DatasetSet_01_ATM_minus_versus_SCID.phenotype_ATM_minus_versus_SCID.cls
#ATM_minus_versus_SCID
Phenotypephenotype_ATM_minus_versus_SCID.cls#ATM_minus_versus_SCID
Upregulated in classSCID
GeneSetREACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS
Enrichment Score (ES)-0.58561826
Normalized Enrichment Score (NES)-1.5053855
Nominal p-value0.06451613
FDR q-value0.8391929
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)		GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CD281417597_at 1437025_at 1443703_at8122.2270.0751No
2PAK21434250_at 1454887_at21721.2830.0778No
3HCK1446553_at 1449455_at50330.634-0.0207No
4AP1G11423388_at 1434081_at 1460658_at 1460712_s_at54880.567-0.0129No
5B2M1427511_at 1449289_a_at 1452428_a_at61010.488-0.0162No
6LCK1425396_a_at 1439145_at 1439146_s_at 1457917_at80040.287-0.0885No
7FYN1417558_at 1441647_at 1448765_at88980.199-0.1192No
8AP2B11427077_a_at 1445142_at 1446566_at 1452292_at 1458971_at98930.110-0.1590No
9AP1B11416279_at14157-0.273-0.3397No
10ARF11420920_a_at 1426390_a_at15895-0.465-0.3955No
11PACS11420112_at 1435762_at 1440014_at 1449737_at 1459707_at20063-1.352-0.5175Yes
12AP2S11433612_at21509-2.472-0.4589Yes
13CD41419696_at 1427779_a_at21569-2.571-0.3321Yes
14AP2A21432006_at 1432007_s_at 1435869_s_at 1452490_a_at 1455482_at21904-6.9250.0015Yes
Table: GSEA details [plain text format]



Fig 2: REACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS: Random ES distribution   
Gene set null distribution of ES for REACTOME_THE_ROLE_OF_NEF_IN_HIV_1_REPLICATION_AND_DISEASE_PATHOGENESIS