Details for gene set V$E4F1

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$E4F1_Q6
Enrichment Score (ES)	-0.3995053
Normalized Enrichment Score (NES)	-1.5904586
Nominal p-value	0.0
FDR q-value	0.119396046
FWER p-Value	0.633

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RAB1A	1416082_at 1448210_at 1457537_at	67	7.175	0.0238	No
2	POLR2A	1422311_a_at 1426242_at 1458710_at	154	5.273	0.0397	No
3	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	292	4.160	0.0490	No
4	MAP1LC3A	1447883_x_at 1451290_at	360	3.857	0.0603	No
5	MORF4L2	1415778_at 1439413_x_at	813	2.737	0.0498	No
6	CRY2	1426383_at	863	2.657	0.0575	No
7	ALS2CR13	1434010_at 1444629_at 1446891_at	897	2.598	0.0658	No
8	MRPL49	1423218_a_at 1423219_a_at	921	2.552	0.0743	No
9	RBBP8	1427061_at 1427062_at 1446097_at	1039	2.403	0.0779	No
10	EIF4A1	1427058_at 1430980_a_at 1434985_a_at	1288	2.138	0.0745	No
11	ELOVL5	1415840_at 1437211_x_at 1459242_at	1419	2.044	0.0762	No
12	DHX36	1424397_at 1424398_at 1437550_at	1503	2.001	0.0799	No
13	ATP2A2	1416551_at 1427250_at 1427251_at 1437797_at 1443551_at 1452363_a_at 1458927_at	1602	1.951	0.0827	No
14	FZD7	1450043_at 1450044_at	1624	1.938	0.0890	No
15	SLC20A2	1434235_at 1451768_a_at 1457302_at	1815	1.838	0.0871	No
16	SSTR2	1422256_at	1915	1.775	0.0893	No
17	UFC1	1416327_at	1925	1.770	0.0955	No
18	EPC1	1418850_at 1429914_at 1440198_at 1440742_at 1442279_at 1443675_at 1458315_at	2019	1.711	0.0976	No
19	NDUFB2	1416834_x_at 1442658_at 1448483_a_at 1453806_at	2308	1.563	0.0902	No
20	FOXD3	1422210_at	2547	1.454	0.0847	No
21	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	2701	1.403	0.0830	No
22	GPR3	1460275_at	2817	1.365	0.0828	No
23	GRK6	1437436_s_at 1450480_a_at 1451672_at	3138	1.270	0.0728	No
24	WBP5	1451230_a_at	3191	1.256	0.0752	No
25	GRM3	1430136_at	3201	1.254	0.0794	No
26	WNT10A	1460657_at	3238	1.245	0.0825	No
27	SLC36A3	1440102_at	3456	1.199	0.0770	No
28	MRC2	1421044_at 1421045_at 1446466_at	3460	1.198	0.0813	No
29	SCAMP5	1450247_a_at 1451224_at	3461	1.197	0.0858	No
30	ZBTB4	1429722_at 1460488_at	3591	1.168	0.0843	No
31	ID1	1425895_a_at	3846	1.120	0.0768	No
32	SLC25A25	1424735_at 1447856_x_at 1454284_at	3850	1.120	0.0808	No
33	CYR61	1416039_x_at 1417848_at 1417849_at 1438133_a_at 1442340_x_at 1457823_at 1459462_at	3931	1.109	0.0813	No
34	TRPC1	1421095_a_at 1421096_at	4066	1.084	0.0792	No
35	RAB2	1418621_at 1418622_at 1418623_at 1419945_s_at 1419946_s_at 1436477_x_at 1449676_at	4272	1.050	0.0737	No
36	ZNF462	1439106_at 1456789_at	4274	1.050	0.0776	No
37	EHD4	1449852_a_at	4436	1.027	0.0741	No
