Details for gene set HADDAD_HPCLYMPHO

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	HADDAD_HPCLYMPHO_ENRICHED
Enrichment Score (ES)	-0.48237672
Normalized Enrichment Score (NES)	-1.9421567
Nominal p-value	0.0
FDR q-value	0.012073514
FWER p-Value	0.168

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CORO2B	1434326_x_at 1434755_at	109	5.984	0.0122	No
2	HIST1H3D	1427863_at 1453573_at	132	5.532	0.0272	No
3	PCAF	1434037_s_at 1444473_at 1445105_at 1450821_at	247	4.469	0.0348	No
4	LRP2BP	1429704_at 1430684_s_at 1432039_a_at 1439821_at	273	4.291	0.0460	No
5	HPS4	1448629_at	1474	2.011	-0.0035	No
6	LRMP	1448409_at	1477	2.010	0.0022	No
7	CEP135	1444201_at	1505	2.000	0.0068	No
8	GNG7	1455190_at	1699	1.901	0.0034	No
9	VDAC1	1415998_at 1436992_x_at 1437192_x_at 1437452_x_at 1437947_x_at	1719	1.891	0.0079	No
10	ATM	1421205_at 1428830_at	1733	1.883	0.0128	No
11	QRSL1	1429317_at 1456542_s_at	1784	1.853	0.0158	No
12	SOD2	1417193_at 1417194_at 1442994_at 1444531_at 1448610_a_at 1454976_at	1842	1.815	0.0184	No
13	REXO2	1451259_at	1893	1.784	0.0212	No
14	ANAPC5	1416906_at 1433822_x_at 1435177_a_at 1435178_x_at 1453307_a_at 1456695_x_at	1924	1.770	0.0250	No
15	RBM6	1417213_a_at 1440223_at 1452466_a_at 1458912_at	1983	1.737	0.0273	No
16	FMR1	1423369_at 1426086_a_at 1452550_a_at	2137	1.652	0.0250	No
17	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	2336	1.549	0.0204	No
18	RRM2	1416120_at 1434437_x_at 1448226_at	2434	1.506	0.0202	No
19	ANKRD10	1416065_a_at 1429304_at 1429305_at 1440170_at 1447832_x_at 1448199_at	2612	1.435	0.0162	No
20	UBE2D2	1416475_at 1416476_a_at 1416477_at 1439655_at 1445885_at 1448356_at	2729	1.393	0.0149	No
21	TOP2A	1427724_at 1442454_at 1454694_a_at	2836	1.357	0.0139	No
22	CD72	1426112_a_at	2962	1.322	0.0120	No
23	PTPRE	1418539_a_at 1418540_a_at 1459638_at	2984	1.316	0.0148	No
24	RHOB	1449110_at	3309	1.231	0.0034	No
25	MEF2A	1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at	3313	1.230	0.0068	No
26	ZBTB10	1458695_at	3386	1.213	0.0070	No
27	PDCD6	1416027_at	3602	1.165	0.0005	No
28	MME	1422975_at	3673	1.151	0.0006	No
29	ATR	1427197_at 1438921_at 1445091_at	3756	1.139	0.0001	No
30	ITPR1	1417279_at 1443492_at 1457189_at 1460203_at	3827	1.125	0.0001	No
31	PXDN	1428259_at	3922	1.111	-0.0010	No
32	NPY	1419127_at	4111	1.076	-0.0066	No
33	PKD2	1417753_at 1441870_s_at	4153	1.068	-0.0054	No
34	UXS1	1426275_a_at 1452011_a_at	4267	1.051	-0.0076	No
35	GPR125	1426782_at 1431034_at 1444300_at	4348	1.040	-0.0083	No
36	SH3TC1	1427619_a_at	4431	1.028	-0.0091	No
37	VPS13A	1431327_at 1440146_at 1440482_at 1456592_at 1457674_at	4444	1.027	-0.0067	No
38	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	4473	1.023	-0.0050	No
39	PPM1A	1415678_at 1417221_at 1425537_at 1429500_at 1429501_s_at 1443903_at 1451943_a_at 1453171_s_at	4520	1.019	-0.0042	No
40	POU2AF1	1416957_at	4524	1.018	-0.0014	No
41	NID2	1423516_a_at	4645	1.005	-0.0040	No
