Details for gene set V$E2F_Q4

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	V$E2F_Q4_01
Enrichment Score (ES)	0.37868538
Normalized Enrichment Score (NES)	1.5266593
Nominal p-value	0.001984127
FDR q-value	0.068886705
FWER p-Value	0.778

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDCA7	1428069_at 1445681_at	17	9.326	0.0264	Yes
2	BMP7	1418910_at 1432410_a_at	31	9.059	0.0522	Yes
3	HOXA9	1421579_at 1455626_at	36	8.992	0.0783	Yes
4	POLA2	1425794_at 1448369_at 1456713_at	39	8.968	0.1043	Yes
5	PRIM1	1418369_at 1444544_at 1449061_a_at	62	8.664	0.1286	Yes
6	MCM6	1416251_at 1438852_x_at 1447756_x_at	213	5.833	0.1387	Yes
7	MCM4	1416214_at 1436708_x_at	225	5.728	0.1549	Yes
8	MYC	1424942_a_at	302	5.162	0.1664	Yes
9	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	307	5.145	0.1813	Yes
10	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	358	4.955	0.1934	Yes
11	HMGA1	1416184_s_at	362	4.933	0.2077	Yes
12	UNG	1425753_a_at	393	4.771	0.2202	Yes
13	GMNN	1417506_at	412	4.710	0.2331	Yes
14	RANBP1	1422547_at	415	4.703	0.2467	Yes
15	CDC6	1417019_a_at	461	4.496	0.2578	Yes
16	IMPDH2	1415851_a_at 1415852_at	494	4.374	0.2690	Yes
17	PCSK4	1425824_a_at	642	3.928	0.2737	Yes
18	RAD51	1418281_at	836	3.487	0.2750	Yes
19	EZH2	1416544_at 1444263_at	932	3.290	0.2803	Yes
20	E2F3	1427462_at 1434564_at	989	3.187	0.2870	Yes
21	DPYSL2	1433770_at 1450502_at 1458188_at 1458632_at	1080	3.052	0.2918	Yes
22	LUC7L2	1423251_at 1427087_at 1436165_at 1436766_at 1436767_at 1437761_at 1458423_at	1116	3.007	0.2989	Yes
23	MELK	1416558_at	1168	2.943	0.3052	Yes
24	POLE2	1427094_at 1431440_at	1207	2.896	0.3119	Yes
25	WEE1	1416773_at 1416774_at	1261	2.836	0.3177	Yes
26	RCOR2	1417302_at	1290	2.804	0.3246	Yes
27	TIAM1	1418057_at 1444373_at 1453887_a_at	1292	2.802	0.3327	Yes
28	UXT	1418986_a_at	1318	2.775	0.3396	Yes
29	UFD1L	1418087_at 1432367_a_at	1406	2.687	0.3435	Yes
30	ATP5G2	1415980_at 1456128_at	1410	2.683	0.3512	Yes
31	KNTC1	1435575_at	1441	2.656	0.3575	Yes
32	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	1592	2.489	0.3579	Yes
33	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	1610	2.476	0.3643	Yes
34	PPRC1	1426381_at	1717	2.370	0.3664	Yes
35	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	1733	2.357	0.3726	Yes
36	PLK4	1419838_s_at 1426580_at 1452115_a_at	1879	2.234	0.3724	Yes
37	PCNA	1417947_at	1885	2.232	0.3787	Yes
38	RPS19	1449243_a_at 1460442_at	2085	2.085	0.3756	No
39	ABCF2	1423863_at	2189	2.012	0.3768	No
40	MCM2	1434079_s_at 1448777_at	2322	1.939	0.3763	No
41	E2F1	1417878_at 1431875_a_at 1447840_x_at	2542	1.816	0.3716	No
42	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	2565	1.803	0.3758	No
43	ORC1L	1422663_at 1443172_at	2636	1.774	0.3778	No
44	SUV39H1	1427382_a_at 1432227_at 1432236_a_at	3081	1.612	0.3621	No
45	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	3110	1.602	0.3655	No
46	AP4M1	1418846_at	3344	1.528	0.3592	No
47	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	3356	1.524	0.3632	No
48	ERF	1422114_at 1435561_at	3738	1.396	0.3497	No
49	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	3800	1.381	0.3510	No
50	ARHGAP11A	1438434_at	3804	1.379	0.3548	No
51	GPRC5B	1424613_at 1451411_at	3998	1.333	0.3499	No
52	SLBP	1430058_at 1460168_at	4430	1.242	0.3337	No
53	PAQR4	1423101_at	4516	1.229	0.3334	No
54	SFMBT1	1422893_at 1422894_at 1443853_x_at	4697	1.193	0.3286	No
55	USP2	1417168_a_at 1417169_at	4736	1.184	0.3303	No
56	STMN1	1415849_s_at	4840	1.165	0.3289	No
57	ZIM2	1432297_at	5072	1.120	0.3216	No
58	PTMA	1423455_at	5264	1.088	0.3160	No
