Details for gene set V$E2F

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	SCID
GeneSet	V$E2F_Q6
Enrichment Score (ES)	0.37397107
Normalized Enrichment Score (NES)	1.5171475
Nominal p-value	0.0
FDR q-value	0.08846061
FWER p-Value	0.784

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	26	7.887	0.0278	Yes
2	CDT1	1424143_a_at 1424144_at 1455791_at	87	6.599	0.0493	Yes
3	POLR2A	1422311_a_at 1426242_at 1458710_at	154	5.273	0.0656	Yes
4	NOLC1	1428869_at 1428870_at 1450087_a_at	157	5.258	0.0848	Yes
5	CDC6	1417019_a_at	179	5.023	0.1023	Yes
6	MCM6	1416251_at 1438852_x_at 1447756_x_at	182	5.000	0.1206	Yes
7	GMNN	1417506_at	184	4.969	0.1388	Yes
8	RAD51	1418281_at	198	4.831	0.1560	Yes
9	SNRPD1	1416336_s_at	243	4.511	0.1705	Yes
10	CLSPN	1441984_at 1456280_at	305	4.093	0.1828	Yes
11	UNG	1425753_a_at	393	3.740	0.1925	Yes
12	POLD1	1448187_at 1456055_x_at	413	3.679	0.2051	Yes
13	RANBP1	1422547_at	490	3.453	0.2143	Yes
14	RQCD1	1450887_at	578	3.231	0.2222	Yes
15	PHF5A	1424170_at	640	3.083	0.2307	Yes
16	TOPBP1	1452241_at 1458480_at	680	2.980	0.2399	Yes
17	DNAJC9	1426473_at	744	2.841	0.2474	Yes
18	UXT	1418986_a_at	817	2.729	0.2542	Yes
19	MCM2	1434079_s_at 1448777_at	864	2.652	0.2618	Yes
20	MXD3	1422970_at 1438847_at 1448878_at	880	2.625	0.2707	Yes
21	YBX2	1420762_a_at	914	2.565	0.2786	Yes
22	ATF5	1425927_a_at	927	2.543	0.2874	Yes
23	WEE1	1416773_at 1416774_at	973	2.481	0.2945	Yes
24	ACO2	1436934_s_at 1442102_at 1451002_at	1096	2.321	0.2974	Yes
25	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	1113	2.307	0.3051	Yes
26	POLA2	1425794_at 1448369_at 1456713_at	1163	2.239	0.3111	Yes
27	SLC9A5	1420070_a_at 1455760_at	1189	2.218	0.3181	Yes
28	HIRA	1436241_s_at 1450049_a_at 1450050_at 1459103_at	1200	2.206	0.3258	Yes
29	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	1211	2.198	0.3334	Yes
30	POLD3	1426838_at 1426839_at 1443733_x_at 1459647_at	1340	2.099	0.3352	Yes
31	MRPL40	1448849_at	1386	2.068	0.3407	Yes
32	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	1639	1.933	0.3363	Yes
33	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	1775	1.859	0.3369	Yes
34	PCSK1	1421396_at	1892	1.786	0.3381	Yes
35	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	1919	1.772	0.3435	Yes
36	NELL2	1423560_at 1423561_at	1955	1.755	0.3483	Yes
37	SYNGR4	1418875_at	2023	1.710	0.3515	Yes
38	CDCA7	1428069_at 1445681_at	2034	1.706	0.3573	Yes
39	FANCD2	1430916_at 1438339_at 1439091_at 1442092_at	2078	1.682	0.3615	Yes
40	PRPS1	1416052_at	2163	1.639	0.3637	Yes
41	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	2179	1.627	0.3690	Yes
42	AK2	1448450_at 1448451_at	2254	1.592	0.3714	Yes
43	RRM2	1416120_at 1434437_x_at 1448226_at	2434	1.506	0.3687	Yes
44	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	2441	1.502	0.3740	Yes
45	MCM8	1429557_at	2690	1.405	0.3677	No
46	PB1	1426877_a_at 1426878_at 1427266_at 1442603_at	3174	1.261	0.3502	No
47	EPHB1	1455188_at	3253	1.242	0.3512	No
48	JPH1	1421520_at 1438428_at	3292	1.235	0.3540	No
49	E2F7	1437187_at	3452	1.200	0.3511	No
50	ZBTB4	1429722_at 1460488_at	3591	1.168	0.3490	No
51	PAQR4	1423101_at	3598	1.166	0.3530	No
52	PKMYT1	1418481_at 1438601_at	3669	1.152	0.3540	No
53	STMN1	1415849_s_at	4037	1.088	0.3412	No
54	INSM1	1421399_at 1455865_at	4319	1.043	0.3321	No
55	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	4532	1.018	0.3261	No