42	TIA1	1416812_at 1416813_at 1416814_at 1423763_x_at 1431708_a_at 1437934_at 1441834_x_at 1453803_at 1454778_x_at	4670	1.002	-0.0023	No
43	SUV420H1	1434999_at 1442764_at 1451817_at 1455171_at	4673	1.002	0.0005	No
44	BARD1	1420594_at	4697	1.001	0.0024	No
45	TRIB2	1426640_s_at 1426641_at 1459852_x_at	4714	0.999	0.0045	No
46	DDR1	1415797_at 1415798_at 1435820_x_at 1437619_x_at 1438367_x_at 1439382_x_at 1456226_x_at 1459990_at	5072	0.955	-0.0092	No
47	HRK	1439854_at 1450366_at	5257	0.931	-0.0150	No
48	RB1CC1	1418968_at 1431605_at 1449292_at	5386	0.911	-0.0182	No
49	TMEM118	1435623_at	5408	0.908	-0.0166	No
50	HS3ST1	1423450_a_at	5433	0.904	-0.0151	No
51	CCDC81	1431839_a_at	5472	0.899	-0.0143	No
52	CTBP2	1422887_a_at 1439823_at	5476	0.898	-0.0118	No
53	TOB1	1423176_at 1440844_at	5630	0.879	-0.0163	No
54	P2RX5	1449433_at	5670	0.874	-0.0156	No
55	DBN1	1426024_a_at 1451734_a_at	5756	0.860	-0.0170	No
56	PLEKHF2	1423861_at 1423862_at	5868	0.847	-0.0197	No
57	DNASE2B	1450237_at	6157	0.810	-0.0306	No
58	AEBP1	1422514_at 1450637_a_at	6249	0.799	-0.0325	No
59	CD9	1416066_at	6354	0.786	-0.0350	No
60	CIITA	1421210_at 1421211_a_at 1447075_at	6576	0.759	-0.0430	No
61	PCNA	1417947_at	6659	0.750	-0.0446	No
62	TLE1	1422751_at 1434033_at	7248	0.683	-0.0698	No
63	RPL35A	1417317_s_at	7272	0.679	-0.0689	No
64	HIST1H1E	1422398_at 1440330_at 1443209_at 1445565_at	7303	0.675	-0.0683	No
65	CSH2	1415835_at	7324	0.672	-0.0673	No
66	COBL	1434917_at 1442076_at	7508	0.650	-0.0738	No
67	EIF1AY	1419736_a_at 1437071_at 1449576_at	8014	0.598	-0.0954	No
68	SCHIP1	1423025_a_at 1437700_at 1446421_at 1458588_at	8295	0.570	-0.1066	No
69	TOP2B	1416731_at 1416732_at 1448458_at 1456688_at	8527	0.547	-0.1157	No
70	MYLK	1425504_at 1425505_at 1425506_at	8626	0.537	-0.1187	No
71	SEMA6A	1421414_a_at 1425903_at 1436458_at	8666	0.533	-0.1189	No
72	PLXNA2	1429772_at 1446420_at 1451753_at 1453286_at 1455037_at 1458102_at 1459033_at	8770	0.523	-0.1222	No
73	PPFIBP1	1443029_at 1445577_at 1452759_s_at	9019	0.498	-0.1321	No
74	IGLL1	1420176_x_at 1420177_at	9050	0.495	-0.1321	No
75	TSPAN14	1423924_s_at	9188	0.481	-0.1370	No
76	SCN3A	1421705_at 1439204_at	9502	0.451	-0.1501	No
77	SNN	1422310_at 1452789_at	9545	0.446	-0.1508	No
78	ALDH5A1	1453065_at	9553	0.446	-0.1498	No
79	LRIG1	1419928_at 1434210_s_at 1441375_at 1449893_a_at 1458823_at	9840	0.418	-0.1618	No
80	MS4A1	1423226_at 1450912_at	9881	0.415	-0.1624	No
81	ELL3	1442514_a_at	9923	0.410	-0.1632	No
82	P4HA2	1417149_at	9976	0.403	-0.1644	No
83	TCF3	1436207_at 1450117_at	10239	0.379	-0.1754	No
84	EIF2AK3	1430371_x_at 1449278_at 1453505_a_at	10251	0.378	-0.1748	No
85	HIST1H4H	1428014_at 1431333_at	10550	0.351	-0.1875	No
86	TAF9B	1434960_at 1447829_x_at	10638	0.342	-0.1905	No
87	VPREB3	1422921_at	11361	0.274	-0.2230	No
88	SIAH2	1448170_at 1448171_at	11434	0.267	-0.2255	No
89	BLNK	1451780_at	11797	0.229	-0.2415	No
90	RPS11	1424000_a_at	12254	0.187	-0.2620	No
91	EFNB2	1419638_at 1419639_at 1440069_at 1449548_at 1449549_at	12280	0.184	-0.2626	No