59	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	5306	1.081	0.3173	No
60	GLRA3	1450239_at	5321	1.077	0.3198	No
61	HMGN2	1433507_a_at	5478	1.051	0.3157	No
62	PKMYT1	1418481_at 1438601_at	5843	1.004	0.3019	No
63	HNRPD	1425142_a_at 1446083_at	5909	0.998	0.3018	No
64	DCLRE1A	1417904_at 1432097_a_at 1442329_at	6065	0.978	0.2975	No
65	JPH1	1421520_at 1438428_at	6218	0.955	0.2933	No
66	EPHB1	1455188_at	6384	0.929	0.2884	No
67	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	6732	0.880	0.2751	No
68	UCHL1	1448260_at	7712	0.749	0.2323	No
69	ERG	1425370_a_at 1440244_at	8274	0.673	0.2085	No
70	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	8291	0.671	0.2097	No
71	BAI1	1455363_at	8542	0.641	0.2001	No
72	RNF121	1426503_a_at 1426504_a_at	8944	0.593	0.1834	No
73	ETV4	1423232_at 1443381_at	9032	0.583	0.1811	No
74	NDUFA11	1429708_at 1444154_at	9224	0.560	0.1739	No
75	DMRT1	1423582_at	9346	0.545	0.1700	No
76	ANP32E	1420592_a_at 1447680_at	9769	0.497	0.1520	No
77	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	9779	0.496	0.1531	No
78	PIK3R3	1445097_at 1447068_at 1456482_at	10072	0.461	0.1410	No
79	NEGR1	1439303_at 1446279_at 1456392_at 1459126_at	10147	0.454	0.1389	No
80	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	10291	0.440	0.1336	No
81	SALL1	1450489_at	10417	0.426	0.1291	No
82	ATAD2	1436174_at 1443146_at 1443229_at	11025	0.359	0.1023	No
83	PODN	1435180_at	11171	0.343	0.0966	No
84	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	11230	0.336	0.0949	No
85	HOXC10	1439798_at	11465	0.307	0.0851	No
86	SLC6A4	1417150_at	11509	0.303	0.0840	No
87	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	11510	0.303	0.0849	No
88	FBXO5	1429499_at	11714	0.283	0.0764	No
89	PHF15	1430081_at 1455345_at	11803	0.271	0.0731	No
90	KCNA6	1421568_at 1441049_at 1456954_at	11885	0.263	0.0702	No
91	FANCC	1442265_at 1447632_at 1450861_at	12263	0.226	0.0535	No
92	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	12338	0.217	0.0507	No
93	IPO11	1428096_at 1429717_at	12413	0.209	0.0479	No
94	NR3C2	1435991_at 1440306_at 1442533_at	12611	0.187	0.0394	No
95	PPP1R9B	1447247_at 1447486_at	12746	0.170	0.0338	No
96	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	12794	0.165	0.0321	No
97	MAT2A	1423667_at 1433576_at 1438386_x_at 1438630_x_at 1438976_x_at 1439386_x_at 1456702_x_at	13252	0.111	0.0114	No
98	SLC16A2	1418446_at	13322	0.103	0.0086	No
99	APRIN	1435242_at 1436161_at 1441553_at	13456	0.087	0.0027	No
100	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	13510	0.080	0.0005	No
101	YBX2	1420762_a_at	13658	0.059	-0.0061	No
102	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	13807	0.039	-0.0128	No
103	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	13992	0.016	-0.0212	No
104	PEG3	1417355_at 1417356_at 1433924_at 1447731_at 1447732_x_at	14466	-0.052	-0.0427	No
105	SLC38A1	1415903_at 1454764_s_at	14604	-0.076	-0.0488	No
106	TBX3	1437479_x_at 1439567_at 1444594_at 1445757_at 1448029_at	14670	-0.085	-0.0516	No
107	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	14716	-0.092	-0.0534	No
108	GPS2	1417796_at	14938	-0.127	-0.0631	No
109	TOPBP1	1452241_at 1458480_at	15141	-0.160	-0.0720	No
110	FANCG	1420960_at	15516	-0.224	-0.0885	No
111	DNAJC5G	1437814_at	15656	-0.250	-0.0941	No
112	FMO4	1425799_at 1444852_at	16265	-0.386	-0.1209	No
113	MXD3	1422970_at 1438847_at 1448878_at	16289	-0.394	-0.1209	No
114	ATE1	1420036_at 1420651_at 1420652_at 1435173_at 1446611_at 1449709_s_at	16353	-0.409	-0.1226	No
115	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	16465	-0.437	-0.1264	No