56	POLE2	1427094_at 1431440_at	4567	1.013	0.3283	No
57	HNRPD	1425142_a_at 1446083_at	4634	1.006	0.3289	No
58	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	4719	0.999	0.3288	No
59	SFRS7	1424033_at 1424883_s_at 1436871_at	4848	0.983	0.3265	No
60	DNAJC5G	1437814_at	5119	0.949	0.3176	No
61	RASAL2	1436910_at 1444671_at	5125	0.949	0.3208	No
62	RBL1	1424156_at 1425166_at 1432604_at 1454293_at	5146	0.945	0.3234	No
63	STK35	1431107_at 1439802_at	5291	0.925	0.3202	No
64	HMGN2	1433507_a_at	5345	0.917	0.3211	No
65	MCM4	1416214_at 1436708_x_at	5554	0.888	0.3148	No
66	TREX2	1449367_at	5642	0.877	0.3140	No
67	TMPO	1421237_at 1426020_at 1426349_s_at 1428976_at 1452036_a_at	5753	0.861	0.3122	No
68	FHOD1	1435557_at	5854	0.848	0.3107	No
69	ATAD2	1436174_at 1443146_at 1443229_at	5878	0.845	0.3127	No
70	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	6042	0.827	0.3083	No
71	HS6ST3	1421599_at	6063	0.824	0.3104	No
72	TYRO3	1425248_a_at 1425249_a_at	6450	0.774	0.2955	No
73	CORT	1449820_at	6608	0.756	0.2911	No
74	PCNA	1417947_at	6659	0.750	0.2915	No
75	H2AFZ	1441370_at	6710	0.743	0.2920	No
76	RAVER1	1427110_at 1427111_s_at 1444966_at	6792	0.736	0.2910	No
77	AP4M1	1418846_at	6908	0.721	0.2883	No
78	ING3	1422805_a_at 1422806_x_at 1450760_a_at 1460082_at	6975	0.714	0.2879	No
79	CDC45L	1416575_at 1457838_at	7163	0.692	0.2819	No
80	E2F1	1417878_at 1431875_a_at 1447840_x_at	7270	0.679	0.2795	No
81	KCNA6	1421568_at 1441049_at 1456954_at	7455	0.656	0.2735	No
82	ILF3	1422546_at 1436802_at 1460669_at	8047	0.595	0.2485	No
83	E2F3	1427462_at 1434564_at	8495	0.550	0.2300	No
84	MYH10	1441057_at 1452740_at	8520	0.547	0.2309	No
85	SEMA6A	1421414_a_at 1425903_at 1436458_at	8666	0.533	0.2262	No
86	RHD	1417049_at	9119	0.487	0.2072	No
87	GRIA4	1421351_at 1435722_at 1436772_at 1440891_at 1443285_at 1458230_at 1460097_at	9538	0.447	0.1897	No
88	EFNA5	1421796_a_at 1436866_at 1440052_at 1446383_at 1451930_at	9868	0.416	0.1761	No
89	SLC6A4	1417150_at	10178	0.385	0.1633	No
90	GABRB3	1421189_at 1421190_at 1435021_at	10710	0.335	0.1402	No
91	SOAT1	1417695_a_at 1417696_at 1417697_at 1426818_at 1448068_at	11491	0.262	0.1053	No
92	MAZ	1427099_at	11722	0.237	0.0956	No
93	SFRS10	1419543_a_at 1427432_a_at 1441466_at 1446496_at	11955	0.213	0.0857	No
94	HNRPR	1427129_a_at 1438807_at 1452030_a_at	12145	0.196	0.0778	No
95	HOXC10	1439798_at	12216	0.190	0.0753	No
96	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	12224	0.189	0.0756	No
97	ARHGAP11A	1438434_at	12675	0.148	0.0555	No
98	UFD1L	1418087_at 1432367_a_at	12816	0.136	0.0496	No
99	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	12893	0.127	0.0466	No
100	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	13298	0.082	0.0283	No
101	CSPG2	1421694_a_at 1427256_at 1427257_at 1433043_at 1433044_at 1447586_at 1447887_x_at 1459767_x_at	13424	0.068	0.0228	No
102	PHF15	1430081_at 1455345_at	13491	0.061	0.0200	No
103	ACBD6	1452601_a_at 1453199_at	13586	0.050	0.0159	No
104	IPO7	1442511_at 1454955_at 1458165_at	13657	0.044	0.0128	No
105	DDX17	1437773_x_at 1439037_at 1452155_a_at	14190	-0.015	-0.0116	No
106	PODN	1435180_at	14274	-0.025	-0.0153	No
107	MSH2	1416988_at 1447888_x_at	15547	-0.196	-0.0730	No
108	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	15580	-0.201	-0.0737	No
109	FMO4	1425799_at 1444852_at	15598	-0.204	-0.0737	No
110	SLC38A1	1415903_at 1454764_s_at	15849	-0.242	-0.0843	No
