Details for gene set CHIARETTI_T_ALL

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	CHIARETTI_T_ALL_DIFF
Enrichment Score (ES)	-0.50243187
Normalized Enrichment Score (NES)	-2.0148697
Nominal p-value	0.0
FDR q-value	0.006623772
FWER p-Value	0.05

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LGALS1	1419573_a_at 1455439_a_at	146	5.321	0.0062	No
2	SLAMF1	1425569_a_at 1425570_at 1425571_at	256	4.417	0.0119	No
3	CEBPB	1418901_at 1427844_a_at	270	4.311	0.0218	No
4	NCF4	1418465_at	303	4.108	0.0302	No
5	CRIP1	1416326_at	385	3.759	0.0356	No
6	EMP3	1417104_at	391	3.744	0.0445	No
7	PDLIM1	1416554_at	641	3.076	0.0405	No
8	MELK	1416558_at	663	3.019	0.0469	No
9	PBX3	1421193_a_at 1440154_at 1442270_at 1447640_s_at	670	2.997	0.0538	No
10	ITPR3	1417297_at	918	2.555	0.0487	No
11	NFIL3	1418932_at	1100	2.318	0.0460	No
12	TAF6L	1452600_at	1242	2.173	0.0447	No
13	CLIC4	1423392_at 1423393_at 1438606_a_at	1261	2.158	0.0491	No
14	MYC	1424942_a_at	1314	2.118	0.0519	No
15	MX1	1451905_a_at	1408	2.049	0.0526	No
16	ATP9A	1415932_x_at 1425838_at 1427604_a_at	1411	2.049	0.0575	No
17	LRMP	1448409_at	1477	2.010	0.0593	No
18	FRMD4B	1426331_a_at 1426594_at 1438169_a_at 1441548_at 1452123_s_at	1778	1.857	0.0500	No
19	GCH1	1420499_at 1429692_s_at	1820	1.832	0.0526	No
20	SPOCK2	1435026_at 1447443_at 1450451_at 1457430_at 1458360_at	1982	1.739	0.0494	No
21	SERPINE2	1416666_at	1993	1.733	0.0531	No
22	S100A10	1416762_at 1439348_at 1456642_x_at	1998	1.730	0.0572	No
23	HES1	1418102_at	2003	1.723	0.0611	No
24	H1F0	1423702_at 1450522_a_at	2146	1.649	0.0586	No
25	IDS	1421216_a_at 1427812_at 1427813_at 1434751_at 1450166_at 1455481_at	2174	1.630	0.0613	No
26	TUBB2A	1427838_at	2249	1.598	0.0618	No
27	PSPH	1415673_at	2263	1.587	0.0650	No
28	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	2336	1.549	0.0655	No
29	DYNLT1	1428116_a_at	2337	1.548	0.0692	No
30	CCL3	1419561_at	2591	1.439	0.0611	No
31	CLEC11A	1418796_at	2596	1.439	0.0644	No
32	CRADD	1427505_a_at 1443430_at	2733	1.392	0.0615	No
33	UBE2E3	1448670_at 1448671_at	2756	1.386	0.0639	No
34	AHNAK	1428057_a_at 1428058_at 1429866_at 1452217_at	2855	1.352	0.0626	No
35	PTPRE	1418539_a_at 1418540_a_at 1459638_at	2984	1.316	0.0599	No
36	MEF2A	1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at	3313	1.230	0.0478	No
37	IL12A	1425454_a_at	3348	1.222	0.0492	No
38	UGCG	1421268_at 1421269_at 1435133_at 1439863_at	3350	1.222	0.0521	No
39	MAL	1417275_at 1432558_a_at	3404	1.211	0.0526	No
40	GNB2L1	1440120_at 1455168_a_at	3597	1.166	0.0466	No
41	CD44	1423760_at 1434376_at 1443265_at 1452483_a_at	3784	1.134	0.0408	No
42	ID1	1425895_a_at	3846	1.120	0.0407	No
43	PF4	1448995_at	4010	1.091	0.0358	No
44	RGS2	1419247_at 1419248_at 1447830_s_at	4227	1.057	0.0284	No
45	SPON1	1424415_s_at 1441226_at 1451342_at	4273	1.050	0.0289	No
46	LMO4	1420981_a_at 1439651_at	4400	1.032	0.0256	No