116	MAP3K13	1430137_at 1440749_at 1447699_at	16696	-0.498	-0.1355	No
117	DAXX	1419026_at	16736	-0.509	-0.1358	No
118	CASP8AP2	1449217_at	16798	-0.528	-0.1371	No
119	RFC1	1418342_at 1449050_at 1451920_a_at	16812	-0.533	-0.1361	No
120	TMEM15	1424366_at	16823	-0.536	-0.1350	No
121	DDX17	1437773_x_at 1439037_at 1452155_a_at	16963	-0.583	-0.1397	No
122	FBXL20	1442464_at 1445575_at 1452826_s_at 1456378_s_at	17047	-0.609	-0.1417	No
123	KLF5	1430255_at 1451021_a_at 1451739_at	17065	-0.615	-0.1407	No
124	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	17080	-0.619	-0.1396	No
125	NHLRC2	1429145_at 1433929_at 1444863_at 1453048_at 1457312_at	17162	-0.650	-0.1414	No
126	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	17191	-0.658	-0.1408	No
127	PPM1D	1434142_at 1449092_at 1459069_at	17196	-0.659	-0.1390	No
128	CDC25A	1417131_at 1417132_at 1445995_at	17222	-0.670	-0.1382	No
129	SYT11	1429314_at 1429315_at 1429729_at 1436176_at 1449264_at 1455176_a_at	17287	-0.690	-0.1391	No
130	BRMS1L	1452850_s_at 1460443_at	17345	-0.711	-0.1397	No
131	STAG2	1421849_at 1450396_at	17670	-0.846	-0.1521	No
132	ACBD6	1452601_a_at 1453199_at	17693	-0.854	-0.1506	No
133	ADAMTS2	1435990_at 1455720_at 1457058_at	17774	-0.892	-0.1517	No
134	DDB2	1425706_a_at 1436680_s_at	18146	-1.023	-0.1658	No
135	PRKDC	1451576_at	18211	-1.043	-0.1657	No
136	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	18474	-1.157	-0.1743	No
137	CDC45L	1416575_at 1457838_at	18583	-1.205	-0.1758	No
138	CASP2	1448165_at	19011	-1.437	-0.1912	No
139	IPO7	1442511_at 1454955_at 1458165_at	19024	-1.446	-0.1875	No
140	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	19049	-1.462	-0.1844	No
141	EIF5A	1437859_x_at 1451470_s_at	19093	-1.496	-0.1820	No
142	PPP1R8	1424554_at 1435821_s_at	19534	-1.815	-0.1969	No
143	DLST	1423710_at 1430161_at 1431011_at 1437775_at	19585	-1.857	-0.1938	No
144	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	19804	-2.024	-0.1979	No
145	ZCCHC8	1423755_at 1441639_at	19867	-2.062	-0.1947	No
146	MAZ	1427099_at	19890	-2.077	-0.1897	No
147	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20198	-2.362	-0.1969	No
148	RBBP4	1434892_x_at 1442443_at 1454791_a_at 1454875_a_at 1456260_at	20226	-2.396	-0.1912	No
149	DCK	1428838_a_at 1439012_a_at 1449176_a_at	20266	-2.433	-0.1859	No
150	PIK3R4	1460352_s_at	20285	-2.456	-0.1795	No
151	OSBPL7	1428893_at 1459966_at	20379	-2.574	-0.1763	No
152	CTCF	1418330_at 1449042_at	20704	-3.033	-0.1823	No
153	GATA3	1448886_at	20751	-3.097	-0.1754	No
154	NCOA6	1423374_at	20816	-3.226	-0.1690	No
155	RAB11B	1423448_at	20856	-3.296	-0.1611	No
156	NUTF2	1434367_s_at 1447440_at 1449017_at	20898	-3.385	-0.1531	No
157	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	20930	-3.443	-0.1445	No
158	E2F7	1437187_at	20960	-3.504	-0.1357	No
159	TNPO2	1425592_at 1425593_at 1437283_at	21123	-3.849	-0.1319	No
160	JMJD1A	1426810_at	21153	-3.908	-0.1218	No
161	H2AFZ	1441370_at	21198	-4.032	-0.1121	No
162	USP52	1426700_a_at	21235	-4.128	-0.1017	No
163	AP1S2	1437998_at 1447903_x_at 1452657_at 1456252_x_at 1460036_at	21350	-4.568	-0.0936	No
164	FBXO9	1417480_at 1432211_a_at	21353	-4.578	-0.0804	No
165	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	21501	-5.169	-0.0720	No
166	AXUD1	1434350_at	21612	-5.882	-0.0599	No
167	MCM3	1420029_at 1426653_at	21664	-6.234	-0.0441	No
168	HRBL	1425362_at 1437642_at 1441347_at	21675	-6.316	-0.0261	No
169	ARID4A	1436191_at 1438464_at 1456420_at	21683	-6.386	-0.0079	No
170	ID3	1416630_at	21719	-6.663	0.0100	No