RCL1 | 1416730_at 1457992_at | 7340 | 0.669 | 0.2743 | No | ||
80 | CLN3 | 1417551_at 1457789_at | 7494 | 0.651 | 0.2699 | No | ||
81 | RUNX2 | 1424704_at 1425389_a_at 1426034_a_at | 7633 | 0.638 | 0.2663 | No | ||
82 | TCERG1 | 1421033_a_at 1434434_s_at 1450100_a_at | 8044 | 0.595 | 0.2499 | No | ||
83 | ILF3 | 1422546_at 1436802_at 1460669_at | 8047 | 0.595 | 0.2523 | No | ||
84 | APOA5 | 1417610_at | 8371 | 0.563 | 0.2398 | No | ||
85 | NEUROD1 | 1426412_at 1426413_at | 8489 | 0.550 | 0.2367 | No | ||
86 | SLC1A7 | 1456971_at | 8534 | 0.546 | 0.2369 | No | ||
87 | ETV4 | 1423232_at 1443381_at | 8726 | 0.527 | 0.2303 | No | ||
88 | SATB2 | 1425904_at 1427017_at | 8797 | 0.521 | 0.2293 | No | ||
89 | PCDHA10 | 1427687_at | 8884 | 0.513 | 0.2275 | No | ||
90 | TESK2 | 1426546_at | 8893 | 0.512 | 0.2292 | No | ||
91 | PPP1R9B | 1447247_at 1447486_at | 8970 | 0.503 | 0.2278 | No | ||
92 | RAI14 | 1417400_at 1417401_at 1441030_at 1444777_at | 9228 | 0.477 | 0.2180 | No | ||
93 | GPC3 | 1443240_at 1446525_at 1450990_at | 9237 | 0.477 | 0.2196 | No | ||
94 | ETV1 | 1422607_at 1445314_at 1450684_at | 9512 | 0.450 | 0.2089 | No | ||
95 | UBE2B | 1423106_at 1423107_at 1430177_at 1439477_at 1460132_at | 9611 | 0.439 | 0.2062 | No | ||
96 | LRP8 | 1421459_a_at 1440882_at 1442347_at | 9641 | 0.435 | 0.2067 | No | ||
97 | PA2G4 | 1420142_s_at 1423060_at 1435372_a_at 1450854_at 1460265_at | 9676 | 0.432 | 0.2069 | No | ||
98 | SLC6A15 | 1426712_at | 9773 | 0.424 | 0.2043 | No | ||
99 | PSME3 | 1418078_at 1418079_at 1438509_at | 9775 | 0.424 | 0.2060 | No | ||
100 | MAT2A | 1423667_at 1433576_at 1438386_x_at 1438630_x_at 1438976_x_at 1439386_x_at 1456702_x_at | 9994 | 0.401 | 0.1977 | No | ||
101 | POU3F2 | 1450831_at 1453478_at 1457734_at | 10016 | 0.399 | 0.1984 | No | ||
102 | OPRD1 | 1422121_at | 10103 | 0.392 | 0.1960 | No | ||
103 | ABCA1 | 1421839_at 1421840_at 1450392_at | 10652 | 0.341 | 0.1723 | No | ||
104 | SYT3 | 1417708_at | 10662 | 0.340 | 0.1733 | No | ||
105 | PPARGC1B | 1438775_at 1449945_at 1457578_at | 10843 | 0.321 | 0.1663 | No | ||
106 | RAMP2 | 1418187_at | 11041 | 0.305 | 0.1585 | No | ||
107 | LIN28 | 1437752_at | 11191 | 0.292 | 0.1529 | No | ||
108 | U2AF2 | 1417260_at | 11675 | 0.241 | 0.1317 | No | ||
109 | ZADH2 | 1451277_at | 12229 | 0.189 | 0.1071 | No | ||
110 | HSPBAP1 | 1428566_at 1428567_at 1441900_x_at 1442842_at | 12263 | 0.186 | 0.1063 | No | ||
111 | FLT3 | 1419538_at | 12427 | 0.170 | 0.0995 | No | ||
112 | TRIB1 | 1424880_at 1424881_at | 12443 | 0.169 | 0.0996 | No | ||
113 | FGF14 | 1435747_at 1447221_x_at 1447480_at 1449958_a_at 1458830_at 1459073_x_at | 12501 | 0.164 | 0.0976 | No | ||
114 | PTMA | 1423455_at | 12741 | 0.143 | 0.0872 | No | ||
115 | BCAS3 | 1423528_at 1428454_at 1457817_at 1458557_at | 12800 | 0.138 | 0.0851 | No | ||