38	RUSC1	1431137_at 1434743_x_at 1436014_a_at 1437991_x_at 1438017_at	4452	1.026	0.0772	No
39	FLRT3	1429310_at 1453102_at	4695	1.001	0.0699	No
40	HMGB1	1416176_at 1425048_a_at 1435324_x_at	4761	0.994	0.0706	No
41	CALM2	1422414_a_at 1423807_a_at	4810	0.988	0.0721	No
42	ERF	1422114_at 1435561_at	5026	0.962	0.0658	No
43	PPM2C	1434228_at 1438201_at	5054	0.959	0.0682	No
44	UBAP1	1423185_a_at 1444624_at 1450893_a_at	5071	0.956	0.0710	No
45	ALDOC	1424714_at 1451461_a_at	5154	0.944	0.0708	No
46	PTOV1	1416945_at 1438058_s_at 1458357_x_at	5272	0.929	0.0689	No
47	TNFAIP8	1416950_at 1442239_at 1442753_at 1444224_at 1457996_at	5377	0.911	0.0675	No
48	RPL41	1422623_x_at 1455578_x_at	5402	0.908	0.0698	No
49	MAF	1435828_at 1437473_at 1444073_at 1447849_s_at 1447945_at 1456060_at	5452	0.902	0.0710	No
50	LENG9	1440190_at 1440191_s_at 1455497_at	5460	0.901	0.0740	No
51	KIRREL3	1431402_at 1441357_at 1452728_at	5653	0.876	0.0685	No
52	SHC3	1450326_at	5841	0.850	0.0631	No
53	TBX20	1422219_a_at 1425158_at 1453351_at	5927	0.840	0.0623	No
54	SOX9	1424950_at 1433889_at 1451538_at	6144	0.812	0.0554	No
55	SCG2	1450708_at	6330	0.789	0.0499	No
56	ETF1	1420023_at 1420024_s_at 1424013_at 1440629_at 1451208_at	6458	0.773	0.0469	No
57	TSPYL5	1455807_at	6743	0.740	0.0366	No
58	HOXB3	1427605_at 1456229_at	7044	0.706	0.0255	No
59	ADAMTS3	1441693_at 1458143_at	7080	0.701	0.0265	No
60	KCNA6	1421568_at 1441049_at 1456954_at	7455	0.656	0.0117	No
61	KDELR3	1418538_at	7910	0.609	-0.0068	No
62	IRX6	1427383_at	7918	0.609	-0.0049	No
63	CX36	1423019_at 1435297_at	7924	0.608	-0.0028	No
64	DDX51	1428728_at	8133	0.586	-0.0102	No
65	SATB2	1425904_at 1427017_at	8797	0.521	-0.0388	No
66	CBX3	1432628_at 1454305_at	8818	0.519	-0.0377	No
67	GNG4	1417943_at 1417944_at 1447669_s_at	9082	0.491	-0.0480	No
68	RFX1	1422109_at 1436059_at	9123	0.487	-0.0480	No
69	MAP3K13	1430137_at 1440749_at 1447699_at	9174	0.482	-0.0485	No
70	MASTL	1423524_at 1423525_at 1444725_at 1447136_at	9207	0.479	-0.0482	No
71	ARG2	1418847_at 1438841_s_at	9509	0.450	-0.0603	No
72	PAFAH1B1	1417086_at 1427703_at 1439656_at 1441404_at 1444125_at 1448578_at 1456947_at 1460199_a_at	9732	0.427	-0.0689	No
73	PPARGC1A	1434099_at 1434100_x_at 1437751_at 1456395_at 1460336_at	9733	0.427	-0.0673	No
74	PURB	1419640_at 1419641_at 1419642_at 1428254_at 1436940_at	9760	0.425	-0.0669	No
75	PSME3	1418078_at 1418079_at 1438509_at	9775	0.424	-0.0660	No
76	PITX2	1424797_a_at 1450482_a_at	9912	0.411	-0.0707	No
77	SNF1LK	1419766_at 1459601_at	10479	0.357	-0.0954	No
78	HIST1H4H	1428014_at 1431333_at	10550	0.351	-0.0973	No
