Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos |
| Phenotype | phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos |
| Upregulated in class | ATM_plus |
| GeneSet | EMT_DN |
| Enrichment Score (ES) | -0.61592835 |
| Normalized Enrichment Score (NES) | -1.9828172 |
| Nominal p-value | 0.0 |
| FDR q-value | 0.009536196 |
| FWER p-Value | 0.088 |
| PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|---|
| 1 | TIAM1 | 1418057_at 1444373_at 1453887_a_at | 632 | 3.108 | 0.0017 | No | ||
| 2 | ATP1A1 | 1423653_at 1435919_at 1435920_x_at 1451071_a_at 1458868_at | 1117 | 2.302 | 0.0022 | No | ||
| 3 | VAMP8 | 1420624_a_at | 1626 | 1.937 | -0.0020 | No | ||
| 4 | FBP2 | 1449088_at | 1911 | 1.776 | 0.0025 | No | ||
| 5 | CTGF | 1416953_at | 2468 | 1.493 | -0.0082 | No | ||
| 6 | HMMR | 1425815_a_at 1427541_x_at 1429871_at 1450156_a_at 1450157_a_at | 3380 | 1.215 | -0.0379 | No | ||
| 7 | ARHGEF1 | 1421164_a_at 1440403_at | 3467 | 1.195 | -0.0301 | No | ||
| 8 | PRKCZ | 1418085_at 1449692_at 1454902_at | 3654 | 1.155 | -0.0272 | No | ||
| 9 | ITPR1 | 1417279_at 1443492_at 1457189_at 1460203_at | 3827 | 1.125 | -0.0240 | No | ||
| 10 | ID1 | 1425895_a_at | 3846 | 1.120 | -0.0138 | No | ||
| 11 | TGFB3 | 1417455_at | 3962 | 1.104 | -0.0082 | No | ||
| 12 | ITGB5 | 1417533_a_at 1417534_at 1456133_x_at 1456195_x_at | 3996 | 1.094 | 0.0010 | No | ||
| 13 | ID4 | 1423259_at 1423260_at 1438441_at 1450928_at | 4709 | 1.000 | -0.0217 | No | ||
| 14 | NRP1 | 1418084_at 1448943_at 1448944_at 1457198_at | 4920 | 0.976 | -0.0217 | No | ||
| 15 | MYH9 | 1417472_at 1420170_at 1420171_s_at 1420172_at 1440708_at | 5126 | 0.949 | -0.0217 | No | ||
| 16 | ATF3 | 1449363_at | 5230 | 0.933 | -0.0173 | No | ||
| 17 | NUMB | 1416891_at 1425368_a_at 1444337_at 1457175_at | 5966 | 0.836 | -0.0426 | No | ||
| 18 | TIMP3 | 1419088_at 1419089_at 1449334_at 1449335_at | 6547 | 0.762 | -0.0616 | No | ||
| 19 | TSC22D1 | 1425742_a_at 1433899_x_at 1447360_at 1454758_a_at 1454971_x_at 1456132_x_at | 6583 | 0.758 | -0.0558 | No | ||
| 20 | CDH1 | 1443509_at 1448261_at | 7371 | 0.666 | -0.0852 | No | ||
| 21 | INMT | 1418697_at | 8947 | 0.505 | -0.1522 | No | ||
| 22 | PLK2 | 1427005_at | 10313 | 0.373 | -0.2109 | No | ||
| 23 | GRB7 | 1448227_at | 11036 | 0.305 | -0.2409 | No | ||
| 24 | F3 | 1417408_at | 12679 | 0.148 | -0.3144 | No | ||
| 25 | ID2 | 1422537_a_at 1435176_a_at 1453596_at | 12717 | 0.145 | -0.3147 | No | ||
| 26 | FOSB | 1422134_at | 13344 | 0.077 | -0.3425 | No | ||
| 27 | SERPINB5 | 1421752_a_at 1424623_at 1438856_x_at 1441941_x_at | 13698 | 0.039 | -0.3583 | No | ||
| 28 | TGM2 | 1417500_a_at 1426004_a_at 1433428_x_at 1437277_x_at 1438942_x_at 1455900_x_at | 13940 | 0.014 | -0.3692 | No | ||
| 29 | CTNND1 | 1422450_at 1437448_s_at 1445830_at | 14453 | -0.047 | -0.3921 | No | ||
| 30 | PKP1 | 1449586_at | 17495 | -0.638 | -0.5247 | No | ||
| 31 | STAT5A | 1421469_a_at 1450259_a_at | 18369 | -0.934 | -0.5554 | No | ||
| 32 | NNT | 1416105_at 1432608_at 1456573_x_at | 19316 | -1.330 | -0.5856 | No | ||
| 33 | KLF10 | 1416029_at | 19419 | -1.390 | -0.5766 | No | ||
| 34 | TACSTD1 | 1416579_a_at 1447899_x_at | 20281 | -2.015 | -0.5961 | Yes | ||
| 35 | CHKA | 1442277_at 1445795_at 1450264_a_at 1453582_at | 20561 | -2.277 | -0.5865 | Yes | ||
| 36 | RARA | 1450180_a_at | 20670 | -2.414 | -0.5677 | Yes | ||
| 37 | SGK | 1416041_at | 20724 | -2.482 | -0.5457 | Yes | ||
| 38 | CTSH | 1418365_at 1443814_x_at | 20858 | -2.673 | -0.5255 | Yes | ||
| 39 | IRF6 | 1418301_at | 21224 | -3.433 | -0.5085 | Yes | ||
| 40 | FLNA | 1426677_at | 21267 | -3.547 | -0.4755 | Yes | ||
| 41 | SAT1 | 1420502_at | 21461 | -4.208 | -0.4430 | Yes | ||
| 42 | CA2 | 1448752_at | 21576 | -4.902 | -0.4000 | Yes | ||
| 43 | DUSP1 | 1448830_at | 21619 | -5.241 | -0.3504 | Yes | ||
| 44 | JUP | 1426873_s_at | 21633 | -5.336 | -0.2985 | Yes | ||
| 45 | BCL6 | 1421818_at 1450381_a_at | 21833 | -7.407 | -0.2348 | Yes | ||
| 46 | KLF2 | 1448890_at | 21868 | -7.734 | -0.1604 | Yes | ||
| 47 | EGR2 | 1427682_a_at 1427683_at | 21921 | -8.208 | -0.0821 | Yes | ||
| 48 | EGR1 | 1417065_at | 21931 | -8.413 | 0.0002 | Yes |