47	IGFBP7	1423584_at 1437804_at	4469	1.024	0.0250	No
48	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	4530	1.018	0.0247	No
49	ALDH1A2	1422789_at	4534	1.018	0.0270	No
50	NID2	1423516_a_at	4645	1.005	0.0244	No
51	HOXA9	1421579_at 1455626_at	4676	1.002	0.0254	No
52	XIST	1427262_at 1427263_at 1436936_s_at	4701	1.000	0.0268	No
53	TRIB2	1426640_s_at 1426641_at 1459852_x_at	4714	0.999	0.0286	No
54	SC4MOL	1423078_a_at 1459627_at	4720	0.999	0.0308	No
55	AQP3	1422007_at 1422008_a_at 1447727_at 1450460_at	4734	0.997	0.0326	No
56	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	4832	0.986	0.0306	No
57	LMO2	1454086_a_at	4846	0.984	0.0324	No
58	TFPI	1438530_at 1451790_a_at 1451791_at 1452432_at	4853	0.982	0.0345	No
59	RUNX3	1421467_at 1440275_at	5034	0.961	0.0285	No
60	ATF3	1449363_at	5230	0.933	0.0218	No
61	CASP8	1424552_at	5368	0.912	0.0177	No
62	RB1CC1	1418968_at 1431605_at 1449292_at	5386	0.911	0.0191	No
63	MAF	1435828_at 1437473_at 1444073_at 1447849_s_at 1447945_at 1456060_at	5452	0.902	0.0183	No
64	CTBP2	1422887_a_at 1439823_at	5476	0.898	0.0194	No
65	RYBP	1421111_at	5493	0.896	0.0209	No
66	PPBP	1418480_at	5548	0.889	0.0205	No
67	NOTCH3	1421964_at 1421965_s_at 1443300_at	5612	0.882	0.0198	No
68	TOB1	1423176_at 1440844_at	5630	0.879	0.0211	No
69	TSPYL2	1434849_at	5802	0.855	0.0153	No
70	SAP30	1417719_at	5967	0.836	0.0098	No
71	CAT	1416429_a_at 1416430_at 1441413_at	6020	0.830	0.0094	No
72	ATP11B	1445651_at 1451388_a_at	6038	0.827	0.0106	No
73	BHLHB2	1418025_at	6240	0.800	0.0033	No
74	HNRPDL	1420093_s_at 1420094_at 1424251_a_at 1424252_at 1428224_at 1428225_s_at 1449039_a_at 1456698_s_at	6283	0.795	0.0033	No
75	SCG2	1450708_at	6330	0.789	0.0031	No
76	PALLD	1427228_at 1433768_at 1440635_at 1440693_at	6519	0.765	-0.0037	No
77	CXCL2	1449984_at	6533	0.764	-0.0024	No
78	USP1	1423674_at 1423675_at 1451080_at	7310	0.674	-0.0365	No
79	ACTA1	1427735_a_at	7332	0.671	-0.0359	No
80	HOXA5	1443803_x_at 1448926_at	7391	0.664	-0.0369	No
81	SFPQ	1423795_at 1423796_at 1436898_at 1438458_a_at 1438459_x_at 1439058_at	7505	0.651	-0.0406	No
82	HHEX	1423319_at	7542	0.648	-0.0407	No
83	GUCY1A3	1420533_at 1420534_at 1434141_at	7769	0.624	-0.0496	No
84	PCTK2	1435143_at 1446130_at 1446272_at	7943	0.606	-0.0561	No
85	MLC1	1448139_at	8324	0.568	-0.0722	No
86	CDC7	1426002_a_at 1426021_a_at	8493	0.550	-0.0786	No
87	RAPGEF2	1452833_at	8531	0.546	-0.0790	No
88	IGLL1	1420176_x_at 1420177_at	9050	0.495	-0.1016	No
89	CUL1	1448174_at 1459516_at	9111	0.488	-0.1032	No
90	AJAP1	1443093_at 1457427_at	9294	0.472	-0.1104	No
91	FHL1	1417872_at 1459003_at	9442	0.457	-0.1161	No
92	HOXA10	1431475_a_at 1446408_at	9499	0.451	-0.1176	No
93	MN1	1454867_at	9590	0.441	-0.1207	No
94	IFRD1	1416067_at 1442014_at	9831	0.419	-0.1307	No
95	ACSL1	1422526_at 1423883_at 1447355_at 1450643_s_at 1460316_at	9922	0.410	-0.1339	No
96	BUB1B	1416961_at 1447362_at 1447363_s_at	10020	0.399	-0.1374	No