79	PDLIM3	1443299_at 1449178_at	10580	0.347	-0.0973	No
80	DNM3	1425403_at 1436624_at 1436875_at 1438801_at 1445540_at 1446265_at 1446431_at 1446694_at 1457405_at	10591	0.346	-0.0965	No
81	FOXA1	1418496_at	10620	0.344	-0.0965	No
82	NAP1L2	1418046_at	10824	0.323	-0.1046	No
83	HS6ST2	1420938_at 1420939_at 1446257_at 1450047_at	11019	0.307	-0.1124	No
84	HIC2	1427581_at 1437571_at 1454944_at	11092	0.301	-0.1146	No
85	PPP2R2B	1426621_a_at	11190	0.293	-0.1179	No
86	NEK1	1434267_at 1438592_at 1453612_at 1458211_at	11441	0.266	-0.1284	No
87	NR3C1	1421866_at 1421867_at 1453860_s_at 1457635_s_at 1460303_at	11557	0.254	-0.1328	No
88	GTF2A1	1421357_at	11616	0.248	-0.1345	No
89	SYNGR3	1416098_at 1448216_at	11654	0.244	-0.1353	No
90	GNAS	1421740_at 1427789_s_at 1443007_at 1443375_at 1444767_at 1450186_s_at 1453413_at	11745	0.234	-0.1386	No
91	OSR1	1449350_at	11959	0.212	-0.1476	No
92	PTP4A1	1419024_at 1455002_at	11989	0.209	-0.1481	No
93	C1QTNF7	1429030_at 1460163_at	12147	0.196	-0.1546	No
94	PNMA3	1456829_at	12155	0.196	-0.1542	No
95	HOXC10	1439798_at	12216	0.190	-0.1562	No
96	ZADH2	1451277_at	12229	0.189	-0.1561	No
97	SLC31A1	1433750_at 1455285_at	12316	0.181	-0.1594	No
98	EGR4	1449977_at	12420	0.171	-0.1635	No
99	TRIB1	1424880_at 1424881_at	12443	0.169	-0.1638	No
100	FGF14	1435747_at 1447221_x_at 1447480_at 1449958_a_at 1458830_at 1459073_x_at	12501	0.164	-0.1658	No
101	KCNA2	1422197_at	12729	0.144	-0.1757	No
102	PTMA	1423455_at	12741	0.143	-0.1757	No
103	FBXL11	1435329_at 1443336_at 1444358_at 1455942_at 1458449_at	13097	0.106	-0.1916	No
104	NR6A1	1421515_at 1421516_at 1428825_at 1428826_at 1445872_at	13153	0.100	-0.1938	No
105	CHGB	1415885_at	13199	0.094	-0.1955	No
106	NKX2-2	1421112_at	13312	0.080	-0.2004	No
107	FOSB	1422134_at	13344	0.077	-0.2015	No
108	CLDN7	1448393_at	13708	0.038	-0.2181	No
109	FSTL5	1436800_at 1439904_at	13795	0.028	-0.2219	No
110	MYST1	1432080_s_at	13831	0.024	-0.2234	No
111	NUMBL	1416491_at	14038	0.003	-0.2329	No
112	FKBP7	1416803_at 1446078_at	14131	-0.008	-0.2371	No
113	NOL4	1430189_at 1441447_at 1456387_at	14509	-0.055	-0.2542	No
114	RHOBTB1	1429206_at 1429656_at	14528	-0.057	-0.2548	No
115	CLDN3	1426332_a_at 1434651_a_at 1451701_x_at 1453258_at 1460569_x_at	14667	-0.074	-0.2609	No
116	PRR3	1424145_at	14695	-0.078	-0.2619	No
117	GRIN2B	1422223_at 1431700_at	14788	-0.090	-0.2658	No
118	FGF9	1420795_at 1438718_at 1445258_at	15056	-0.126	-0.2776	No
119	MAP1A	1460566_at	15363	-0.168	-0.2910	No
120	LTBP1	1419786_at 1440678_at 1446232_at 1447547_at 1448870_at 1457852_at 1458739_at	15406	-0.175	-0.2923	No