111	CASP8AP2	1449217_at	16514	-0.373	-0.1135	No
112	PHF13	1455175_at	16607	-0.393	-0.1162	No
113	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	16639	-0.402	-0.1162	No
114	GSPT1	1426736_at 1426737_at 1435000_at 1446550_at 1452168_x_at 1455173_at	16648	-0.405	-0.1151	No
115	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	16714	-0.426	-0.1165	No
116	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	16974	-0.491	-0.1266	No
117	CDC25A	1417131_at 1417132_at 1445995_at	17039	-0.504	-0.1277	No
118	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	17098	-0.521	-0.1284	No
119	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	17099	-0.522	-0.1265	No
120	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	17189	-0.545	-0.1286	No
121	NUP153	1441689_at 1441733_s_at 1452176_at	17190	-0.545	-0.1266	No
122	GPRC5B	1424613_at 1451411_at	17285	-0.575	-0.1288	No
123	PRKDC	1451576_at	17670	-0.693	-0.1439	No
124	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	17738	-0.710	-0.1443	No
125	CCNT1	1419313_at 1456477_at	17749	-0.716	-0.1422	No
126	EED	1448653_at	17850	-0.755	-0.1440	No
127	PPM1D	1434142_at 1449092_at 1459069_at	17915	-0.774	-0.1441	No
128	ADAMTS2	1435990_at 1455720_at 1457058_at	18037	-0.823	-0.1466	No
129	HCN3	1451023_at	18115	-0.847	-0.1470	No
130	FBXO5	1429499_at	18355	-0.930	-0.1546	No
131	EZH2	1416544_at 1444263_at	18393	-0.943	-0.1528	No
132	USP37	1434242_at 1438212_at	18578	-1.001	-0.1576	No
133	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	18766	-1.066	-0.1623	No
134	USP52	1426700_a_at	19020	-1.177	-0.1696	No
135	BRMS1L	1452850_s_at 1460443_at	19085	-1.203	-0.1681	No
136	PHC1	1423212_at	19196	-1.261	-0.1685	No
137	TBX6	1449868_at	19330	-1.339	-0.1697	No
138	ALDH6A1	1448104_at	19447	-1.406	-0.1698	No
139	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	19448	-1.408	-0.1647	No
140	PRPF4B	1425497_a_at 1425498_at 1436427_at 1451732_at 1451909_a_at 1455696_a_at	19505	-1.448	-0.1619	No
141	HNRPUL1	1451984_at	19530	-1.468	-0.1576	No
142	SUMO1	1438289_a_at 1444557_at 1451005_at 1456349_x_at	19865	-1.693	-0.1668	No
143	DDB2	1425706_a_at 1436680_s_at	20152	-1.933	-0.1728	No
144	UGCGL1	1432318_at 1448009_at 1455839_at	20178	-1.953	-0.1668	No
145	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	20185	-1.957	-0.1598	No
146	IL4I1	1419192_at	20344	-2.050	-0.1596	No
147	ZCCHC8	1423755_at 1441639_at	20345	-2.051	-0.1520	No
148	SLCO3A1	1418030_at 1434537_at 1448918_at	20495	-2.198	-0.1508	No
149	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	20497	-2.200	-0.1428	No
150	DCK	1428838_a_at 1439012_a_at 1449176_a_at	20506	-2.207	-0.1350	No
151	CTCF	1418330_at 1449042_at	20645	-2.384	-0.1326	No
152	PPP1CC	1440594_at	20736	-2.496	-0.1276	No
153	PIM1	1423006_at 1435458_at	20778	-2.545	-0.1201	No
154	SP3	1431804_a_at 1459360_at	21004	-2.910	-0.1197	No
155	STAG2	1421849_at 1450396_at	21067	-3.048	-0.1114	No
156	RAB11B	1423448_at	21163	-3.275	-0.1037	No
157	PPP1R8	1424554_at 1435821_s_at	21545	-4.639	-0.1042	No
158	KBTBD7	1428192_at 1439865_at 1452700_s_at	21590	-5.042	-0.0877	No
159	MCM3	1420029_at 1426653_at	21738	-6.271	-0.0714	No
160	ARID4A	1436191_at 1438464_at 1456420_at	21755	-6.438	-0.0485	No
161	ID3	1416630_at	21832	-7.406	-0.0247	No
162	NUP62	1415925_a_at 1415926_at 1437612_at 1438917_x_at 1447905_x_at 1448150_at	21911	-8.023	0.0011	No