92	AKAP12	1419706_a_at 1458235_at	12303	0.182	-0.2631	No
93	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	12344	0.179	-0.2644	No
94	MAG	1460219_at	12566	0.158	-0.2742	No
95	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	12585	0.156	-0.2745	No
96	TMCC1	1437776_at 1440384_at 1455353_at	12784	0.139	-0.2833	No
97	IL1A	1421473_at	12916	0.125	-0.2889	No
98	PCDH9	1439322_at 1442659_at 1444215_at 1444724_at 1445052_at 1445061_at 1457973_at	12927	0.124	-0.2890	No
99	MOG	1448768_at	12941	0.122	-0.2893	No
100	TCL1A	1422458_at	13197	0.094	-0.3008	No
101	CAV1	1449145_a_at	13411	0.070	-0.3104	No
102	PHF15	1430081_at 1455345_at	13491	0.061	-0.3138	No
103	ALOX5	1441962_at	13619	0.047	-0.3196	No
104	POU4F1	1429667_at 1429668_at	13756	0.033	-0.3257	No
105	MPPED2	1431751_a_at 1435285_at	13903	0.017	-0.3324	No
106	PLXNA1	1421232_at 1428623_at	14148	-0.010	-0.3436	No
107	PSPC1	1423192_at 1423193_at 1444748_at 1444957_at 1457723_at	14217	-0.017	-0.3467	No
108	IRF2	1418265_s_at 1447527_at	14417	-0.043	-0.3557	No
109	JUN	1417409_at 1448694_at	14535	-0.057	-0.3610	No
110	CD19	1450570_a_at	14726	-0.083	-0.3695	No
111	PTPRK	1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at	14762	-0.087	-0.3708	No
112	GLRX	1416592_at 1416593_at	14841	-0.096	-0.3741	No
113	E2F5	1417444_at 1447625_at 1460207_s_at	15067	-0.127	-0.3841	No
114	DUSP26	1425848_a_at	15154	-0.137	-0.3877	No
115	MLXIP	1426979_at	15157	-0.137	-0.3874	No
116	AK1	1422184_a_at 1423988_at	15158	-0.137	-0.3870	No
117	NGLY1	1417827_at 1440463_at 1441833_at	15185	-0.141	-0.3878	No
118	RCBTB1	1430213_at 1456433_at	15235	-0.148	-0.3896	No
119	PPP3CC	1420743_a_at 1430025_at	15239	-0.150	-0.3893	No
120	ARHGEF7	1424482_at 1449066_a_at	15317	-0.161	-0.3924	No
121	AUTS2	1427293_a_at 1438680_at 1441869_x_at 1442360_at 1443062_at 1443070_at 1443770_x_at 1444069_at 1445307_at 1445469_at 1445538_at 1446849_at 1452379_at 1457139_at 1458592_at 1459338_at	15520	-0.193	-0.4012	No
122	STAG3	1460229_at	15596	-0.204	-0.4040	No
123	ZFYVE16	1447947_at	15677	-0.215	-0.4071	No
124	FJX1	1422733_at 1450728_at 1457160_at	15700	-0.219	-0.4075	No
125	CALM1	1417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at	15747	-0.226	-0.4089	No
126	FAIM3	1429889_at	15831	-0.239	-0.4121	No
127	KCNJ2	1450503_at	16045	-0.280	-0.4211	No
128	HIST1H1C	1416101_a_at 1436994_a_at 1438204_at	16056	-0.282	-0.4207	No
129	EFHC1	1453159_at	16061	-0.283	-0.4201	No
130	BANK1	1442646_at 1456328_at	16204	-0.310	-0.4257	No
131	USP34	1434392_at 1434393_at 1444437_at 1446112_at 1460126_at	16370	-0.343	-0.4324	No
132	BLK	1422775_at	16449	-0.359	-0.4349	No
133	CHD7	1437745_at 1441154_at 1446621_at 1448026_at	16869	-0.463	-0.4529	No
134	IL7R	1448575_at 1448576_at	16887	-0.466	-0.4523	No
135	CD24	1416034_at 1437502_x_at 1448182_a_at	16992	-0.494	-0.4557	No
136	DNAJB14	1430561_at	17071	-0.514	-0.4578	No
137	ING1	1416860_s_at 1433267_at 1448496_a_at 1454534_at	17142	-0.530	-0.4595	No