116 | HOXB5 | 1418415_at | 12953 | 0.121 | 0.0786 | No | ||
117 | CHRM1 | 1439611_at 1450833_at | 12965 | 0.120 | 0.0786 | No | ||
118 | ELAVL3 | 1452524_a_at | 13023 | 0.113 | 0.0765 | No | ||
119 | NR6A1 | 1421515_at 1421516_at 1428825_at 1428826_at 1445872_at | 13153 | 0.100 | 0.0710 | No | ||
120 | CEBPA | 1418982_at | 13326 | 0.079 | 0.0634 | No | ||
121 | SNCAIP | 1423499_at 1430463_a_at 1441037_at | 13329 | 0.078 | 0.0636 | No | ||
122 | IPO7 | 1442511_at 1454955_at 1458165_at | 13657 | 0.044 | 0.0488 | No | ||
123 | KIAA0427 | 1427743_at 1436047_at | 13829 | 0.024 | 0.0410 | No | ||
124 | DAZL | 1419542_at 1449502_at | 13892 | 0.018 | 0.0383 | No | ||
125 | SYNCRIP | 1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at | 14134 | -0.009 | 0.0272 | No | ||
126 | HHIP | 1421426_at 1437933_at 1438083_at 1455277_at | 14366 | -0.035 | 0.0167 | No | ||
127 | TRIM46 | 1460568_at | 14623 | -0.069 | 0.0053 | No | ||
128 | MEOX2 | 1424233_at 1424234_s_at | 15138 | -0.135 | -0.0178 | No | ||
129 | ASXL1 | 1434561_at 1435077_at 1458380_at | 15139 | -0.135 | -0.0172 | No | ||
130 | TUBA4 | 1417373_a_at 1417374_at 1417375_at | 15151 | -0.137 | -0.0172 | No | ||
131 | SFRS14 | 1435798_a_at 1435799_at 1436005_at | 15650 | -0.213 | -0.0392 | No | ||
132 | ESRRA | 1442864_at 1460652_at | 16134 | -0.297 | -0.0602 | No | ||
133 | MPP3 | 1419077_at 1459611_at | 16190 | -0.308 | -0.0614 | No | ||
134 | ENO3 | 1417951_at 1449631_at | 16259 | -0.322 | -0.0632 | No | ||
135 | SNX5 | 1417646_a_at 1417647_at 1417648_s_at 1437074_at 1448791_at | 16312 | -0.331 | -0.0642 | No | ||
136 | USP34 | 1434392_at 1434393_at 1444437_at 1446112_at 1460126_at | 16370 | -0.343 | -0.0654 | No | ||
137 | CBX5 | 1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at | 16714 | -0.426 | -0.0794 | No | ||
138 | KCNN4 | 1421038_a_at 1435945_a_at | 16985 | -0.492 | -0.0898 | No | ||
139 | EWSR1 | 1417238_at 1425919_at 1436884_x_at 1441074_at 1456461_at | 17033 | -0.501 | -0.0898 | No | ||
140 | ATOH8 | 1426418_at | 17054 | -0.508 | -0.0886 | No | ||
141 | HOXA3 | 1427433_s_at 1441070_at 1452421_at | 17068 | -0.512 | -0.0871 | No | ||
142 | FKBP10 | 1415951_at 1449632_s_at | 17091 | -0.519 | -0.0860 | No | ||
143 | RPS6KA5 | 1431050_at 1437625_at 1439004_at 1440343_at | 17099 | -0.522 | -0.0841 | No | ||
144 | GJA1 | 1415800_at 1415801_at 1437992_x_at 1438650_x_at 1438945_x_at 1438973_x_at | 17261 | -0.570 | -0.0891 | No | ||
145 | IVNS1ABP | 1420961_a_at 1425718_a_at 1450084_s_at | 17445 | -0.621 | -0.0950 | No | ||
146 | QTRTD1 | 1421320_a_at 1451199_at | 17490 | -0.637 | -0.0943 | No | ||
147 | PABPC1 | 1418883_a_at 1419500_at 1453840_at | 17530 | -0.654 | -0.0934 | No | ||
148 | UBE1 | 1442767_s_at 1448116_at | 17557 | -0.662 | -0.0918 | No | ||
