Details for gene set V$AP2_Q6

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$AP2_Q6_01
Enrichment Score (ES)	-0.39498088
Normalized Enrichment Score (NES)	-1.5482569
Nominal p-value	0.0
FDR q-value	0.12747107
FWER p-Value	0.815

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PTK7	1452589_at	137	5.494	0.0168	No
2	LHX2	1418317_at	570	3.257	0.0107	No
3	RPL36AL	1448697_s_at	660	3.032	0.0194	No
4	ITPKA	1424037_at	865	2.651	0.0211	No
5	SYMPK	1428673_at	933	2.540	0.0287	No
6	UBE2S	1416726_s_at 1430962_at	1103	2.316	0.0307	No
7	PLCB3	1448661_at	1212	2.197	0.0350	No
8	ST7	1418967_a_at	1248	2.169	0.0425	No
9	RGMA	1438241_at	1267	2.154	0.0508	No
10	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	1441	2.030	0.0514	No
11	CEECAM1	1435345_at	1619	1.941	0.0514	No
12	CPSF4	1424469_a_at	1798	1.847	0.0510	No
13	HOXB2	1444204_at 1449397_at	1854	1.808	0.0561	No
14	CNP	1418980_a_at 1437341_x_at 1449296_a_at	1890	1.787	0.0620	No
15	SLC18A3	1422203_at	1918	1.773	0.0682	No
16	NTF5	1440353_at	1959	1.752	0.0737	No
17	RBM6	1417213_a_at 1440223_at 1452466_a_at 1458912_at	1983	1.737	0.0800	No
18	SLC25A28	1424776_a_at	2043	1.701	0.0844	No
19	EYA1	1421727_at 1443117_at 1457424_at	2049	1.699	0.0914	No
20	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	2241	1.602	0.0893	No
21	TFEB	1422566_at	2702	1.403	0.0741	No
22	GPR3	1460275_at	2817	1.365	0.0746	No
23	FGD1	1416865_at 1437369_at 1459278_at	2954	1.324	0.0739	No
24	GRK6	1437436_s_at 1450480_a_at 1451672_at	3138	1.270	0.0709	No
25	EPHB1	1455188_at	3253	1.242	0.0708	No
26	CRSP7	1452282_at 1458377_at	3427	1.206	0.0680	No
27	UBTF	1453097_a_at 1455490_at 1460304_a_at	3495	1.188	0.0699	No
28	FASTK	1460635_at	3565	1.174	0.0716	No
29	PAQR4	1423101_at	3598	1.166	0.0751	No
30	MTCH2	1430474_a_at 1430969_at 1437806_x_at 1438842_at 1438843_x_at 1448654_at	3605	1.164	0.0797	No
31	STMN1	1415849_s_at	4037	1.088	0.0645	No
32	NCOA6IP	1421904_at 1421905_at 1439710_at 1446164_at 1450400_at 1450401_at	4055	1.086	0.0683	No
33	SPRED1	1423160_at 1423161_s_at 1423162_s_at 1428777_at 1441517_at 1442859_at 1443652_x_at 1445228_at 1452911_at 1460116_s_at	4318	1.043	0.0606	No
34	CGREF1	1424528_at 1424529_s_at	4356	1.039	0.0633	No
35	PPP2R5A	1423911_at 1440189_at 1444036_at	4471	1.023	0.0624	No
36	MGAT4B	1424720_at	4483	1.023	0.0662	No
37	RHBDF1	1424138_at	4742	0.997	0.0585	No
38	CENTD2	1428064_at	4782	0.991	0.0609	No
39	ERF	1422114_at 1435561_at	5026	0.962	0.0537	No
40	FGF11	1421793_at 1439959_at	5313	0.922	0.0445	No
41	FXYD1	1421374_a_at	5323	0.921	0.0479	No
42	CNNM4	1421635_at 1431233_at	5431	0.904	0.0468	No
43	RASIP1	1428016_a_at	5545	0.889	0.0454	No
44	DBN1	1426024_a_at 1451734_a_at	5756	0.860	0.0393	No
45	OSR2	1426155_a_at 1430950_at	5808	0.854	0.0406	No
46	ARF3	1421789_s_at 1423973_a_at 1434787_at 1437331_a_at 1456007_at	5831	0.851	0.0432	No