138	PKN2	1437295_at 1437296_at	17149	-0.532	-0.4582	No
139	NELF	1436959_x_at 1439398_x_at 1442706_at 1449474_a_at	17196	-0.547	-0.4588	No
140	FHIT	1425893_a_at	17200	-0.548	-0.4573	No
141	MSX1	1417127_at 1448601_s_at	17320	-0.585	-0.4611	No
142	APRIN	1435242_at 1436161_at 1441553_at	17326	-0.586	-0.4597	No
143	SH2D3C	1415886_at	17355	-0.593	-0.4593	No
144	TPD52	1419493_a_at 1419494_a_at 1436008_at 1458668_at	17401	-0.607	-0.4596	No
145	KIF13A	1439532_s_at 1440578_at 1442252_at 1446026_at 1447853_x_at 1451890_at 1455746_at	17427	-0.614	-0.4590	No
146	CENTD1	1436895_at 1446649_at 1452291_at 1456337_at 1458173_at	17442	-0.621	-0.4578	No
147	HIP1R	1425551_at 1425552_at 1425553_s_at 1444832_at	17542	-0.658	-0.4605	No
148	FOXO1A	1416981_at 1416982_at 1416983_s_at 1459170_at	17552	-0.660	-0.4590	No
149	TCF4	1416723_at 1416724_x_at 1416725_at 1424089_a_at 1434148_at 1434149_at 1439336_at 1440106_at 1446386_at 1458201_at	17742	-0.712	-0.4656	No
150	RIMS3	1435971_at 1459042_at	17750	-0.716	-0.4639	No
151	WFS1	1448411_at	17793	-0.733	-0.4637	No
152	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	17852	-0.755	-0.4642	No
153	TLE4	1425650_at 1430384_at 1450853_at	18056	-0.832	-0.4712	No
154	JMJD1C	1426900_at 1439998_at 1441592_at 1448049_at 1458521_at	18083	-0.838	-0.4699	No
155	JARID1D	1424903_at 1452562_at 1452563_a_at	18175	-0.871	-0.4716	No
156	ENTPD4	1431761_at 1438177_x_at 1447900_x_at 1449190_a_at	18325	-0.920	-0.4758	No
157	CYFIP2	1428347_at 1442167_at 1444351_at 1449273_at	18340	-0.927	-0.4738	No
158	CACNB3	1448656_at	18365	-0.933	-0.4722	No
159	DCP2	1430150_at 1455070_at	18373	-0.935	-0.4699	No
160	EZH2	1416544_at 1444263_at	18393	-0.943	-0.4680	No
161	SNX2	1460224_at	18461	-0.967	-0.4683	No
162	COL5A1	1416740_at 1416741_at 1434479_at	18535	-0.992	-0.4688	No
163	ARID5B	1420972_at 1420973_at 1434283_at 1442176_at 1445423_at 1456831_at 1456973_at 1457483_at 1458238_at	18637	-1.019	-0.4705	No
164	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	18751	-1.058	-0.4727	No
165	TGIF	1422286_a_at	18917	-1.127	-0.4770	No
166	MDM1	1445709_at 1451053_a_at	18994	-1.167	-0.4772	No
167	SNTB2	1420371_at 1420372_at 1436986_at 1449840_at	19030	-1.181	-0.4754	No
168	PIAS1	1422581_at 1446448_at 1455486_at 1455611_at	19130	-1.232	-0.4764	No
169	GADD45G	1453851_a_at	19149	-1.239	-0.4736	No
170	GPM6B	1423091_a_at 1425942_a_at 1453514_at	19201	-1.263	-0.4724	No
171	VIL2	1450850_at 1456725_x_at	19287	-1.312	-0.4725	No
172	CD79A	1418830_at	19294	-1.315	-0.4690	No
173	RASGRP1	1421176_at 1431749_a_at 1434295_at 1450143_at	19531	-1.468	-0.4756	No
174	TNFRSF7	1452389_at	19611	-1.506	-0.4749	No
175	P2RY14	1424733_at	19634	-1.526	-0.4715	No
176	PCBP2	1421743_a_at 1435881_at	19762	-1.619	-0.4727	No
177	IRF4	1421173_at 1421174_at	19973	-1.781	-0.4772	Yes
178	CXCR4	1448710_at	19996	-1.803	-0.4731	Yes
179	ELK3	1417662_at 1442986_at 1445886_at 1448797_at	20156	-1.938	-0.4748	Yes
180	VPREB1	1449869_at	20202	-1.969	-0.4712	Yes