121	NEUROD6	1418047_at	15630	-0.209	-0.3018	No
122	ZNF24	1422810_at 1426895_at 1426896_at 1430650_at 1430651_s_at 1450762_s_at	15782	-0.231	-0.3078	No
123	FAU	1417452_a_at	15835	-0.240	-0.3093	No
124	PLK4	1419838_s_at 1426580_at 1452115_a_at	16050	-0.281	-0.3181	No
125	RANBP2	1422621_at 1440104_at 1445883_at 1450690_at	16092	-0.289	-0.3189	No
126	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	16147	-0.299	-0.3203	No
127	ATF1	1417296_at	16502	-0.369	-0.3352	No
128	ANK2	1434264_at 1434265_s_at 1440042_at 1440043_at 1443548_at 1444023_at 1445346_at 1446108_at 1459317_at	16623	-0.397	-0.3392	No
129	SACM1L	1416500_at 1438900_at	16713	-0.425	-0.3417	No
130	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	16748	-0.432	-0.3417	No
131	SMARCA1	1460292_a_at	16790	-0.441	-0.3419	No
132	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	16806	-0.445	-0.3409	No
133	PSMD12	1448492_a_at	16856	-0.459	-0.3414	No
134	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	16974	-0.491	-0.3450	No
135	ZFHX1B	1422748_at 1434298_at 1442393_at 1445518_at 1454200_at 1456389_at	17050	-0.506	-0.3465	No
136	ATP10D	1436544_at	17052	-0.507	-0.3447	No
137	CBX8	1419198_at 1419199_at	17086	-0.518	-0.3443	No
138	EDG5	1428176_at 1447880_x_at	17150	-0.532	-0.3452	No
139	MCAM	1416357_a_at	17254	-0.568	-0.3478	No
140	PKP4	1438677_at 1452209_at	17374	-0.601	-0.3510	No
141	YWHAG	1420816_at 1420817_at 1450012_x_at 1459693_x_at	17423	-0.614	-0.3509	No
142	NINJ1	1438928_x_at 1441281_s_at 1447549_x_at 1448417_at	17481	-0.634	-0.3511	No
143	CCBL1	1428151_x_at 1438348_x_at 1446302_at 1452678_a_at	17491	-0.637	-0.3492	No
144	CALCRL	1418489_a_at 1425814_a_at 1440685_at 1459536_at	17572	-0.666	-0.3503	No
145	GEM	1426063_a_at	17669	-0.693	-0.3522	No
146	SLC39A13	1423926_at	17744	-0.713	-0.3529	No
147	GAK	1426703_at 1426704_at	17920	-0.776	-0.3580	No
148	RBMS2	1423540_at 1433979_at	18274	-0.904	-0.3709	No
149	SRPR	1423670_a_at 1427570_at	18310	-0.917	-0.3690	No
150	TBRG4	1417658_at 1442793_s_at 1448795_a_at 1448796_s_at	18484	-0.974	-0.3734	No
151	CSTF3	1424723_s_at 1443909_at	18836	-1.094	-0.3854	No
152	SLC30A5	1422497_at	18926	-1.131	-0.3852	No
153	CXCL16	1418718_at 1449195_s_at	19018	-1.177	-0.3850	No
154	UBQLN2	1420844_at 1450021_at 1456627_at	19176	-1.252	-0.3875	No
155	RPS6KA3	1427299_at 1441360_at 1452383_at	19437	-1.400	-0.3943	Yes
156	SLC18A2	1437079_at	19475	-1.425	-0.3906	Yes
157	CCNI	1416427_at 1448334_a_at 1448335_s_at 1458536_at 1459602_at	19485	-1.435	-0.3856	Yes
