Details for gene set V$E2F1_Q4

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	V$E2F1_Q4_01
Enrichment Score (ES)	0.3584016
Normalized Enrichment Score (NES)	1.4453028
Nominal p-value	0.004140787
FDR q-value	0.101746686
FWER p-Value	0.971

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDCA7	1428069_at 1445681_at	17	9.326	0.0271	Yes
2	BMP7	1418910_at 1432410_a_at	31	9.059	0.0535	Yes
3	HOXA9	1421579_at 1455626_at	36	8.992	0.0801	Yes
4	POLA2	1425794_at 1448369_at 1456713_at	39	8.968	0.1068	Yes
5	MCM6	1416251_at 1438852_x_at 1447756_x_at	213	5.833	0.1163	Yes
6	MCM4	1416214_at 1436708_x_at	225	5.728	0.1329	Yes
7	MYC	1424942_a_at	302	5.162	0.1448	Yes
8	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	307	5.145	0.1599	Yes
9	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	358	4.955	0.1724	Yes
10	HMGA1	1416184_s_at	362	4.933	0.1870	Yes
11	UNG	1425753_a_at	393	4.771	0.1999	Yes
12	GMNN	1417506_at	412	4.710	0.2131	Yes
13	RANBP1	1422547_at	415	4.703	0.2271	Yes
14	CDC6	1417019_a_at	461	4.496	0.2384	Yes
15	PRPS1	1416052_at	485	4.410	0.2505	Yes
16	USP1	1423674_at 1423675_at 1451080_at	489	4.399	0.2635	Yes
17	IMPDH2	1415851_a_at 1415852_at	494	4.374	0.2764	Yes
18	RAD51	1418281_at	836	3.487	0.2711	Yes
19	EZH2	1416544_at 1444263_at	932	3.290	0.2766	Yes
20	E2F3	1427462_at 1434564_at	989	3.187	0.2835	Yes
21	DPYSL2	1433770_at 1450502_at 1458188_at 1458632_at	1080	3.052	0.2885	Yes
22	MELK	1416558_at	1168	2.943	0.2933	Yes
23	POLE2	1427094_at 1431440_at	1207	2.896	0.3002	Yes
24	NUP155	1418727_at 1449200_at	1247	2.853	0.3069	Yes
25	WEE1	1416773_at 1416774_at	1261	2.836	0.3148	Yes
26	UXT	1418986_a_at	1318	2.775	0.3205	Yes
27	ITGA1	1439713_at 1446569_at 1455251_at	1399	2.695	0.3248	Yes
28	UFD1L	1418087_at 1432367_a_at	1406	2.687	0.3326	Yes
29	ATP5G2	1415980_at 1456128_at	1410	2.683	0.3405	Yes
30	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	1592	2.489	0.3396	Yes
31	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	1610	2.476	0.3462	Yes
32	PPRC1	1426381_at	1717	2.370	0.3484	Yes
33	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	1733	2.357	0.3547	Yes
34	PCNA	1417947_at	1885	2.232	0.3545	Yes
35	MCM8	1429557_at	2034	2.124	0.3540	Yes
36	RPS19	1449243_a_at 1460442_at	2085	2.085	0.3579	Yes
37	MCM2	1434079_s_at 1448777_at	2322	1.939	0.3529	Yes
38	ING3	1422805_a_at 1422806_x_at 1450760_a_at 1460082_at	2337	1.930	0.3580	Yes
39	E2F1	1417878_at 1431875_a_at 1447840_x_at	2542	1.816	0.3540	Yes
40	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	2565	1.803	0.3584	Yes
41	SUV39H1	1427382_a_at 1432227_at 1432236_a_at	3081	1.612	0.3396	No
42	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	3110	1.602	0.3431	No
43	AP4M1	1418846_at	3344	1.528	0.3369	No
44	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	3356	1.524	0.3410	No
45	PCSK1	1421396_at	3617	1.435	0.3333	No
46	ERF	1422114_at 1435561_at	3738	1.396	0.3320	No
47	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	3800	1.381	0.3333	No
48	ARHGAP11A	1438434_at	3804	1.379	0.3373	No
49	PAQR4	1423101_at	4516	1.229	0.3083	No
50	USP2	1417168_a_at 1417169_at	4736	1.184	0.3017	No
51	STMN1	1415849_s_at	4840	1.165	0.3005	No
52	PTMA	1423455_at	5264	1.088	0.2843	No
53	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	5306	1.081	0.2857	No
54	GLRA3	1450239_at	5321	1.077	0.2882	No
55	ELAVL2	1421881_a_at 1421882_a_at 1421883_at 1433052_at	5466	1.053	0.2848	No