47	SLC17A7	1428986_at	6177	0.807	0.0307	No
48	ANP32A	1421918_at 1434555_at 1450407_a_at	6185	0.806	0.0338	No
49	CDK9	1417269_at 1457240_at	6358	0.786	0.0292	No
50	TRIM28	1415869_a_at 1456308_x_at	6578	0.759	0.0223	No
51	MIB1	1433853_at 1446818_at 1451818_at 1454740_at	6672	0.748	0.0212	No
52	CXXC5	1431469_a_at 1448960_at	6785	0.736	0.0191	No
53	MESDC1	1416397_at 1416398_at	6995	0.711	0.0125	No
54	IL11	1449982_at	7060	0.704	0.0125	No
55	CENTG2	1435432_at 1435433_at 1437394_at 1442632_at 1457978_at 1459053_at 1459389_at	7166	0.692	0.0106	No
56	PLXNC1	1423213_at 1423214_at 1443433_at 1443434_s_at 1450905_at 1450906_at	7474	0.654	-0.0007	No
57	CLDN5	1417839_at	7491	0.652	0.0013	No
58	EFNB3	1423085_at	7514	0.650	0.0030	No
59	KCNK3	1425341_at 1425342_a_at 1426058_a_at	8067	0.592	-0.0199	No
60	CCNG1	1420827_a_at 1450016_at 1450017_at	8404	0.559	-0.0330	No
61	FMNL1	1445636_at 1450212_at	8413	0.559	-0.0310	No
62	MYH10	1441057_at 1452740_at	8520	0.547	-0.0336	No
63	GNG8	1457755_at	8585	0.541	-0.0342	No
64	PORCN	1424220_a_at 1438753_at	8671	0.532	-0.0359	No
65	NXPH3	1419710_at	8759	0.524	-0.0377	No
66	COL12A1	1427391_a_at 1445751_at	8908	0.511	-0.0424	No
67	WNT5A	1436791_at 1448818_at 1456976_at	8935	0.508	-0.0414	No
68	RFX1	1422109_at 1436059_at	9123	0.487	-0.0480	No
69	ASCL1	1437086_at 1450164_at	9134	0.486	-0.0464	No
70	MN1	1454867_at	9590	0.441	-0.0654	No
71	MKNK2	1418300_a_at 1449029_at	9830	0.419	-0.0747	No
72	FOXA3	1431900_a_at	9950	0.406	-0.0784	No
73	HOXA1	1420565_at	10213	0.381	-0.0889	No
74	FKBP14	1433481_at 1458225_at	10351	0.369	-0.0936	No
75	KCNQ4	1435721_at 1442909_at	10352	0.369	-0.0921	No
76	SLC6A11	1433989_at 1453871_at	10709	0.335	-0.1070	No
77	CAMTA2	1426901_s_at 1452229_at	10813	0.324	-0.1104	No
78	GP1BB	1422977_at 1456427_at	10854	0.320	-0.1109	No
79	MAFB	1451715_at 1451716_at	11067	0.303	-0.1193	No
80	POFUT1	1443881_at 1450137_at 1456323_at	11414	0.269	-0.1341	No
81	KCNH8	1440980_at 1459015_at	11450	0.265	-0.1346	No
82	PGF	1418471_at	11545	0.255	-0.1379	No
83	HOXB9	1452317_at	11753	0.233	-0.1464	No
84	DMPK	1422989_a_at 1434944_at	11838	0.224	-0.1493	No
85	PPM1E	1434990_at 1445741_at	11937	0.214	-0.1529	No
86	KCNJ12	1422871_at	11946	0.213	-0.1524	No
87	APLP1	1416134_at 1435857_s_at	12037	0.205	-0.1557	No
88	SOX2	1416967_at	12142	0.197	-0.1596	No
89	PFKFB3	1416432_at 1419882_at 1456676_a_at	12330	0.180	-0.1675	No
90	LRFN5	1441502_at 1454687_at	12376	0.175	-0.1688	No
91	PTMA	1423455_at	12741	0.143	-0.1849	No
92	KLF13	1432543_a_at 1456030_at	12818	0.136	-0.1878	No
93	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	12865	0.129	-0.1894	No
94	FBXL11	1435329_at 1443336_at 1444358_at 1455942_at 1458449_at	13097	0.106	-0.1996	No
95	ADAMTS5	1422561_at 1450658_at 1456404_at	13174	0.097	-0.2027	No
96	HDLBP	1415987_at 1415988_at 1419806_at 1419869_s_at 1443546_at 1449615_s_at	13334	0.078	-0.2097	No