97	PLK2	1427005_at	10313	0.373	-0.1499	No
98	SKAP2	1418895_at 1457097_at 1460623_at	10473	0.357	-0.1564	No
99	SNF1LK	1419766_at 1459601_at	10479	0.357	-0.1557	No
100	RORA	1420583_a_at 1424034_at 1424035_at 1436325_at 1436326_at 1441085_at 1443511_at 1443647_at 1446360_at 1455165_at 1457177_at 1458129_at	10565	0.349	-0.1588	No
101	S100A4	1424542_at	10838	0.322	-0.1705	No
102	TRH	1418756_at	10937	0.313	-0.1743	No
103	SELENBP1	1417580_s_at 1450699_at	10961	0.311	-0.1746	No
104	SLC4A1	1416464_at 1431743_a_at 1434502_x_at	11017	0.307	-0.1764	No
105	SRPK2	1417134_at 1417135_at 1417136_s_at 1431372_at 1435746_at 1440080_at 1442241_at 1442980_at 1447755_at 1448603_at	11407	0.269	-0.1936	No
106	ARMCX2	1415780_a_at 1437849_x_at 1456739_x_at	11613	0.248	-0.2025	No
107	JARID2	1422698_s_at 1446082_at 1450710_at 1456661_at	11931	0.215	-0.2166	No
108	FGFR1	1424050_s_at 1425911_a_at 1436551_at	12054	0.204	-0.2217	No
109	SPRY2	1421656_at 1436584_at	12139	0.197	-0.2251	No
110	GABPB2	1440289_at 1440868_at 1443942_at 1453682_at 1455110_at	12179	0.194	-0.2264	No
111	ALCAM	1426300_at 1426301_at 1437466_at 1437467_at 1443086_at 1446720_at 1447040_at	12382	0.175	-0.2353	No
112	FLT3	1419538_at	12427	0.170	-0.2369	No
113	CR2	1425289_a_at	12465	0.167	-0.2382	No
114	PCDH9	1439322_at 1442659_at 1444215_at 1444724_at 1445052_at 1445061_at 1457973_at	12927	0.124	-0.2591	No
115	ST18	1436793_at 1455123_at	12940	0.122	-0.2594	No
116	FOSB	1422134_at	13344	0.077	-0.2778	No
117	METTL7A	1421185_at 1434151_at 1454858_x_at	13416	0.069	-0.2809	No
118	ALOX5	1441962_at	13619	0.047	-0.2901	No
119	GARNL1	1421448_at 1428594_at 1431097_at 1441119_at 1446684_at 1447422_at 1457013_at 1457176_at 1457532_at 1458117_at 1458410_at 1458685_at	13689	0.040	-0.2931	No
120	STAM	1416861_at 1416862_at 1457828_at 1459427_at	13765	0.031	-0.2965	No
121	SPINK2	1454710_at	13830	0.024	-0.2994	No
122	DDIT4	1428306_at	14005	0.006	-0.3074	No
123	CCL5	1418126_at	14078	-0.001	-0.3107	No
124	WASF1	1418545_at 1440438_at	14215	-0.017	-0.3170	No
125	GOLGA8A	1455755_at	14760	-0.087	-0.3418	No
126	HPGD	1419905_s_at 1419906_at	14784	-0.089	-0.3426	No
127	RGS1	1417601_at	14869	-0.100	-0.3463	No
128	G0S2	1448700_at	14960	-0.111	-0.3501	No
129	ADH5	1416185_a_at 1443380_at	15062	-0.126	-0.3545	No
130	NPTX2	1420720_at 1449960_at	15108	-0.132	-0.3562	No
131	TAP1	1416016_at 1420274_at 1448177_at 1449803_x_at	15147	-0.136	-0.3577	No
132	CXADR	1427321_s_at 1449949_a_at 1451865_at 1452391_at 1453282_at	15160	-0.137	-0.3579	No
133	IRF5	1460231_at	15259	-0.153	-0.3620	No
134	KBTBD11	1446549_at	15751	-0.226	-0.3841	No
135	RNF144	1421242_at 1421243_at 1438404_at 1445338_at	15893	-0.253	-0.3900	No
136	PRDX2	1418506_a_at 1430979_a_at	15918	-0.256	-0.3905	No
137	DUSP3	1425608_at 1434472_at 1456769_at	16548	-0.380	-0.4185	No