158	HNRPA2B1	1420365_a_at 1433829_a_at 1433830_at 1434047_x_at	19519	-1.461	-0.3817	Yes
159	BCL2L13	1424406_at 1429539_at	19651	-1.540	-0.3819	Yes
160	SMARCE1	1422675_at 1422676_at 1430822_at	19764	-1.620	-0.3810	Yes
161	ZMYND15	1438498_at	19798	-1.646	-0.3764	Yes
162	EIF5A	1437859_x_at 1451470_s_at	19803	-1.648	-0.3704	Yes
163	CD160	1420066_s_at 1420067_at 1420396_at 1456847_at	19836	-1.670	-0.3656	Yes
164	AGPAT1	1421024_at 1421025_at	19846	-1.677	-0.3597	Yes
165	PDE7A	1423313_at 1423314_s_at 1450933_at 1451839_a_at 1458218_s_at	20019	-1.817	-0.3608	Yes
166	NR4A3	1421079_at 1421080_at	20103	-1.887	-0.3575	Yes
167	TAF10	1448784_at	20133	-1.917	-0.3517	Yes
168	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	20185	-1.957	-0.3467	Yes
169	SEC63	1419819_s_at 1424924_at 1424925_at 1424926_at 1457988_at	20200	-1.968	-0.3399	Yes
170	ABCF3	1426747_at 1426748_s_at 1452177_at	20244	-1.996	-0.3344	Yes
171	DDX3X	1416467_at 1423042_at 1423043_s_at	20266	-2.006	-0.3279	Yes
172	PRKAG1	1417690_at 1433533_x_at 1457803_at	20271	-2.010	-0.3205	Yes
173	GOLGA2	1448625_at	20360	-2.066	-0.3168	Yes
174	IKBKB	1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at	20388	-2.086	-0.3102	Yes
175	MAFF	1418936_at	20419	-2.118	-0.3037	Yes
176	CKB	1455106_a_at	20450	-2.152	-0.2970	Yes
177	OSBP	1460350_at	20463	-2.166	-0.2894	Yes
178	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	20487	-2.189	-0.2822	Yes
179	USP48	1419277_at 1419278_at 1424056_at	20535	-2.248	-0.2760	Yes
180	RNF5	1422888_at	20827	-2.618	-0.2795	Yes
181	PPP6C	1424346_at 1424347_at	20838	-2.638	-0.2701	Yes
182	RFX5	1423103_at	20991	-2.890	-0.2663	Yes
183	ATP6V0C	1416392_a_at 1435732_x_at 1438925_x_at	21023	-2.950	-0.2566	Yes
184	PPP2R2A	1429715_at 1437730_at 1453260_a_at	21059	-3.027	-0.2469	Yes
185	GOLGA5	1418447_at	21062	-3.034	-0.2356	Yes
186	ADNP	1423069_at	21105	-3.135	-0.2258	Yes
187	DACT1	1417937_at	21253	-3.502	-0.2194	Yes
188	SH2D2A	1449105_at	21347	-3.804	-0.2094	Yes
189	PRG1	1417426_at	21371	-3.882	-0.1959	Yes
190	DUSP1	1448830_at	21619	-5.241	-0.1876	Yes
191	RAB6A	1447776_x_at 1448304_a_at 1448305_at	21770	-6.682	-0.1694	Yes
192	NR4A1	1416505_at	21809	-7.139	-0.1444	Yes
193	NR4A2	1447863_s_at 1450749_a_at 1450750_a_at 1455034_at	21861	-7.700	-0.1179	Yes
194	PCQAP	1441617_at 1444680_at 1444688_at 1448435_at	21875	-7.754	-0.0894	Yes
195	ARF4	1423052_at 1423053_at 1434074_x_at 1439367_x_at 1442905_at 1457348_at	21914	-8.086	-0.0608	Yes
196	EGR2	1427682_a_at 1427683_at	21921	-8.208	-0.0303	Yes
197	EGR3	1421486_at 1436329_at	21923	-8.252	0.0006	Yes