97	CPEB3	1437765_at 1445868_at 1455372_at 1456048_at	13415	0.069	-0.2130	No
98	PHF15	1430081_at 1455345_at	13491	0.061	-0.2162	No
99	ATP5H	1423676_at 1435112_a_at	13568	0.052	-0.2195	No
100	NR2E1	1434921_at 1457289_at	13600	0.049	-0.2207	No
101	HEY1	1415999_at	13648	0.044	-0.2227	No
102	TMEM25	1436644_x_at 1452962_at	13797	0.028	-0.2294	No
103	ADRB1	1423420_at	13803	0.028	-0.2295	No
104	BTBD14B	1420968_at 1420969_at 1433139_at 1433140_a_at 1443382_s_at 1458200_at	13858	0.022	-0.2319	No
105	KCNAB3	1421790_a_at 1423950_at	14016	0.005	-0.2391	No
106	ACVR2B	1419140_at 1439856_at	14312	-0.029	-0.2525	No
107	NCOA2	1435233_at 1435234_at 1446827_at 1450458_at	14437	-0.046	-0.2580	No
108	POU5F1	1417945_at	14441	-0.046	-0.2580	No
109	HPN	1420712_a_at	14568	-0.061	-0.2635	No
110	KCNH5	1441742_at	14617	-0.067	-0.2654	No
111	SALL1	1450489_at	14738	-0.085	-0.2706	No
112	ACCN1	1417994_a_at	14767	-0.088	-0.2715	No
113	PDGFB	1450413_at 1450414_at	14850	-0.097	-0.2749	No
114	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	14923	-0.106	-0.2777	No
115	DLGAP4	1426465_at 1455548_at	14930	-0.107	-0.2776	No
116	CHAT	1440070_at	14982	-0.114	-0.2794	No
117	FGF9	1420795_at 1438718_at 1445258_at	15056	-0.126	-0.2823	No
118	SLC7A10	1421093_at	15072	-0.127	-0.2824	No
119	SFRS16	1428961_a_at	15728	-0.221	-0.3116	No
120	SMARCD1	1448913_at	15733	-0.222	-0.3108	No
121	ARID1A	1447104_at	15948	-0.264	-0.3196	No
122	SIPA1	1416206_at	15963	-0.267	-0.3191	No
123	DNMT3A	1423063_at 1423064_at 1423065_at 1423066_at 1442309_at 1460324_at	16427	-0.354	-0.3389	No
124	OAZ2	1426763_at 1426764_at 1442541_at 1442735_at	16430	-0.354	-0.3375	No
125	SH3BP4	1416305_at 1455250_at	17135	-0.529	-0.3676	No
126	RAB35	1433922_at	17233	-0.560	-0.3697	No
127	CYB561D1	1431021_at 1434226_at 1459837_at	17419	-0.612	-0.3757	No
128	SYT7	1423012_at 1441927_at 1446641_at 1460081_at	17434	-0.618	-0.3737	No
129	PRDM16	1429308_at 1429309_at 1440745_at 1440870_at 1443251_at	17471	-0.630	-0.3727	No
130	PABPC1	1418883_a_at 1419500_at 1453840_at	17530	-0.654	-0.3726	No
131	C1ORF24	1422567_at 1454942_at	17582	-0.669	-0.3721	No
132	NFYC	1448963_at	17610	-0.678	-0.3705	No
133	TACC2	1425745_a_at 1447891_at	17726	-0.707	-0.3728	No
134	PIP5K2B	1427438_at 1435068_at 1441164_at 1444128_at	18049	-0.828	-0.3842	No
135	LDB1	1452024_a_at	18109	-0.846	-0.3833	No
136	GPR12	1449472_at 1457702_at	18327	-0.921	-0.3894	No
137	PLAGL2	1417517_at 1417518_at 1417519_at 1442235_at	18433	-0.959	-0.3902	No
138	FNBP1	1426983_at 1451806_at 1453746_at 1458639_at 1460047_at	18538	-0.992	-0.3908	Yes
139	B4GALT1	1418014_a_at 1458616_at 1458773_at	18567	-0.999	-0.3879	Yes
140	MGAT2	1426350_at 1452037_at	18641	-1.022	-0.3869	Yes
141	ZNRF2	1431154_at 1434016_at 1434017_at 1444735_at 1455290_at 1455291_s_at	18724	-1.047	-0.3863	Yes