149 | DIABLO | 1417683_at 1425768_at | 17822 | -0.743 | -0.1009 | No | ||
150 | OPRS1 | 1416750_at 1435579_at 1440792_x_at 1451956_a_at 1457324_at | 17882 | -0.765 | -0.1004 | No | ||
151 | LZTS2 | 1426409_at | 17897 | -0.770 | -0.0978 | No | ||
152 | CDC14A | 1436913_at 1443184_at 1446493_at 1459517_at | 18047 | -0.827 | -0.1013 | No | ||
153 | ATF7IP | 1446323_at 1449192_at 1454973_at 1459096_at | 18107 | -0.846 | -0.1004 | No | ||
154 | NRAS | 1422688_a_at 1454060_a_at | 18126 | -0.853 | -0.0977 | No | ||
155 | MYCL1 | 1422087_at 1422088_at 1434777_at | 18223 | -0.888 | -0.0984 | No | ||
156 | STXBP2 | 1416449_x_at 1437048_x_at 1448341_a_at | 18595 | -1.004 | -0.1113 | No | ||
157 | PFN1 | 1449018_at | 18777 | -1.069 | -0.1152 | No | ||
158 | CRMP1 | 1448289_at | 18864 | -1.105 | -0.1145 | No | ||
159 | CHD4 | 1436343_at 1438476_a_at 1451295_a_at | 18887 | -1.114 | -0.1109 | No | ||
160 | BTBD5 | 1428721_at 1453987_at | 19078 | -1.200 | -0.1147 | No | ||
161 | POGK | 1447864_s_at 1459896_at | 19099 | -1.213 | -0.1105 | No | ||
162 | SMAD2 | 1420634_a_at 1458304_at | 19111 | -1.219 | -0.1060 | No | ||
163 | FOXJ3 | 1435362_at 1438220_at 1459055_at | 19123 | -1.229 | -0.1013 | No | ||
164 | GADD45G | 1453851_a_at | 19149 | -1.239 | -0.0973 | No | ||
165 | GPM6B | 1423091_a_at 1425942_a_at 1453514_at | 19201 | -1.263 | -0.0944 | No | ||
166 | PER1 | 1449851_at | 19247 | -1.290 | -0.0911 | No | ||
167 | MNT | 1418192_at | 19343 | -1.345 | -0.0899 | No | ||
168 | MXD4 | 1422574_at 1434378_a_at 1434379_at | 19366 | -1.356 | -0.0853 | No | ||
169 | H3F3A | 1423263_at 1442087_at | 19390 | -1.370 | -0.0806 | No | ||
170 | WDR23 | 1448418_s_at 1460189_at | 19537 | -1.472 | -0.0812 | No | ||
171 | AMPD2 | 1426757_at 1438941_x_at | 19726 | -1.588 | -0.0832 | No | ||
172 | SRP72 | 1428876_at 1428877_at | 19909 | -1.728 | -0.0844 | No | ||
173 | TOP1 | 1423474_at 1438495_at 1457573_at 1459672_at | 19917 | -1.734 | -0.0775 | No | ||
174 | ARMET | 1428112_at 1459455_at | 20058 | -1.854 | -0.0762 | No | ||
175 | SUCLG2 | 1427441_a_at 1435841_s_at 1444309_at | 20100 | -1.886 | -0.0703 | No | ||
176 | TCOF1 | 1423600_a_at 1423601_s_at 1424643_at | 20398 | -2.099 | -0.0752 | No | ||
177 | RFX5 | 1423103_at | 20991 | -2.890 | -0.0904 | No | ||
178 | ZHX2 | 1455210_at | 21272 | -3.557 | -0.0884 | No | ||
179 | SLC43A1 | 1440007_at 1453255_at | 21326 | -3.716 | -0.0754 | No | ||
180 | ISGF3G | 1421322_a_at | 21500 | -4.365 | -0.0652 | No | ||
181 | DIRC2 | 1454654_at 1457245_at | 21558 | -4.753 | -0.0480 | No | ||
182 | JMJD1A | 1426810_at | 21588 | -5.017 | -0.0284 | No | ||
183 | TUBA1 | 1418884_x_at | 21593 | -5.061 | -0.0076 | No | ||
184 | RORC | 1425792_a_at 1425793_a_at | 21670 | -5.593 | 0.0122 | No |