56	HMGN2	1433507_a_at	5478	1.051	0.2874	No
57	PKMYT1	1418481_at 1438601_at	5843	1.004	0.2737	No
58	HNRPD	1425142_a_at 1446083_at	5909	0.998	0.2737	No
59	DCLRE1A	1417904_at 1432097_a_at 1442329_at	6065	0.978	0.2695	No
60	JPH1	1421520_at 1438428_at	6218	0.955	0.2653	No
61	INSM1	1421399_at 1455865_at	6227	0.954	0.2678	No
62	EPHB1	1455188_at	6384	0.929	0.2634	No
63	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	6732	0.880	0.2501	No
64	DHX40	1428267_at 1457839_at	6958	0.845	0.2423	No
65	RALY	1418573_a_at	7066	0.831	0.2399	No
66	UCHL1	1448260_at	7712	0.749	0.2125	No
67	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	8291	0.671	0.1879	No
68	NDUFA11	1429708_at 1444154_at	9224	0.560	0.1468	No
69	DMRT1	1423582_at	9346	0.545	0.1429	No
70	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	9779	0.496	0.1245	No
71	PIK3R3	1445097_at 1447068_at 1456482_at	10072	0.461	0.1125	No
72	NEGR1	1439303_at 1446279_at 1456392_at 1459126_at	10147	0.454	0.1104	No
73	STK35	1431107_at 1439802_at	10204	0.448	0.1092	No
74	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	10291	0.440	0.1066	No
75	SALL1	1450489_at	10417	0.426	0.1021	No
76	ATAD2	1436174_at 1443146_at 1443229_at	11025	0.359	0.0753	No
77	PODN	1435180_at	11171	0.343	0.0696	No
78	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	11230	0.336	0.0680	No
79	HOXC10	1439798_at	11465	0.307	0.0582	No
80	SLC6A4	1417150_at	11509	0.303	0.0571	No
81	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	11510	0.303	0.0580	No
82	CHGB	1415885_at	11581	0.296	0.0557	No
83	FBXO5	1429499_at	11714	0.283	0.0504	No
84	PHF15	1430081_at 1455345_at	11803	0.271	0.0472	No
85	KCNA6	1421568_at 1441049_at 1456954_at	11885	0.263	0.0443	No
86	FANCC	1442265_at 1447632_at 1450861_at	12263	0.226	0.0276	No
87	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	12338	0.217	0.0249	No
88	NR3C2	1435991_at 1440306_at 1442533_at	12611	0.187	0.0130	No
89	PPP1R9B	1447247_at 1447486_at	12746	0.170	0.0073	No
90	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	12794	0.165	0.0056	No
91	MAT2A	1423667_at 1433576_at 1438386_x_at 1438630_x_at 1438976_x_at 1439386_x_at 1456702_x_at	13252	0.111	-0.0150	No
92	SLC16A2	1418446_at	13322	0.103	-0.0179	No
93	YBX2	1420762_a_at	13658	0.059	-0.0331	No
94	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	13807	0.039	-0.0398	No
95	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	13992	0.016	-0.0482	No
96	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	14301	-0.029	-0.0622	No
97	SLC38A1	1415903_at 1454764_s_at	14604	-0.076	-0.0759	No
98	PELO	1434071_a_at	14669	-0.085	-0.0786	No
99	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	14716	-0.092	-0.0804	No
100	RHD	1417049_at	14804	-0.105	-0.0841	No
101	TOPBP1	1452241_at 1458480_at	15141	-0.160	-0.0990	No
102	FANCG	1420960_at	15516	-0.224	-0.1155	No
103	DNAJC5G	1437814_at	15656	-0.250	-0.1212	No
104	PIM1	1423006_at 1435458_at	15787	-0.279	-0.1263	No
105	NUMA1	1423974_at 1423975_s_at 1441090_at 1444576_at 1444577_x_at	16121	-0.352	-0.1406	No
106	FMO4	1425799_at 1444852_at	16265	-0.386	-0.1460	No
107	MXD3	1422970_at 1438847_at 1448878_at	16289	-0.394	-0.1459	No
108	ATE1	1420036_at 1420651_at 1420652_at 1435173_at 1446611_at 1449709_s_at	16353	-0.409	-0.1475	No
109	DAXX	1419026_at	16736	-0.509	-0.1636	No
110	CASP8AP2	1449217_at	16798	-0.528	-0.1648	No