138	PRKCA	1427562_a_at 1443069_at 1445028_at 1445395_at 1446598_at 1450945_at	16589	-0.390	-0.4194	No
139	FXYD2	1419378_a_at 1419379_x_at 1449883_at 1456601_x_at	16710	-0.424	-0.4239	No
140	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	16815	-0.447	-0.4276	No
141	IL7R	1448575_at 1448576_at	16887	-0.466	-0.4298	No
142	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	16925	-0.475	-0.4303	No
143	LAT	1460651_at	17045	-0.505	-0.4346	No
144	GAS2	1429147_at 1435834_at 1438564_at 1450112_a_at	17276	-0.573	-0.4438	No
145	ARF6	1418822_a_at 1418823_at 1418824_at	17290	-0.576	-0.4430	No
146	TSHR	1421999_at 1428001_at	17418	-0.612	-0.4473	No
147	PLAGL1	1426208_x_at 1438588_at 1450533_a_at	17451	-0.622	-0.4473	No
148	AHR	1422631_at 1450695_at	17924	-0.778	-0.4671	No
149	ITGA6	1422444_at 1422445_at	18008	-0.808	-0.4690	No
150	SLC2A3	1421924_at 1427770_a_at 1437052_s_at 1455898_x_at	18009	-0.809	-0.4670	No
151	TLE4	1425650_at 1430384_at 1450853_at	18056	-0.832	-0.4671	No
152	PMAIP1	1418203_at	18072	-0.835	-0.4658	No
153	LDLR	1421821_at 1431947_at 1450383_at 1459403_at	18104	-0.845	-0.4652	No
154	IFI44	1423555_a_at	18215	-0.886	-0.4681	No
155	FTO	1430829_s_at 1448223_at	18287	-0.908	-0.4692	No
156	ETV5	1420998_at 1428142_at 1450082_s_at	18320	-0.919	-0.4684	No
157	ST3GAL1	1418946_at	18419	-0.952	-0.4706	No
158	ARID5B	1420972_at 1420973_at 1434283_at 1442176_at 1445423_at 1456831_at 1456973_at 1457483_at 1458238_at	18637	-1.019	-0.4781	No
159	ARID5A	1451340_at	18817	-1.084	-0.4838	No
160	SELL	1419480_at 1419481_at	19001	-1.169	-0.4894	No
161	RCBTB2	1416389_a_at 1416390_at 1429742_at 1431017_at 1447634_x_at	19116	-1.225	-0.4916	No
162	ETS2	1416268_at 1437809_x_at 1447685_x_at	19198	-1.262	-0.4923	No
163	KLF10	1416029_at	19419	-1.390	-0.4991	Yes
164	NFKBIE	1431843_a_at 1458299_s_at	19420	-1.390	-0.4957	Yes
165	IL6ST	1421239_at 1437303_at 1452843_at 1460295_s_at	19454	-1.411	-0.4938	Yes
166	RASGRP1	1421176_at 1431749_a_at 1434295_at 1450143_at	19531	-1.468	-0.4937	Yes
167	TNFRSF7	1452389_at	19611	-1.506	-0.4937	Yes
168	ANXA1	1448213_at	19616	-1.511	-0.4902	Yes
169	LAPTM4B	1416148_at 1436915_x_at 1438365_x_at 1459215_at	19832	-1.669	-0.4961	Yes
170	PTTG1IP	1420131_s_at 1420132_s_at 1437342_x_at	19862	-1.689	-0.4933	Yes
171	MINPP1	1423265_at 1429750_at 1455787_x_at	19892	-1.713	-0.4905	Yes
172	IGJ	1424305_at	19991	-1.797	-0.4906	Yes
173	TSC22D3	1420772_a_at 1425281_a_at 1425557_x_at 1444365_at	20005	-1.810	-0.4868	Yes
174	DUSP6	1415834_at	20035	-1.829	-0.4837	Yes
175	SWAP70	1423543_at 1434225_at 1440809_at	20051	-1.851	-0.4799	Yes
176	PPP1R16B	1425414_at 1455080_at	20187	-1.959	-0.4814	Yes
177	NKTR	1423248_at 1423249_at 1437660_at 1440804_at 1458676_at	20188	-1.959	-0.4767	Yes
178	ARHGEF10	1446374_at 1452302_at 1452303_at	20290	-2.019	-0.4764	Yes
179	MTMR6	1425485_at 1425486_s_at 1451726_at 1456540_s_at	20311	-2.034	-0.4724	Yes