142	BAHD1	1433703_s_at	18798	-1.079	-0.3851	Yes
143	CIRBP	1416332_at	18829	-1.090	-0.3819	Yes
144	SMAD7	1423389_at 1440952_at 1443771_x_at	18863	-1.105	-0.3788	Yes
145	CHD4	1436343_at 1438476_a_at 1451295_a_at	18887	-1.114	-0.3751	Yes
146	PSCD2	1450103_a_at	19046	-1.189	-0.3774	Yes
147	SLC37A4	1417042_at	19083	-1.203	-0.3740	Yes
148	PIAS1	1422581_at 1446448_at 1455486_at 1455611_at	19130	-1.232	-0.3709	Yes
149	DTNB	1437651_a_at 1445329_at 1446012_at	19200	-1.263	-0.3688	Yes
150	TLK2	1416944_a_at 1431827_a_at 1454018_at 1457357_at	19291	-1.314	-0.3674	Yes
151	GLTP	1419027_s_at	19304	-1.321	-0.3624	Yes
152	NRF1	1420978_at 1424787_a_at 1434627_at 1439545_at 1445914_at	19349	-1.348	-0.3587	Yes
153	RAD21	1416161_at 1416162_at 1455938_x_at	19482	-1.433	-0.3588	Yes
154	RNF40	1438191_a_at	19515	-1.460	-0.3541	Yes
155	BCOR	1428773_s_at 1429438_at 1452910_at	19579	-1.490	-0.3507	Yes
156	VEGF	1420909_at 1451959_a_at	19669	-1.555	-0.3483	Yes
157	PCTK1	1415956_a_at 1438314_at 1443296_at 1460169_a_at	19853	-1.685	-0.3496	Yes
158	RASGRP2	1417804_at 1438932_at 1438933_x_at 1442264_at 1449613_at	19877	-1.701	-0.3435	Yes
159	KIF3C	1434947_at 1448946_at	20043	-1.844	-0.3433	Yes
160	SLC12A4	1417446_at	20069	-1.860	-0.3366	Yes
161	RDH10	1426968_a_at 1460632_at	20081	-1.868	-0.3293	Yes
162	NEO1	1423513_at 1434931_at 1440789_at 1444295_at 1447693_s_at 1447694_x_at 1459485_at	20193	-1.964	-0.3261	Yes
163	SPATA6	1418650_at 1418651_at 1438023_at 1445355_at	20301	-2.024	-0.3225	Yes
164	DGCR8	1422981_at 1435439_at 1446169_at 1455311_at	20348	-2.056	-0.3160	Yes
165	CIC	1415746_at	20569	-2.283	-0.3165	Yes
166	CTCF	1418330_at 1449042_at	20645	-2.384	-0.3099	Yes
167	EIF4G2	1415863_at 1452758_s_at	20796	-2.567	-0.3060	Yes
168	CELSR2	1422073_a_at 1435336_at	20936	-2.775	-0.3007	Yes
169	MGEA5	1422900_at 1422901_at 1422902_s_at 1433654_at 1439081_at	21049	-2.990	-0.2932	Yes
170	FBS1	1425276_at 1451645_at	21069	-3.053	-0.2813	Yes
171	PHF1	1416542_at	21072	-3.057	-0.2685	Yes
172	RAP1GDS1	1425266_a_at 1459768_x_at	21110	-3.139	-0.2570	Yes
173	ANGPTL2	1421002_at 1431848_at	21121	-3.158	-0.2441	Yes
174	KCNH2	1449544_a_at	21191	-3.341	-0.2332	Yes
175	TERF2	1421147_at 1455651_at 1459650_at	21215	-3.403	-0.2200	Yes
176	NCOA6	1423374_at	21314	-3.672	-0.2090	Yes
177	TRIM39	1418851_at	21349	-3.809	-0.1946	Yes
178	JMJD1B	1428320_at 1438508_at 1458417_at	21480	-4.281	-0.1825	Yes
179	MAP3K7IP2	1423462_at 1451003_at	21552	-4.676	-0.1661	Yes
180	CRY1	1433733_a_at	21708	-5.979	-0.1480	Yes
181	BCAT2	1425764_a_at	21745	-6.347	-0.1230	Yes
182	BCL6	1421818_at 1450381_a_at	21833	-7.407	-0.0958	Yes
183	ADIPOR1	1424312_at 1439017_x_at 1451311_a_at	21855	-7.652	-0.0646	Yes
184	MLL5	1427236_a_at 1432601_at 1434704_at 1439107_a_at 1439108_at	21906	-7.945	-0.0334	Yes
185	EGR3	1421486_at 1436329_at	21923	-8.252	0.0006	Yes