111	RFC1	1418342_at 1449050_at 1451920_a_at	16812	-0.533	-0.1638	No
112	TMEM15	1424366_at	16823	-0.536	-0.1627	No
113	DDX17	1437773_x_at 1439037_at 1452155_a_at	16963	-0.583	-0.1673	No
114	FBXL20	1442464_at 1445575_at 1452826_s_at 1456378_s_at	17047	-0.609	-0.1693	No
115	KLF5	1430255_at 1451021_a_at 1451739_at	17065	-0.615	-0.1682	No
116	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	17080	-0.619	-0.1670	No
117	NHLRC2	1429145_at 1433929_at 1444863_at 1453048_at 1457312_at	17162	-0.650	-0.1688	No
118	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	17191	-0.658	-0.1681	No
119	CDC25A	1417131_at 1417132_at 1445995_at	17222	-0.670	-0.1675	No
120	BRMS1L	1452850_s_at 1460443_at	17345	-0.711	-0.1710	No
121	TLE4	1425650_at 1430384_at 1450853_at	17552	-0.800	-0.1781	No
122	STAG2	1421849_at 1450396_at	17670	-0.846	-0.1809	No
123	ACBD6	1452601_a_at 1453199_at	17693	-0.854	-0.1794	No
124	ADAMTS2	1435990_at 1455720_at 1457058_at	17774	-0.892	-0.1804	No
125	DDB2	1425706_a_at 1436680_s_at	18146	-1.023	-0.1944	No
126	PRKDC	1451576_at	18211	-1.043	-0.1942	No
127	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	18444	-1.142	-0.2014	No
128	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	18474	-1.157	-0.1993	No
129	CCNT2	1427088_at 1427089_at 1435445_at 1452297_at 1453399_at 1457439_at	18540	-1.190	-0.1988	No
130	CDC45L	1416575_at 1457838_at	18583	-1.205	-0.1971	No
131	CASP2	1448165_at	19011	-1.437	-0.2124	No
132	IPO7	1442511_at 1454955_at 1458165_at	19024	-1.446	-0.2087	No
133	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	19049	-1.462	-0.2054	No
134	PHF13	1455175_at	19317	-1.641	-0.2128	No
135	PPP1R8	1424554_at 1435821_s_at	19534	-1.815	-0.2173	No
136	TBX6	1449868_at	19608	-1.881	-0.2150	No
137	ATRX	1420945_at 1420946_at 1420947_at 1438750_at 1441014_at 1441771_at 1450051_at 1453734_at 1456832_at	19667	-1.929	-0.2119	No
138	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	19804	-2.024	-0.2121	No
139	ZCCHC8	1423755_at 1441639_at	19867	-2.062	-0.2088	No
140	MAZ	1427099_at	19890	-2.077	-0.2036	No
141	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20198	-2.362	-0.2107	No
142	DCK	1428838_a_at 1439012_a_at 1449176_a_at	20266	-2.433	-0.2065	No
143	PIK3R4	1460352_s_at	20285	-2.456	-0.2000	No
144	OSBPL7	1428893_at 1459966_at	20379	-2.574	-0.1966	No
145	NUP153	1441689_at 1441733_s_at 1452176_at	20656	-2.957	-0.2004	No
146	CTCF	1418330_at 1449042_at	20704	-3.033	-0.1935	No
147	GATA3	1448886_at	20751	-3.097	-0.1864	No
148	NCOA6	1423374_at	20816	-3.226	-0.1797	No
149	RAB11B	1423448_at	20856	-3.296	-0.1717	No
150	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	20930	-3.443	-0.1648	No
151	TNPO2	1425592_at 1425593_at 1437283_at	21123	-3.849	-0.1621	No
152	JMJD1A	1426810_at	21153	-3.908	-0.1518	No
153	H2AFZ	1441370_at	21198	-4.032	-0.1417	No
154	USP52	1426700_a_at	21235	-4.128	-0.1311	No
155	FBXO9	1417480_at 1432211_a_at	21353	-4.578	-0.1228	No
156	KBTBD7	1428192_at 1439865_at 1452700_s_at	21484	-5.084	-0.1136	No
157	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	21501	-5.169	-0.0989	No
158	AXUD1	1434350_at	21612	-5.882	-0.0864	No
159	MCM3	1420029_at 1426653_at	21664	-6.234	-0.0701	No
160	HRBL	1425362_at 1437642_at 1441347_at	21675	-6.316	-0.0517	No
161	ARID4A	1436191_at 1438464_at 1456420_at	21683	-6.386	-0.0330	No
162	ID3	1416630_at	21719	-6.663	-0.0147	No
163	EGR3	1421486_at 1436329_at	21913	-8.258	0.0011	No