180	PTGER4	1421073_a_at 1424208_at 1436441_at	20389	-2.086	-0.4709	Yes
181	IL4R	1421034_a_at 1423996_a_at 1447858_x_at	20417	-2.115	-0.4670	Yes
182	IFI30	1422476_at	20435	-2.137	-0.4626	Yes
183	CD97	1418394_a_at	20547	-2.260	-0.4622	Yes
184	CD8A	1440164_x_at 1440811_x_at	20584	-2.315	-0.4583	Yes
185	RSBN1	1435174_at 1441789_at 1443859_at 1459981_s_at	20598	-2.326	-0.4532	Yes
186	CD200	1448788_at 1458082_at	20641	-2.382	-0.4494	Yes
187	TIPARP	1426721_s_at 1452160_at 1452161_at	20721	-2.478	-0.4470	Yes
188	RAP2B	1417914_at 1417915_at 1439548_at 1448885_at	20746	-2.503	-0.4420	Yes
189	PRDM2	1429251_at 1444123_at 1453068_at	20764	-2.531	-0.4367	Yes
190	EPHB6	1418051_at	20786	-2.557	-0.4314	Yes
191	CSDA	1435800_a_at 1451012_a_at	20792	-2.563	-0.4254	Yes
192	ZBTB16	1419874_x_at 1427638_at 1439163_at 1445562_at 1456986_at 1459557_at	20826	-2.618	-0.4206	Yes
193	MDFIC	1427040_at	20842	-2.645	-0.4149	Yes
194	CTSH	1418365_at 1443814_x_at	20858	-2.673	-0.4091	Yes
195	DNTT	1420166_at 1449757_x_at 1450545_a_at	20863	-2.683	-0.4027	Yes
196	DDX3Y	1426438_at 1426439_at 1452077_at	20981	-2.872	-0.4012	Yes
197	IRF7	1417244_a_at	21245	-3.481	-0.4048	Yes
198	ADFP	1448318_at	21302	-3.649	-0.3986	Yes
199	MPO	1415960_at	21304	-3.651	-0.3897	Yes
200	FOS	1423100_at	21307	-3.658	-0.3810	Yes
201	CDKN1B	1419497_at 1434045_at	21335	-3.754	-0.3731	Yes
202	FYB	1452117_a_at	21343	-3.791	-0.3642	Yes
203	PRG1	1417426_at	21371	-3.882	-0.3560	Yes
204	CD52	1460218_at	21394	-3.956	-0.3474	Yes
205	ALAS2	1451675_a_at	21415	-4.037	-0.3386	Yes
206	TTK	1442594_at 1449171_at	21424	-4.068	-0.3291	Yes
207	DUSP2	1450698_at	21446	-4.159	-0.3199	Yes
208	PIM2	1417216_at	21501	-4.380	-0.3118	Yes
209	ARNTL	1425099_a_at 1446544_at 1457740_at	21561	-4.763	-0.3030	Yes
210	CD69	1428735_at	21570	-4.845	-0.2916	Yes
211	RAB6IP1	1424015_at	21612	-5.201	-0.2808	Yes
212	DUSP1	1448830_at	21619	-5.241	-0.2684	Yes
213	CD2	1418770_at	21715	-6.027	-0.2581	Yes
214	STK17B	1423452_at 1430165_at 1450997_at	21734	-6.237	-0.2438	Yes
215	ISG20	1419569_a_at	21753	-6.425	-0.2291	Yes
216	SLC35D1	1433595_at 1445629_at	21761	-6.534	-0.2135	Yes
217	ANXA5	1425567_a_at	21763	-6.592	-0.1976	Yes
218	STAT1	1420915_at 1440481_at 1450033_a_at 1450034_at	21776	-6.782	-0.1817	Yes
219	QKI	1417073_a_at 1425597_a_at 1429318_a_at 1438892_at 1444698_at 1451179_a_at 1457502_at	21806	-7.115	-0.1657	Yes
220	ID3	1416630_at	21832	-7.406	-0.1489	Yes
221	BCL6	1421818_at 1450381_a_at	21833	-7.407	-0.1309	Yes
222	ITM2A	1423608_at 1451047_at	21840	-7.488	-0.1130	Yes
223	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21869	-7.737	-0.0956	Yes
224	CDKN2C	1416868_at 1439164_at	21886	-7.816	-0.0773	Yes
225	BIRC3	1421392_a_at 1425223_at	21905	-7.942	-0.0589	Yes
226	S100A9	1448756_at	21916	-8.114	-0.0396	Yes
227	MGAT5	1425744_a_at 1428643_at 1428644_at 1443444_at	21925	-8.265	-0.0200	Yes
228	S100A8	1419394_s_at	21930	-8.411	0.0003	Yes