181	BACH2	1421343_at 1437667_a_at 1439468_at 1440304_at 1441657_at 1442605_at 1443263_at 1446929_at 1458730_at 1459136_at	20300	-2.024	-0.4698	Yes
182	EFHA1	1454808_at	20305	-2.027	-0.4642	Yes
183	CRIM1	1426951_at 1442548_at 1452253_at 1458497_at 1459632_at	20335	-2.048	-0.4596	Yes
184	LEF1	1421299_a_at 1436398_at 1440760_at	20391	-2.091	-0.4561	Yes
185	LAPTM5	1426025_s_at 1436905_x_at 1447742_at 1459841_x_at	20452	-2.153	-0.4527	Yes
186	IRS2	1443969_at	20483	-2.185	-0.4477	Yes
187	DCK	1428838_a_at 1439012_a_at 1449176_a_at	20506	-2.207	-0.4424	Yes
188	ELF2	1418275_a_at 1418276_at 1428045_a_at 1444574_at	20529	-2.240	-0.4370	Yes
189	AP1B1	1416279_at	20613	-2.344	-0.4340	Yes
190	PRDM2	1429251_at 1444123_at 1453068_at	20764	-2.531	-0.4336	Yes
191	DYRK2	1428637_at 1436918_at 1456502_at 1457667_x_at	20840	-2.640	-0.4295	Yes
192	DNTT	1420166_at 1449757_x_at 1450545_a_at	20863	-2.683	-0.4228	Yes
193	CD79B	1417640_at	20874	-2.699	-0.4154	Yes
194	PIK3CD	1422991_at 1422992_s_at 1443798_at 1453281_at 1458321_at	20915	-2.748	-0.4094	Yes
195	TTC13	1437709_x_at 1438631_x_at 1451351_at	20916	-2.749	-0.4014	Yes
196	DDX3Y	1426438_at 1426439_at 1452077_at	20981	-2.872	-0.3961	Yes
197	STK38	1416252_at 1431303_at 1439938_at	21000	-2.905	-0.3886	Yes
198	PPM1B	1425330_a_at 1426382_at 1441479_at 1451669_at	21026	-2.954	-0.3812	Yes
199	BTG2	1416250_at 1448272_at	21027	-2.958	-0.3727	Yes
200	NEIL1	1452871_at	21155	-3.244	-0.3692	Yes
201	ABCG2	1422906_at	21171	-3.295	-0.3604	Yes
202	SMARCA4	1426804_at 1426805_at	21223	-3.430	-0.3528	Yes
203	DACT1	1417937_at	21253	-3.502	-0.3441	Yes
204	ZHX2	1455210_at	21272	-3.557	-0.3346	Yes
205	CDC2L5	1440833_at 1452897_at 1458313_at	21277	-3.568	-0.3245	Yes
206	RAD52	1416602_a_at 1426296_at	21279	-3.578	-0.3143	Yes
207	ZFP36L1	1422528_a_at 1450644_at	21283	-3.593	-0.3040	Yes
208	CDKN1B	1419497_at 1434045_at	21335	-3.754	-0.2956	Yes
209	RAG2	1418065_at	21399	-3.980	-0.2870	Yes
210	SSBP2	1429951_at 1438423_at 1449815_a_at 1451542_at	21486	-4.320	-0.2785	Yes
211	BTG1	1426083_a_at 1437455_a_at	21499	-4.365	-0.2665	Yes
212	CD69	1428735_at	21570	-4.845	-0.2557	Yes
213	TUBA1	1418884_x_at	21593	-5.061	-0.2422	Yes
214	EDEM1	1424065_at 1451218_at	21594	-5.067	-0.2276	Yes
215	CAPN3	1426043_a_at 1433681_x_at	21616	-5.239	-0.2134	Yes
216	SMAD1	1416081_at 1448208_at 1459843_s_at	21702	-5.922	-0.2003	Yes
217	WSB2	1421846_at 1421847_at 1438129_at	21747	-6.370	-0.1839	Yes
218	ISG20	1419569_a_at	21753	-6.425	-0.1656	Yes
219	SLC35D1	1433595_at 1445629_at	21761	-6.534	-0.1471	Yes
220	SEC22B	1415766_at 1449063_at	21816	-7.221	-0.1288	Yes
221	ID3	1416630_at	21832	-7.406	-0.1081	Yes
222	IGF2R	1424111_at 1424112_at 1440979_at 1445966_at 1457356_at	21846	-7.564	-0.0869	Yes
223	RAG1	1440574_at 1450680_at	21864	-7.714	-0.0655	Yes
224	VAMP1	1421862_a_at 1421863_at	21870	-7.739	-0.0434	Yes
225	CDKN2C	1416868_at 1439164_at	21886	-7.816	-0.0216	Yes
226	MGAT5	1425744_a_at 1428643_at 1428644_at 1443444_at	21925	-8.265	0.0005	Yes